Basic Information

Insect: Aphaenogaster miamiana
Gene Symbol: -
Assembly: GCA_003063725.1
Location: NJRN01000727.1:1134-8336[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 17 8.3e-05 0.0095 16.8 0.2 2 23 671 692 670 692 0.97

2 17 0.68 77 4.5 2.8 1 19 698 716 698 717 0.91

3 17 0.82 93 4.2 0.5 2 23 725 746 724 746 0.95

4 17 0.00011 0.013 16.4 1.3 3 23 755 776 754 776 0.98

5 17 0.0024 0.27 12.2 2.0 1 23 783 806 783 806 0.95

6 17 8.4e-05 0.0096 16.8 0.7 1 23 812 835 812 835 0.94

7 17 6 6.8e+02 1.5 1.8 3 23 844 863 843 863 0.83

8 17 1.2e-07 1.4e-05 25.7 2.1 2 23 869 890 868 890 0.97

9 17 2e-06 0.00023 21.9 0.2 1 23 896 918 896 918 0.99

10 17 0.0005 0.057 14.4 2.4 2 23 930 952 929 952 0.95

11 17 0.007 0.8 10.7 2.5 1 23 958 981 958 981 0.96

12 17 0.025 2.9 9.0 2.8 2 23 1002 1024 1001 1024 0.94

13 17 0.00022 0.025 15.5 0.5 2 23 1031 1053 1030 1053 0.96

14 17 5.1e-05 0.0058 17.5 1.0 3 23 1062 1082 1060 1082 0.96

15 17 0.0011 0.12 13.3 2.3 1 23 1088 1111 1088 1111 0.96

16 17 0.29 33 5.7 3.2 2 23 1118 1139 1117 1139 0.96

17 17 0.0085 0.97 10.5 2.6 1 23 1145 1167 1145 1167 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	17	8.3e-05	0.0095	16.8	0.2	2	23	671	692	670	692	0.97
2	17	0.68	77	4.5	2.8	1	19	698	716	698	717	0.91
3	17	0.82	93	4.2	0.5	2	23	725	746	724	746	0.95
4	17	0.00011	0.013	16.4	1.3	3	23	755	776	754	776	0.98
5	17	0.0024	0.27	12.2	2.0	1	23	783	806	783	806	0.95
6	17	8.4e-05	0.0096	16.8	0.7	1	23	812	835	812	835	0.94
7	17	6	6.8e+02	1.5	1.8	3	23	844	863	843	863	0.83
8	17	1.2e-07	1.4e-05	25.7	2.1	2	23	869	890	868	890	0.97
9	17	2e-06	0.00023	21.9	0.2	1	23	896	918	896	918	0.99
10	17	0.0005	0.057	14.4	2.4	2	23	930	952	929	952	0.95
11	17	0.007	0.8	10.7	2.5	1	23	958	981	958	981	0.96
12	17	0.025	2.9	9.0	2.8	2	23	1002	1024	1001	1024	0.94
13	17	0.00022	0.025	15.5	0.5	2	23	1031	1053	1030	1053	0.96
14	17	5.1e-05	0.0058	17.5	1.0	3	23	1062	1082	1060	1082	0.96
15	17	0.0011	0.12	13.3	2.3	1	23	1088	1111	1088	1111	0.96
16	17	0.29	33	5.7	3.2	2	23	1118	1139	1117	1139	0.96
17	17	0.0085	0.97	10.5	2.6	1	23	1145	1167	1145	1167	0.98

Sequence Information

Coding Sequence: atgCCAAACCCTGAAGTCAACAAGCGTGATCACAATTACAGTGAATCAAAACCTCAACATGCCAACAATGATAATGGTGCTATCAGTAAGGTATCTAAAACAGGGTCTATCATGGGTCAGATTAGAGACATCGATGAACTGAAGAAGATTGCGCCACGCGTCCGTCTACAGGACACCGAAAGCTTGAACGAGTTGACAAGGATCTCGTCTTTAAATAACAGCAAGTCACAGCAGAGCAATACATCCATTCTCGAGAAGACGCAACAAGAGTTGAGAAAATACTGCCGTACCTGCGCTGGCCTAAAATTGCCCTTGGTGGACATCTTTAGTGAGAAGGGCATCAAATTGCGATTGAGTCAGCAAATTAGGCATCTCGAAGTGAATCCTTATGATAGTCTTTCCACGCAGATGTGCATGGACTGTATCTGCGATCTTAGAAtcagttataaatttttcatgcaGATAAAAAAAGCTGAGATAAAACTCAAATCTATTCATGTCAATCTCACAACTGATAATGCTGCGAAGAAAGTAACACTGATTGACGAGTCTTCGACAACAAAAGAGGAGAAACAACCATCTTATTCAGATACAAAGCAGGAATGCCAATTATCCTCCACAATCCAACAAAACCTATCGTTAACGAAGCAAGAGAATCAAGTAACTCCCGGAAATTTAACAGACAACTCTGTTCCTAAAATCTGTGCCATCTTTTCGTTAAAAAACGAATTGCAGGTAAACTCTgaaaaagaggaggaagaggaagataacaacgaggaggaggaagaggtaGTACAAATGGGAGGAGGAATATTCGAGGAAGTGGCAGAGGGAGAGGATGAAGAATCCATCGAGGAATTTGATCCCGAAGATCCTGCGCTCTTGGAagatgaagaggaagaagaacaAGAACCTTCAAGACCCCCAGCAACCGTCTACAAGTACGATATGGCAGCAAAGTCTTACGTGAGGGTGGAAGGAAATGAGGAAGGAGTTTCCGTGAAATCTGAAATCTCGCAGACTTCAGAGGGCGAAGGAGAAAATCAAAGAGAGGGAATGAGGCAGCcgaatattttgaaaagaaaactgGTAATGCCAACGATAACGACGAAGAATGAAGGAGAGAACGAAGTACAGAGCGGAGTGGACGGATACAAGTTGCAAAAGTTAGATACGAATAATCTGTTGAATATGAATAGTCCTTCAGAAGAAGATGGAATTATGTATGTAACTGTAAAGGGATCCAAGCCGAACGAAATTCTTTTGGTGAAGGTCAAGAAAATGGACAAACCCATGGAATCCAAGCGTCCGGTAACCTCCGCTGAGCCTGTTGAGCGGTTTCTCAAACGTTACGAAACGCTGATATCGAAGGATTTCTCATCTCGACGTCCTGACGCCCGCGAGCAAATAATTGAGGAGCAAAtcgaagaatataaaaagaaacgtgAAAAAGTCCTTGGAGGTCAGTCAGTAATAACGTTCACCGTGAACGAAACACAGAAAGAAGTACAAGAAGAAGAGATTTCCGTCAAGTCAAATTTTGAAAAGGCGGAAGAAGAAATGACGcaagaaatttcgaaaaaagaggatgaagagagagaggaaggggaggaggaagagaagatgGAGAAGGGTGAAAGAATTGACGAAGGTCAAGAAAAGACCATTGATAATACAGAGGAATATCTTTCAAAGTTATCGAGATTGAAACTAAAGTGGGAAGAGACAAAGCGGAAAAAGGAAAGTTTACAAAAGGAACTGGACGAGTCGTATAGCGAAGGGAATTTGGAAAAATTGGCGAAAGTCTTGggggaaaaggaaaagaatctGCAgGAATTCCAGGAGTACCTGAAGCAGCGTAAAATCGTTCTTACTCGCCTCAAGGACCAGGATATAATCTCCCTCTATGAAGATCGATTCTCCACCACTTTAAAATCACCCCCTAAATCGCTCCCAGACCTTATCGACGTTCAACCTCCAATCGATCCTCTTACCGAAGAGCGCTATCTAGAATGCGATTACTGTTCCGAAACCTTCTCTAACCGCGATGTTCTTGAGGAACATCTCAAGTCCCACGACTATCGTATCCTTCATTGTTGCGACGACTGCGGGGAAGAATTTCAAACCAATAAAGCGAAAAGAAATCATAATGTGATTTGTGTGAggaaattaatttgcaaatattgcGACATAATTCTAGATTCCAGAGGGAAAAAACGTCAACATGAGCAGAAACATGTTGATGCTCTTTACGGTCAACTTTGCGAGGTGTGTGGGGAAAGATTTAAACACCAAGGAACCCTCGACCAGCATCTGAAGACGCAACATACGAGTTTGGAAAAGATTTATCAATGTCCAAAGTGTCCAAAAAAATTTGCTTTCAAGCAAAAGCTGAGCTTTCATTTAAAATCTGTTCATACAACTTTAAGAGCATATCTTTGCGAGGATTGCGGTGCGGATTTTAAGAATCCTGCGAGTTTGAGACATCATAGAATAAGAAAACATCAACCGGTTGGAAATAAGAGGGAATGTCAGGTTTGCAGGAAATTGGTGCCGTTTTACAGTTTATCGAAACACATGCACACGCATAAAGCTTACAGTATCCAGTGTCCACATTGCGACAAAATGTTCAAAAACAGCTCGACCTTGAAGCAACATGTGAGAATTCACGAAGATCAGAGGCAGTATCGTTGTGACACCTGCGGCGTTGGATTTAATCGGAGGGATGGTTTAAGATTGCATATGAGAGTGCACGAAAAAACTGGTAGTAGAGGCTTGAAAGAATGTTCCTGTCAAGTTTGTGGGGAAAAGTTCCCGAATCATTCAACTTTGGTGATTCATAGGAACAGAGTACACAAGGATGGGAGGCAGTATACGTGTCACATTTGTAACAGgtcgatgatttcgacgagATCGCTCGAGTGGCACATGTCGCACATTCATAATGAGACGATGCCAGgTATTATCCGCGACGAGTCTGGTCTGCCTGAAAAAAAACGAGTTTCCTGCTATCATTGCAATAAGACGTTCAAAACAGAACTGATTCTTCGCACACACATTAAAAATACGCATATGGAGAAGGATCCGTTGAAGTGTACCGACTGCGAGGCTGTTTTCACATCCGAAGTGCGTCTACGTCATCACATGATGGTCGTGCACAATCGTCTCGAGGGTACTTTGGCATGTCCTCACTGTCCGAAACGATTCGTGAACCAATTAAGGCTAAAGACCCACATGATCTCTCATTCTGAAGAAAGGCCATATACCTGTGAGATCTGCGGTTTCAATCTGAAGACAAAAATCCAGCTGATCAAGCATCATCAAAATCGACACAGCGATGAGAGACCTTTGCAGTGCAGGTATTGTCCTTGGCGATGCAAGCAAGTGAGTGCTCTCGTTTGCCACGAGCGCACCCATACCAATGAACGCCCATATTCGTGTAGCGTATGCCGGCAACGTTTCAAATATCTAGGCGATAAAAACAAGCACGAACGTCGTCACGAGAGCCTTGGTGGTTCAGGCTTCAAGCGTATCGTACCCGGAAGGAATGTCAAGCCGAAGATGCAGGCCGAAGATTCCTCCGGATCCGAGCAGGAACAGAGTTCGCTCAAGAACTCGGCGAATCAACAGAATGCTCAACAGATTACCGAAGAACAATACGAAGAGCAGCAGGAGGAACAGTATGATGAGAAATTTCCGGAAGAGCAGATAGTTAAGTTCGAACAGGGGCAGATCGTCAAGTTTGAAGATCAAGAGGAATACGAACAGGTGTACGAGCAGGAGTATGAAGAAACTTCGAGAGAAGCATCGGAAGCTACCGAGGTAATTATGAACATGGAAGATTCCAATGTATACACAGAGGAGGTTACGGCCGATAATATAGAGTCTGGGGCGGAGATTATGACAGACGAGATGATGACGAGTGACATTCTGCAATCTGGCACTGCTGTGATGCATCTGCAAAGCAAAGATGGCTTGGGGAAGATCCAAGTGATACCAGTGATGCTGTCGCTACCCGATCTGTCCGACGCAAACAACGAAGTTAATCTCGCGACCGCGTCAATCATGTATAATAATTAG
Protein Sequence: MPNPEVNKRDHNYSESKPQHANNDNGAISKVSKTGSIMGQIRDIDELKKIAPRVRLQDTESLNELTRISSLNNSKSQQSNTSILEKTQQELRKYCRTCAGLKLPLVDIFSEKGIKLRLSQQIRHLEVNPYDSLSTQMCMDCICDLRISYKFFMQIKKAEIKLKSIHVNLTTDNAAKKVTLIDESSTTKEEKQPSYSDTKQECQLSSTIQQNLSLTKQENQVTPGNLTDNSVPKICAIFSLKNELQVNSEKEEEEEDNNEEEEEVVQMGGGIFEEVAEGEDEESIEEFDPEDPALLEDEEEEEQEPSRPPATVYKYDMAAKSYVRVEGNEEGVSVKSEISQTSEGEGENQREGMRQPNILKRKLVMPTITTKNEGENEVQSGVDGYKLQKLDTNNLLNMNSPSEEDGIMYVTVKGSKPNEILLVKVKKMDKPMESKRPVTSAEPVERFLKRYETLISKDFSSRRPDAREQIIEEQIEEYKKKREKVLGGQSVITFTVNETQKEVQEEEISVKSNFEKAEEEMTQEISKKEDEEREEGEEEEKMEKGERIDEGQEKTIDNTEEYLSKLSRLKLKWEETKRKKESLQKELDESYSEGNLEKLAKVLGEKEKNLQEFQEYLKQRKIVLTRLKDQDIISLYEDRFSTTLKSPPKSLPDLIDVQPPIDPLTEERYLECDYCSETFSNRDVLEEHLKSHDYRILHCCDDCGEEFQTNKAKRNHNVICVRKLICKYCDIILDSRGKKRQHEQKHVDALYGQLCEVCGERFKHQGTLDQHLKTQHTSLEKIYQCPKCPKKFAFKQKLSFHLKSVHTTLRAYLCEDCGADFKNPASLRHHRIRKHQPVGNKRECQVCRKLVPFYSLSKHMHTHKAYSIQCPHCDKMFKNSSTLKQHVRIHEDQRQYRCDTCGVGFNRRDGLRLHMRVHEKTGSRGLKECSCQVCGEKFPNHSTLVIHRNRVHKDGRQYTCHICNRSMISTRSLEWHMSHIHNETMPGIIRDESGLPEKKRVSCYHCNKTFKTELILRTHIKNTHMEKDPLKCTDCEAVFTSEVRLRHHMMVVHNRLEGTLACPHCPKRFVNQLRLKTHMISHSEERPYTCEICGFNLKTKIQLIKHHQNRHSDERPLQCRYCPWRCKQVSALVCHERTHTNERPYSCSVCRQRFKYLGDKNKHERRHESLGGSGFKRIVPGRNVKPKMQAEDSSGSEQEQSSLKNSANQQNAQQITEEQYEEQQEEQYDEKFPEEQIVKFEQGQIVKFEDQEEYEQVYEQEYEETSREASEATEVIMNMEDSNVYTEEVTADNIESGAEIMTDEMMTSDILQSGTAVMHLQSKDGLGKIQVIPVMLSLPDLSDANNEVNLATASIMYNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01423842;
90% Identity: iTF_00126923;
80% Identity: -