Aash017706.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- -
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000719.1:59920-74101[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.7e-12 1.5e-09 37.8 0.0 1 39 429 468 429 472 0.90 2 4 1.1e-12 9.4e-10 38.5 0.1 2 39 484 521 483 524 0.94 3 4 1.5e-18 1.4e-15 57.2 0.0 1 45 538 583 538 583 0.97 4 4 2.8e-18 2.5e-15 56.4 0.1 1 42 590 632 590 633 0.97
Sequence Information
- Coding Sequence
- ATGGCCGTTCGCTCGCTTCCTCATTCGTCCCGACGGAGACGCTCGATTATCGCATGCCCCACGACCCGACCAGCGCCATCAAACTCCCGAGCCGCCGAGATCGAAGATCCGCGGACGTTTCGGGCGGCCGTGCACACGCCCGGCCGTAACGAGCCGGCGAACGAGCGAAGGCACGAGAGAGACAGGTCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCACCACCCGTGAGCCTAAGCTCGCCGCCGAGGGAGTCCGGCACCCCAAGGTTGAACTACACGAAGCTGAAGAAGCATCACCAACGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAACGGGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGTCGCTCTTGAAGACGGCCGACCAGCTGAAGATCAAGGGCCTGTGCGAGGTGCCGGAGAACAGGGACGGTCCACCACCCGTGAGCCTAAGCTCGCCGCCGAGGGAGTCCGGCACCCCAAGGTTGAACTACACGAAGCTGAAGAAGCATCACCAACGGTACAAGAGACCCAGAATCGAGCGGCCCACGTTCGAGCAACGGGCCACCGATCCGAGACACTACGATCGCTACAAAGAGGAAGAGGCCAACAACGATTACAGCCGCGATAACAAAGAGAATCATCGAGACTGGCAAGCTGAAGATGAAGAGTGCACGGagacagcaacagcagcagtaGCACTGGAAACTTGCcagcgtaataataataacaataacaacaacaaCGGTAACGGCACGAGTAACAACGGTGACATGTTTTGTCACACAGGGCTAGGGCACTACGTCCACCATCCGGAACCCGGAGAGGTCGATTTGCCCCCCGAGACCCAACCCACTCCACCCAGCGCTACCCTGGTCGGCACCACCATTACCCACCTGAGGGATCCGGATCATCACACAGAAATTCAGAATTGCGATAGCGTCAAGATCAAGTTTGAGACGCTGCACACGATGGACTCCTCGGACACGATCGACATAGACAGCCACATGTCGGATCGGGCGAGCGTGAGCTCGAAGAACGCCGCCGATAGTGACAACATGATGATGATAACGCCGGAGTTGCTGGGACTGATGCCATCGGGAAGCTCCGGCCAGTCGGACTCGGGTGAGAACAATTCGAGAGGGCACAGCGGACAGTCCAGCTCGCATCATCACGGTTCGAAGTCGTGGACGCAGGAGGACATGGACGCGGCTTTAGAGGCGTTGAGAAATCACAACATGAGTCTAACAAAAGCTTCGGCAACATTCGGTATTCCCTCGACGACTCTATGGCAACGGGCGCATCGACTGGGCATCGACACACCGAAGAAGGACGGTCCCACGAAATCCTGGAGCGACGAGAGTTTGAACAACGCCTTAGAAGCATTGCGCACCGGCTCCATTTCGGCTAACAAGGCGTCCAAAGCATACGGAATACCTTCTAGTACGTTGTACAAGATCGCCAGGAGAGAAGGTATCAGACTGGCCGCGCCGTTCAATGCGAGTCCCACTACGTGGACGCCCGCCGATCTGGATCGTGCTCTGGAAGCAATAAGATCTGGTCAGACATCCGTGCAGAGAGCGTCGACGGAATTCGGTATACCTACGGGGACTCTGTATGGAAGATGCAAGCGGGAAGGAATCGAGCTTAGCAGGAGCAATCCCACGCCGTGGAGCGAAGACGCTATGACTGAAGCTCTCGAGGCCGTCAGATTAGGGCACATGAGCATAAATCAAGCGGCGATCCATTACAATCTGCCGTATTCGTCATTGTACGGACGCTTCAAGAGAGGCAAATACGAGGAACCCGTCGTCGGCGACATCTCGCAGGACGGCACCAGTCCGCATTTCCATCAGAGCCCCAACCAGAATCACTCATCCGCCCTTCCAGATCAAATGCCTTATCCGGGCAGCTGA
- Protein Sequence
- MAVRSLPHSSRRRRSIIACPTTRPAPSNSRAAEIEDPRTFRAAVHTPGRNEPANERRHERDRSLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDPRHYDRYKEEEANNDYSRDNKESLLKTADQLKIKGLCEVPENRDGPPPVSLSSPPRESGTPRLNYTKLKKHHQRYKRPRIERPTFEQRATDPRHYDRYKEEEANNDYSRDNKENHRDWQAEDEECTETATAAVALETCQRNNNNNNNNNGNGTSNNGDMFCHTGLGHYVHHPEPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSGQSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHNMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNASPTTWTPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDISQDGTSPHFHQSPNQNHSSALPDQMPYPGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00127358;
- 90% Identity
- -
- 80% Identity
- -