Amia001819.1
Basic Information
- Insect
- Aphaenogaster miamiana
- Gene Symbol
- Bgb
- Assembly
- GCA_003063725.1
- Location
- NJRN01000130.1:517564-519729[-]
Transcription Factor Domain
- TF Family
- CBF
- Domain
- CBF_beta domain
- PFAM
- PF02312
- TF Group
- Beta-Scaffold Factors
- Description
- Core binding factor (CBF) is a heterodimeric transcription factor essential for genetic regulation of hematopoiesis and osteogenesis. The beta subunit enhances DNA-binding ability of the alpha subunit in vitro, and has been show to have a structure related to the OB fold [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 5.3e-50 6.6e-46 156.5 0.0 1 108 34 138 34 142 0.94
Sequence Information
- Coding Sequence
- ATGATGCACGCAATGAGCGAGCATGCGGGGGTGGGGGTGCTGCCGTTCGACGGAATGGGTCTGTACGAACAGCCGCGGCCACCCCGGCTCGTCTTCAAGATGCCGCGTGTTGTGCCCGATCAGAAAGCCAAGTTCGAGAGCGACGAGCTGTTCAGAAGGTTGAGCCGCGAGAGCGAGGTGAGATACACTGGTTACAGAGACCGGCCGCTCGAAGAACGTCAAGTACGTTTCCAAAATGGCTGTCGGGAGGGCCATACGGAGATCGCATTCGCAGCGACGGGCACCAACCTCCAGCTCGTTTTCGGCAACGCGTCCGGGAACTATCCTGTCGATCCCAACGACTGCGATTTCGACAAGGAACACGGCAAAGTAAGTGGACGCCGCTCTTTTATCCACGCAATCATCTTGATTATCGTGGCCCTTATCCCGTCCATATCATCCCGATGA
- Protein Sequence
- MMHAMSEHAGVGVLPFDGMGLYEQPRPPRLVFKMPRVVPDQKAKFESDELFRRLSRESEVRYTGYRDRPLEERQVRFQNGCREGHTEIAFAATGTNLQLVFGNASGNYPVDPNDCDFDKEHGKVSGRRSFIHAIILIIVALIPSISSR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306022;
- 90% Identity
- iTF_00729057; iTF_00867909; iTF_01244985; iTF_01408819; iTF_01354386; iTF_00109592; iTF_01015576; iTF_00867159; iTF_00765304;
- 80% Identity
- -