Amia002524.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000471.1:26800-31525[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.093 11 7.2 3.1 1 23 396 418 396 418 0.97 2 19 0.016 1.8 9.6 0.5 2 23 455 476 454 476 0.96 3 19 0.00059 0.067 14.1 3.1 1 23 539 561 539 561 0.98 4 19 0.0087 0.99 10.5 1.6 1 23 564 586 564 586 0.98 5 19 3.9e-06 0.00044 21.0 0.7 2 23 634 656 634 656 0.97 6 19 0.0033 0.38 11.8 3.1 1 23 662 684 662 684 0.96 7 19 0.00063 0.071 14.0 0.7 1 20 690 709 690 714 0.94 8 19 8e-05 0.009 16.9 1.1 1 21 788 808 788 810 0.95 9 19 0.00021 0.024 15.6 4.8 1 23 865 887 865 887 0.97 10 19 0.00028 0.032 15.1 0.7 1 20 892 911 892 913 0.94 11 19 0.047 5.3 8.1 0.3 2 23 924 945 924 945 0.97 12 19 2.9e-05 0.0032 18.3 0.6 2 23 984 1005 983 1005 0.97 13 19 2.6e-05 0.003 18.4 1.6 1 23 1010 1032 1010 1032 0.95 14 19 0.0011 0.13 13.3 1.7 1 20 1038 1057 1038 1060 0.93 15 19 4.6e-06 0.00052 20.8 0.4 1 23 1076 1098 1076 1098 0.95 16 19 3.7e-07 4.3e-05 24.2 0.6 1 23 1104 1126 1104 1126 0.99 17 19 4.1e-05 0.0046 17.8 0.2 1 23 1132 1154 1132 1154 0.97 18 19 0.024 2.7 9.1 6.9 1 23 1160 1182 1160 1182 0.96 19 19 0.0051 0.58 11.2 0.6 1 20 1188 1207 1188 1209 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAGATAAATACGTCGGGTCCGCCGCAAGGCGAGGACGCGATCGCGGCCGCGGTGAAGATATGCCGCGTCTGCCTGCTCGACAACCTGATGATGCGCGACCTCTTCGTGGAGAGCGAGGTCGCGTCCCTGTCTGCGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGCGACGGTCTACCAGCACAGGTGTGCTGTGTGTGCGCCGACAAACTGGAGTCGGCGTACGAGTTTAAATTACAAGTGGAGCAAGCCGACAGTGTTCTTCGAGAGAGGCTCGTTGGAGGAATAATAAAGGAGGAGTTGTTTCTTAATGAGGTTGAAATACACTTGGACGCCGAGAGAAATGACGATATGGATGATATAAACGTCAGTACTGATTACGAATCTACCACCGAGGTGCTGCCAATGGAATCGGAAGCTGACAAGAACTTCCTGAAAGATGAGTTAATGATCTTGGAAGCTGAAAAATTGGCAGAAACAGAAGGAATGCAACAAGACCCGGAACAAGATAACTCGCAAGAAGTTAGTCAAGACATTGCGGAAGAGTTGCAGCAAGAATTAGCCAGCGCGGAAGACAATGATATGTCAGATGCTATCGAGGAATCTAGGGATGAAGAACCTTCTAGCGACGAGACTATTATTCGAAATTGCACAGAAGCAATTCCAACAGAGGAACATGATTATATTATGCAGCAACAGTGTATATTGCCTGCTGAGCAACTCTCATTGCAGGAAGAAATGCAGGAGAGTGTACCAGAACTTGAACAAGACACAGTAGAATACCAAGAGACACCATCTGAACAAAACCAAGAAATTCAGGCTGATCAAAATCAAGAGATTCAAGCTCAGCAAATTTATGAGATTCAGGCTGAGCAAAACCAAGAGACTAAATTTCAGACTGAACTAAAGCAAGAAGATGAAGCTGAACAAGTTCAGGAGAATCAAGCTGAGCAAAATCAAAATGACAAGGAGGAAACGCCCAAAGCTGATACTAGTGAGCCAATAGTGGAACAAGAATCATCCCAGAATGAAACTAGAAGAAGTAAACGTAGATTAACTCGCCGGATATTCACCGAGCGGGATTCCGATGAGGAAAATTACTTCGAAAATCTGAATCTTAGTTCTCGATTGAAGAAAGCGCAGGCGGATAAGACGGAGAAGATCTTTTTCATGTGTTACTTGTGCGACAAGCAATTCCTTTCAAAGAACGTCCTGAAAGAACATATGCATTCCCACGAAGAAGTGAGGAAGACGCTGTCCCTGAAGAAAACGCCGGAGAAACCGCAGAAGGTACAGACCAGTGTTTCCGTTGTGAAGACGCCGCCATCCGGAAAGAAAGCCAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCGTTTACTAAACATATTAAGCAACACGAGCGAGAGGAAGCGAAGGAGGATCCGATGCCGCTCGAGATATCGTTCCATGAAGATGAGCATAGTCTAGACTTCGATAACGGCAACAAATTAGAAGGCAGAAAACGAAGAAGAGGAAGTACAGCCGATGACATCGCGAGCGATAGTGATCAGGATAAAAGAAGAAAGTATAATTCTGTTGAGGAGTTTACATGTGATAAATGTCCAGAAAAATTCGATACAAAGCGAGGCTTGCATAAGCACTCTCTCACACACGTTAGCTTCAAATGCAGCGTGTGCAACGACGAATACAACACTCTGGAACAATTGAGAAATCATCGAACGAAGCATGTGGTCGAGGGCGTGCTTATCGAGCAAGACTTGGAAGAGGACATAAAACAGATGACCAAGAGCGAAAATAACGATGAAGACAACAAAAATATTGAGGATGAGGAGAACAACGACGAATCCGCCGAAAACATGAAAGAACCCAAGTGTCCGACGTGTTCAATGACATTCTCACGCAAGAAAGCACTGGCCAGACACATGGAGACAGCACACTCCAGCGCCCGCTCTTACGAATGCAAGATATGCTGTCAACAATTCACACGGAAGGATCTCCTGCGCAGGCATGCCGAGCAGCACGCACGAGTGAAGACCTACAAATGTACCCAATGCAACAAGACCTTCGGCAACGAGCTCACTCTGAGAAATCATCTGGTCGCTACAAATCACAAAACATTCATACATGGGCAGGAATACGATCCTAACAAGCGTATAAAGCGCGTGGCCGCGAGAGCGGCGCAGAAGATCATTGATAAGATCAAGACCGAGGATGGTCTCGAGGATTACGACGACGATAATGATGACAATACCGATTACGACGCCAAGTTGGACGGACATTATCGCCGTAAACGCGATGCTACACCAAAGAAGTACAATTATAAGAAGGAATTTGAGTGTGCGACCTGTAACAAGAAGTACAGCTCGAAGCAAGCATTGACGAAGCATATGCAGCCGCATGTGAAAGAGGAGAAAGCAGAGAAAGCGGCGGAAAAGGCGGCAGAAAAGCAGAAGAAAGCTGCTTTGGAGAAGAAGGAGCCGCAAAAGACAAGCAACACgggcgatgacgacgacgataacgacTCCGATTTTGAGAGTGGCCTCGACTGGCCGATGGACAGTCATGAATGCAGCACGTGCAAGAAGCGATACAGCACGAAGAAATCGCTGCTGCGTCACCAGCTATTGCACGAAGAGCCGAACTTTGAATGCGACATCTGCAACGTTAAATTCTATCGCAAAGATAAGCTGAAGGCGCACTATGACAAATGCTCGGAGAAAAATCCTGACCAAGTGAGAAAGTGCAATATCTGCGGCGATAGTTTCGAGAACAATGAGATCCTGCGCGAGCACAGGGCCAAGCACGTCATCGAGGGTATCTTAACGGAGGAGGATTTAAGAGATATCGAGCCGAAGTCCGAGGAGAAGAAGCCGGGCGAGAAGATCGGTCGAAAGAGGAGGACCGATATTGTGGGGCTCGAGTGTACCGAATGCAACAAACAGTACACCTCCAGGAAGGGCCTGCTGCGGCACATCCAGGTGCATGAAGGCAAGAAGTACCTATGCGACATATGCCCGAAGAAGTTCTACCGACGGGAACACTTGAAGATCCACGTGGCCAAGCACAACATGATTAAACCATACAAGTGCACCCGCTGCACCAAGCGCTTTATCAAGGAAGAGCAGCTTAACAATCATCTGCCCAAGCACGATCGCACTTTTAAGAAGAGCAAGGAGACCGACAGCTCGAAGAGATTCCTCTGTGAGATCTGCAGTAAGAGCTTCACGCAATCGACGACGTTGATAGCGCATCTGCGCGCTCACAACGGTATCAAACCGTACGTGTGCGAGGTATGTTCCAGGCCGTTCACTACCAACGCCTACTTGAAGATGCATATGCGTACGCACACGCAGGAACGCCCGTACATCTGCCAATACTGTTCGCGAGCGTTCGCGCGTGCCGATACCTTGGCGAATCATCTGACATCGCATACTGGCGAAGCCAAGTATCACTGCAAGTGCTGTCCGAAGAACTTCCGGCGATTAAAGTCGCTAAAGGAACACATGTTTATCCACACCGGTCAGCGACCTTACGAGTGTCCAACTTGCGACAGGAAGTTCAACAACAACGGCAGCCGCTATGCACACAGCAAGCGATGCAAACAGAATCTTTTGCAGAATCAGAACCGGGCGCAACAGATGATCCAACAGACGCAGCAGCAGCATCAACAGCAGCACCAGCAGCAGCCGCAGCAAGTGCAGATACAGGTGCAGCAGTCGCAGCCGCATCCGGTCAGGCTGCATCAAACCACGATTGGCCAAGCGCAAATAGTCAAGGCGCAGAATATCAAGACGATCGCTATAGCGAGACAAGCTGAGCCTACCACGGTGGCCACGGCACAACAAGTCATGCAGCATCAGGAGATACTGATGCCTTTAATCCTGCCTCTTACCGTCACTCTCACCGACGTAGGCGAGGAGGTGATACTACCCGAGGGTACAAAGATATTCACCACCTCCTAA
- Protein Sequence
- MDAVEINTSGPPQGEDAIAAAVKICRVCLLDNLMMRDLFVESEVASLSAKAMSFANVKMLPGDGLPAQVCCVCADKLESAYEFKLQVEQADSVLRERLVGGIIKEELFLNEVEIHLDAERNDDMDDINVSTDYESTTEVLPMESEADKNFLKDELMILEAEKLAETEGMQQDPEQDNSQEVSQDIAEELQQELASAEDNDMSDAIEESRDEEPSSDETIIRNCTEAIPTEEHDYIMQQQCILPAEQLSLQEEMQESVPELEQDTVEYQETPSEQNQEIQADQNQEIQAQQIYEIQAEQNQETKFQTELKQEDEAEQVQENQAEQNQNDKEETPKADTSEPIVEQESSQNETRRSKRRLTRRIFTERDSDEENYFENLNLSSRLKKAQADKTEKIFFMCYLCDKQFLSKNVLKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVSVVKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREEAKEDPMPLEISFHEDEHSLDFDNGNKLEGRKRRRGSTADDIASDSDQDKRRKYNSVEEFTCDKCPEKFDTKRGLHKHSLTHVSFKCSVCNDEYNTLEQLRNHRTKHVVEGVLIEQDLEEDIKQMTKSENNDEDNKNIEDEENNDESAENMKEPKCPTCSMTFSRKKALARHMETAHSSARSYECKICCQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFGNELTLRNHLVATNHKTFIHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKLDGHYRRKRDATPKKYNYKKEFECATCNKKYSSKQALTKHMQPHVKEEKAEKAAEKAAEKQKKAALEKKEPQKTSNTGDDDDDNDSDFESGLDWPMDSHECSTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVIEGILTEEDLRDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKQYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMIKPYKCTRCTKRFIKEEQLNNHLPKHDRTFKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPYVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTQQQHQQQHQQQPQQVQIQVQQSQPHPVRLHQTTIGQAQIVKAQNIKTIAIARQAEPTTVATAQQVMQHQEILMPLILPLTVTLTDVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- iTF_00126903;
- 80% Identity
- -