Aful017789.1
Basic Information
- Insect
- Aphaenogaster fulva
- Gene Symbol
- -
- Assembly
- GCA_003063765.1
- Location
- NJRO01000564.1:121338-132175[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.4e-12 1.5e-09 37.8 0.0 1 39 424 463 424 467 0.90 2 4 8.6e-13 8.9e-10 38.5 0.1 2 39 479 516 478 519 0.94 3 4 1.3e-18 1.3e-15 57.2 0.0 1 45 533 578 533 578 0.97 4 4 2.3e-18 2.4e-15 56.4 0.1 1 42 585 627 585 628 0.97
Sequence Information
- Coding Sequence
- ATGGCCGTTCGCTCGCTTCCTCATTCGTCCCGACGGAGACGCTCGATTATCGCATGCCCCACGACCCGACCAGCGCCATCAAACTCCCGAGCCGCCGAGATCGAAGATCCGCGGACGTTTCGGGCGGCCGTGCACACGCCCGGCCGTAACGAGCCGGCGAACGAGCGAAGGCACGAGAGAGACAGGCTCGAAGGAGGGGACAAGTGTCTCCTCGACAGCAGTTTTCTGAGACGCGAAGCGAATTTCGTCGTGGACGAGGCGCGTCTCGACGCGGAttgtcgtcgtcgcgacgctcgCCGAAACTGGATCGCCGGCGCAGATTTTCAGGAGCGACGTTTGGTGGGTGGACGAACGGTGCTCGacgtcgacgccgacgccgcctccgccgccgccgacgtcgACGCCCGTTTTGGTGACTTAGAACGATTTCCGTTTCTTCCGCAGTCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCACCACCCGTGAGTCTAAGCTCGCCGCCGAGGGAGTCCGGCACCCCGAGGTTGAACTACACGAAGCTGAAGAAGCACCACCAACGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAGCGGGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAACCATCGAGACTGGCAAGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCcagcgtaataataataacaataacaacaacaacggTAACGGCACGAGTAACAACGGTGACATGTTTTGTCACACAGGGCTAGGGCACTACGTCCACCATCCGGAACCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACTCCACCCAGCGCTACCCTGGTCGGCACCACCATTACCCATCTGAGGGATCCGGATCATCACACAGAAATTCAGAATTGCGATAGCGTCAAGATCAAGTTTGAGACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAGAACGCCGCCGATAGTGACAACATGATGATGATAACGCCGGAGTTGCTGGGACTGATGCCATCGGGAAGCTCCGGCCAGTCGGACTCGGGTGAGAACAATTCGAGAGGGCACAGCGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAGGCGTTGAGAAATCACAACATGAGTCTAACAAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTATGGCAACGGGCGCATCGACTAGGCATCGACACACCGAAGAAGGATGGTCCCACGAAATCCTGGAGCGACGAGAGTTTGAACAACGCCTTAGAAGCATTGCGCACCGGCTCCATTTCGGCTAACAAGGCGTCCAAAGCATACGGAATACCTTCTAGTACGTTGTACAAGATCGCCAGGAGAGAAGGTATCAGATTGGCCGCGCCGTTCAATGCGAGTCCCACTACGTGGACGCCCGCCGATCTGGATCGTGCTCTGGAAGCAATAAGATCTGGTCAGACATCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGGACTCTGTATGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCATTACAATCTGCCGTATTCGTCACTGTACGGACGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACATCTCGCAGGACGGCACCAGTCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MAVRSLPHSSRRRRSIIACPTTRPAPSNSRAAEIEDPRTFRAAVHTPGRNEPANERRHERDRLEGGDKCLLDSSFLRREANFVVDEARLDADCRRRDARRNWIAGADFQERRLVGGRTVLDVDADAASAAADVDARFGDLERFPFLPQSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYVHHPEPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00128877; iTF_00125823;
- 90% Identity
- iTF_00128877;
- 80% Identity
- -