Amia024367.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- -
- Assembly
- GCA_003063725.1
- Location
- NJRN01000182.1:212474-221645[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.4e-13 1.5e-09 37.8 0.3 10 70 277 335 272 339 0.86
Sequence Information
- Coding Sequence
- ATGGACGGCGCGAACGTGAATGGCGGGAACGCCGCGGTACCGCGCGAGGATCCTAACCTCGaaagcggcgacggcggtgctggtggtggtggtggtgcggCGGTTGTGCCGATGGCGGAGACGCCGGACTCGAGTGACAAGGCGCAATCGGCGGCTGGCGGTAACGCGGACGCGCAAGAGGTCAACGGCGAGCTGAGGGGCTCGCCCAGGAAATACGGCGCGCAGCTCCCTCGCAGGAGGATGAGAAAGTTCAAGGCCAACTCCACGGGCATGGAAAGCGACGCGGGGGAGGCGCCTGGGACGAGGGGGCGTAAACGCAAGATCTCGGAGTACGAAGACGCCAGTTCTGAGGACTCCGAGGAGTTCAACGGCTTCGATTCCCAAGGAGTCGAATTGCAGCCAGGCAGTAACGTCCTCAAGAAACTCATTGCTGAAGCAGAAATAGCGGAAGCACAATTTACAAAACGTATGAGATATTTAACGAGAACTTTTGattctaaagaaaaattagatgACCAAGATTTCGATGATATGAGAACCTACGTTTATGAAACGGATAGTTACGAGCATTTGGATATaacaaagattaaaaaagaaaaggagtcCGACAGATCGGAAACAGATTCTATTGATATACCAAATAGCATAGATTCCGAAGTGGAGCCAAACAAAATCGATACTTCCATTAGATCGGCAAATTCCTCATCGGCTGCAAGTAGTCCCTCTGCAACATCACAAAGATCAAAAGGCAGCCTTGTTTCTGGTGGTGCCAGTCCAGGAGGAAAGCATAAATCTCCCGTTGATATGTCAAATCCTTTATACAAAGAGCCGTTTAAATATGGATGGAAACGAGAATTAGTGTTTAGAGCTAGTCATgactcttcttttaaaaaaatggctgatatatattattacacaccAAAGGGAAAAAAGGTTAGAAGTTTTAGAGAAGTTGCAGAATCTCttaattcaAAGGAGTTGACCATTGACAATTTCACATTCTTTAAAGAACCTATTGGGCTTAATGATCCTGAAAAGGAAGTTATTCGAGATGCTAAAAGAGCACGAGGATCTATGGGATCGGTAGGAaagaagtataataaaaaagctgCACCAATAAAAAAGACAATACAGGAACCTGTAGCAAAAAAACCAGTACAAGAACCTGCAATGAGAAAATCTTTATATGAACCTAGCACATCAAGGAAGCAACCTGTACAAGAACCTCTTGTTCCTGCATCTGTACCTACAGAAACTTCCAAACTTATTCCTGCACCTGTGTCGATATCTACAAAAGCTGCTAAATCGGCAAAAGCATCAGCGTCTGCAgcatataaaacaaaaacaacTGCAAAGAAAACTCCTCAGATAACAGAAATAAAATCACCAGCCGAGGAAAGTGAGATGCTTCCACCTCAGCGGAGTACAGCAAATACGAGAAGAAGCCAACAACCAGCTGAGAAGATTATACCAGTCAAAACCAAAAGATTGCTAACGCCGAAAGTTCAAGAACCATGCAGCATAAGATGTTCGACAAGTATGGGATTAATACCAAGTTTACAATGTCGAGTTTGTCTCTGTTTATATCATCCTGAATGTGTCGATGGTATGGAATTTGCAGGCAATGATGAATATGTCTGCAAGAATTGTCAGCCGGATACTAAAGAATCTCATATGCCAAACAATCCGTCTTTAACACCACCTCCATTGATTCCAATTAGTATGTTAGGTGCACAAAGTACAAAACCAAAACATCAGACTAATTCATCTCCTCCGAAATTGCAAAGAATTCCAAAATCTGATGGTACAGAAGCGCAAACAAGAAATTCTTCCAAAACTACCAAAATACCATCTTCAGTATCAAATTCACCTTCAAGCATAGACAAAAAGGAAAGTACTTGGTTTCCTCAGACGGAGAATGAATTTTTGCAAAGTCACGATGGTACGATGCCAAAACCGGCTCAAAATATCGCTTTAATGGGCGGCAAAAGATACATCGTAGTAccaaaaaataatgcaatggcAGTTCAACCGGCCATAACAGTAAAACCAGACAAAATTGGCGATAAGCCGCCGATGCTTCAAGATGATTCACTCACCATTTCAAATACTGCCGATAATTCTGTGGCAAATTTATGTGCACCTTCATCTTTAAATACTGATTTacctgaaaaaataaatattacacctGATAAAGAAATCTCAAAAAATACGATTTATCAGACAGATCTTGTATCTTCTGATACCACTGAAATGACtgaaacatttatatatgataataaagatAAGGATAATAAAAATACTCCTAAAAGAGATAATCCTGttgaaaatatatcagaaaatgAATCTTTTACTGCCAATATAGCTGTCTCAGAAAGAAAACAAACAGATACCAGTTGTAAATCACCTGAAAGTAAATCTGTTTGTACCTCAATACATACGGCAAGTATTACAAATGCTCTTGAAGCAAGTATGGAAACTGAAACAATTAAAACAGATCATCAACAGTTGTTATCAAGTAAAGTGGgtacagtaataaaaattaaaaatagcaagaGGAAGCAAAATCAACAGGAATCAGAGCAACAGCAAAATTTCATGAACTCAGTTTGCGCCGGTTATCATGCCCTGCTGCGTATTTTCCAATACCTTAAGGTCCAAGAGTTACTGCGAGCCGCGCGAGTTTGTAAAATGTGGCGTGATCTCGCTGCACATCCATCTTTATGGAAGACCGTACGGATGAAAAACAGTCAGGTAACTGACTGGGATGGTTTGGCGGATACGTTACAGAGACGTGGGACGCAGCATCTAGATCTCAGGAAAATGCTAGTCGCTGGCGAATCCGACAATATCTGGAGGAAATTTTTAACTGTCATACCACGAGTGACCAGTCTTGTGAAGCTTGAACTGTGCAGATGTCCCGTTATAGTTGTAGAAGAAGTGATTAAGAGCTGTCCACAGTTGGAGGTATTCAGTGCAATGTCGATCAAGTGCGACTCTCTCACATTAGAGTCGATTGGGAACTTGAGTCGATGTCAGGAACTTAGACTCAAAGCAATAACTGGAATGTCATTACATCAAGATCTTACACCTTTGCAGGAATTAAAACACTTAACACAACTGAGTTTAACATCAGTTAAAGAActtggaaagaaaaaaattgatgttgTACAAGCATTGACAAACTTGGAAACGTTAGAATTGGGCGAATGCTCCGACTTCCCTGACAAGTTTGGAACTACcgttttaatcaatttaaataaattggaaCGTCTTAGACTCGAAAAAGGTCAAGGATCTTGTTGCACGTTTGATATCCTTGAAGGCGTATCGAAGTTGGAGAATTTGAGTCAGATGGAATTGGTTAATTTTGATGTGAAGAATGGTTTTGATAAATGTCTTGCTAattgcaagaatattaaaaGGTTATTAATCATACCGACTTATATATCCCAATCGGCGACATCCAACAACATGGTGCTCGGAGGAGTCACAGAATTGTCAGACAATTTGACGCATTTCATATGGGGCGTTACGCTCGAGTTACTCAGGGTTACGGAACTGTTCGTTGATCAGTGCAACCTCATGAGTAAACAGGTTACTGGGGATTCTATACCAGTTTTAAAACCTGTTCCCTGCTTAAGATTAATTGCGGATGTTGAGGATGAGAACGAGAACCAAAAAGgcGACGATAAGCAACAGCCGCACCTGACAAGTCCGCAAGTCGACATTTTACCGTTGCCACAATTGCAAAAGCTTCTTTTAACCGCATTGCCCAAGACACGAGTCAAGATCTTGAAAATTCCTTTTCACGCCACATGGCGGCAGAGCATTTCCGATACCACCACGCAATAA
- Protein Sequence
- MDGANVNGGNAAVPREDPNLESGDGGAGGGGGAAVVPMAETPDSSDKAQSAAGGNADAQEVNGELRGSPRKYGAQLPRRRMRKFKANSTGMESDAGEAPGTRGRKRKISEYEDASSEDSEEFNGFDSQGVELQPGSNVLKKLIAEAEIAEAQFTKRMRYLTRTFDSKEKLDDQDFDDMRTYVYETDSYEHLDITKIKKEKESDRSETDSIDIPNSIDSEVEPNKIDTSIRSANSSSAASSPSATSQRSKGSLVSGGASPGGKHKSPVDMSNPLYKEPFKYGWKRELVFRASHDSSFKKMADIYYYTPKGKKVRSFREVAESLNSKELTIDNFTFFKEPIGLNDPEKEVIRDAKRARGSMGSVGKKYNKKAAPIKKTIQEPVAKKPVQEPAMRKSLYEPSTSRKQPVQEPLVPASVPTETSKLIPAPVSISTKAAKSAKASASAAYKTKTTAKKTPQITEIKSPAEESEMLPPQRSTANTRRSQQPAEKIIPVKTKRLLTPKVQEPCSIRCSTSMGLIPSLQCRVCLCLYHPECVDGMEFAGNDEYVCKNCQPDTKESHMPNNPSLTPPPLIPISMLGAQSTKPKHQTNSSPPKLQRIPKSDGTEAQTRNSSKTTKIPSSVSNSPSSIDKKESTWFPQTENEFLQSHDGTMPKPAQNIALMGGKRYIVVPKNNAMAVQPAITVKPDKIGDKPPMLQDDSLTISNTADNSVANLCAPSSLNTDLPEKINITPDKEISKNTIYQTDLVSSDTTEMTETFIYDNKDKDNKNTPKRDNPVENISENESFTANIAVSERKQTDTSCKSPESKSVCTSIHTASITNALEASMETETIKTDHQQLLSSKVGTVIKIKNSKRKQNQQESEQQQNFMNSVCAGYHALLRIFQYLKVQELLRAARVCKMWRDLAAHPSLWKTVRMKNSQVTDWDGLADTLQRRGTQHLDLRKMLVAGESDNIWRKFLTVIPRVTSLVKLELCRCPVIVVEEVIKSCPQLEVFSAMSIKCDSLTLESIGNLSRCQELRLKAITGMSLHQDLTPLQELKHLTQLSLTSVKELGKKKIDVVQALTNLETLELGECSDFPDKFGTTVLINLNKLERLRLEKGQGSCCTFDILEGVSKLENLSQMELVNFDVKNGFDKCLANCKNIKRLLIIPTYISQSATSNNMVLGGVTELSDNLTHFIWGVTLELLRVTELFVDQCNLMSKQVTGDSIPVLKPVPCLRLIADVEDENENQKGDDKQQPHLTSPQVDILPLPQLQKLLLTALPKTRVKILKIPFHATWRQSISDTTTQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523359;
- 90% Identity
- iTF_00128977;
- 80% Identity
- -