Aash018495.1
Basic Information
- Insect
- Aphaenogaster ashmeadi
- Gene Symbol
- ZFX
- Assembly
- GCA_003063805.1
- Location
- NJRQ01000045.1:1466-6591[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 1.7 1.9e+02 3.3 0.1 3 23 15 35 14 35 0.94 2 15 3.2 3.6e+02 2.4 3.8 1 23 956 979 956 979 0.81 3 15 0.00013 0.015 16.2 1.9 3 23 1068 1089 1066 1089 0.96 4 15 0.0029 0.33 12.0 0.2 2 23 1102 1123 1102 1123 0.98 5 15 1.8e-05 0.002 18.9 2.3 2 23 1126 1147 1125 1147 0.97 6 15 0.0023 0.25 12.3 0.3 1 23 1153 1175 1153 1175 0.96 7 15 4.4e-05 0.005 17.7 4.3 2 23 1182 1203 1181 1204 0.95 8 15 0.11 13 7.0 3.7 5 23 1217 1235 1216 1235 0.97 9 15 2.3e-05 0.0025 18.6 1.5 3 23 1242 1263 1241 1263 0.97 10 15 0.01 1.2 10.2 0.3 2 23 1279 1299 1278 1299 0.97 11 15 6.8e-05 0.0077 17.1 0.7 1 20 1305 1324 1305 1327 0.92 12 15 8.5e-05 0.0096 16.8 2.7 1 23 1335 1357 1335 1357 0.99 13 15 0.0024 0.27 12.2 3.2 1 23 1363 1385 1363 1385 0.97 14 15 4.3e-06 0.00049 20.9 3.9 1 23 1391 1413 1391 1413 0.99 15 15 0.0015 0.17 12.9 6.3 1 23 1419 1441 1419 1442 0.96
Sequence Information
- Coding Sequence
- ATGGAGCTCAACGGTGCGGGAACGCCCGTCGGGGCCGTGGCCTGTCCTGTGTGCACCCTGTATTTGCGCGAGGGCATCAGTCTGCAGAAGCATCTGGACACTCATCCCAAGGAACAGGTTATAGATGCTCTCATCAAAGCCAGCGCCTCCTCGTTACAGtcgcagcaacaacagcagcagcagcaagcTTTACCAGCATCAGCAGCAACGTCACTACCGTTATCATTGCAGCCGCAAGCTGCGCTTCAGACCCCTACCTCCATCCAGGCGCCCCAAGCGTCCACCCAAGTCTCGCAAAACGCGCACATTTCTACTCATTCTCCATATCCCGTAGGACCCATCTTCGAATGTCCACCCATAAACACCATGATGCCGCCGCAGTTCACCTCATTCAGCTATCAGCAATTCGTGAACAATGGGACCATGATGATACCGCAGTACGCGATGGCGCCACAAGCCAATCAGATGATGCAGATGCTATACAATCCATACGGTATGTACCAACAGCAAATACCCACCGTCCAAATGATCTCACCAGTTGCAGCTATTCCTGGCGCGACGACGAGGGTGCGACCAGTGGTCACTATGGCTGGGGAGAGCAACGTCAGAACCCTGACGGTTCCTGTAAATAGTCCCGAGCCGAAGCAGATTCTGCCTGAGATTTTACCGGAGACGGAGCCCGAATCCGACCAAGTTATACCGGATGTGAGCCTCTCAGTCTCGCCTGTACTACAAAATGAGGATACATCCGTCAGAGCAAGGGAGGAGAGCGCCAGCAGTGCGCTGCCAATTGATCATCGAGGACAACAGACACAGAGCTCTGCATCTCCTGGTGATAGCACGGTGCAGCATGAGTATAATGCTATTCCTAGATCTATTACAATTGCTTGCGCTATAGATAATACCGATGATAAAGTGGAGAGTGTATTGCCAGACATGGTGGACGAGGAGCCATCAAGCAACATTTCGACGGACTTACAGTGTAAATCTGTAACGTATGAGCAACCAGAAACACAACAGTTTACACAACAAGTTATCGACGAAGGATACGTAAGTGTATCCAATAGGAAAACACCCAATGGGATAGCTGAAATTGACTCCATGATTTGCGAGCGTGAATCGGAAGTGATAAGTGATGAAAGGCCCACAAGTCGCAGCAGCAACGTTGCATCACCGCGGGATCTGATTGCAATAGACGCATTGAAAGACTCTGTCCAACCCGAGCTTAACTCGGtagaaaaattggaaaatttgatAACTATAATGGAGACGGAACTCAATAACGCTTCGCTTCAGAAAGAAAGTAATACACAAAACGATCAGGAGAGATTGGTGGACACGAAGGAGAAAACTACCGTAATAGATAGGGAGGAGAGCGTGATACACGATACAGTAGTCACGATCCCGGGCTCCCATGAAAAGGATCACATATTGCCCGACATACAGGAAGAGAACAAGTGGTGCCCGAGCAATTACGTAGCTAACGAACTAAGAACGCTAGAAAAAACTTGTAGTTTGTCATACAAAGTAGACTGCGCGAAAATAAATGAAGCACTGGAAAGATTGGAGAGACTGGAAAGAACTTTTCATTCGACTAATTATAAGTATAGTTTTTCAGCGCCCGCGTCCCCGGTCCCGAGAAGGAAGAACCGTAGGATCGTGCGTCGTTACAGCTCGCGATCGGAGCATGGATCGTGCGAAAATCTCAGCACGTATCGTCATCGCGTCGGTTTCGACGCGGCCATGCatgaggacgacgacgacgacgatgacgacgacgacgatgatgacgagGACGTGGACGAGGATGAGAAGATCGACGAGGAGGATAATTTCGATGAGGCGGACATGGAGATCGACGAGATCCCCAGTCCGCACACACCTTTCGCGGATTGCGGCGTCAGATCGCACACGCCGTTGTCCACGATCAGCGGCATTTCTGTATTAAGAGTTAGAAAGGATCTCAGCAAACCATGTTCACCCACGTCCATGCATTCGTTTCATCACGTGGACAGCGATAGCGTAACTCATGACGAGGACAGTAACGGCGTAGGTAACACCGCAGAGAAGGATCCAATCGACTGTTCTCaggtggaggaggagaaaATCAAGACTGATCATCAGCAGCAGGAGACGCAGGTGGCGGTGTGCGGAAGTGTCGCAAAGGTTCAGGAATCGAGCAGTAGCTACGCGTACCATCAATCAGTGATAACCGAACACATTAGTTCATTCCCCGTGATACACTCGCAGTCGTCCGTCTTGATGCACGAGTCGTATTCCATTACGACGAGCACCAAGACGCAGAACCTCTTGAATCTCTCCGAGTCAATAAATCCCACAACCAGCACCGAATCCAGAAGCTTTCACTCTGCCAAGTCGTTGATGCCGAAGCAATCGATGGAACTGCTCAACATAAATGAAGATGCTCACGCCGGGCCAATGAATGTCTTTGAATTCGACGGACTGCAAATATTAGTTCCTAGTACGTTTATAAGTGACTCGTCCCAGAAAGCGGTGAGTGCGACCAGCCAGCAATCTATGGCGAGTAGCGAGGGTGCAATAGGTATCGACGAGGAGGTGAAGAGTATTAATATGCGTGCCGATGAGACCATGCCGCCTAGGGGCGAATTGTCGGAACAAGAGAGTAATGGATGCACGGAGCAGTCTGCATGGCAGTTGTACATGGGTCAAGAATCTTCGCGCATGTCCACCTCTTACGATCTGTTGGCTCGAGAAAGCTGGGAAGAATCAGAAGGATCTGACAACGAGATCAGCGGACCGTTGTTGGATAGTAGATCGTTGGCCACGCACTTTACTTCGAGTCTGTTTCTGGATCGGGACCGAAAGACACCGACTAAACGAACATTCAAGTGTTCCCACTGTAGCGAAGTGTTTGATTGTCCAAAGGAGCGTAGAGTTCATAGCACAACGGTGCACAAGGATGCGATGCCCAGTAGCAGTAGAGATCAGTTGGATCAGCCAGAAGTAAAGGACATCAAGTTGCTGGACAGTCGCATGAATATGTTTGACGATATATTCATGCCGAGTATACACATGCAACAACACATGTACCATCATCAGCAGCCGCTCTTGCACCAGCTGCAGCCACCGTCGCAGCCTGGATCGGATGGTCTGACAAAGGCCGAGGCCGACCAGAAAATCGGCGAGAATCTAGTAATACCGTCGAACATCGAGGTGATCTGTACCATATGCAATCAGCGATTCAATAGCGAGAAATCCCTACAGGCGCATCACCGGCGCATGCATATCGCCGACGTGAACAAACGCATACGCGAGACCGCAAAGTGTCAGATATGCAATGAGGAATTTCCATCGGTATTCCTATTTAATGCTCATCTGAAGATACACCCGTTAGAGTGCGGACAGTGCGGCAAGTATTTCTACCGGAAGCAGAACTTCAAGCTCCACATGAAACGTCACCTGGGCATCAAGCCGTTCCCGTGTACCGTGTGCGACAAGGCATTCCTTACCAAGCAGAAACTGGAGGAGCACACCAACGGCCACACCGGCAACGCGCCCGTCAGGTGTAGTTTGTGCAATGAGACCTTCCGTAGATATTCGAATCTGACACAGCACAAAAACAGACATCATCTCAACATCAAGAAGAAGCTCAAGGATTACATATGCCACTGTGGCGAGGTGTTTCACACGAAGAAGAAACTCGCCTGGCACAAAGAGACTCACGACGAGAAGCCCAAGGCGTGCACGTACTGCAACGAGCGATTTATCCACATGGCCAGCCTGACGCGTCACATGCGTCGCGCCCACAATCGCCGCTTCGTTCCCGACGCTCAGCGCGAGAGCGAGAATGTCGAGTGCCCGATCTGCAAGTGTATCTACTTGCGATCGTCGCTAGCGGTGCATATGCGCGTGCACAACGGCGAGCGGCCGTACGAGTGTCAGGTCTGCTCCAAGGCGTTCAGCACCAAGTGGAACCTGCAGCTGCACAAGTGGACACACGCGGCGCGCAGTACCAAGCCCTTCAAATGTAATCAGTGCAGCGCGGCGTTCTACCGTCACAGCGATTACACGGCGCACATGAATTCCCATCGGAACGTGCGGCCGTACACGTGCAACTactgcggcgcgcagttcatCCGCAAGTACAATTGCCTGCGGCACGTGAAGGAGCACGAAGAGAACAAGGCATACACGTGCGACGTGTGCAATAAGACCTTCCACCGCTCGTACTATCTCAAGGAGCACCTGCGGGTGCACTCGGGCGCGCGGCCGTACACGTGTCACATCTGCGGGAAGTCCAGCGGCACCAAATCCAATCACAACAAGCACGTGCGAATCCATCACGCGCGCGAGCCTGTAAATACCGAGAATTGA
- Protein Sequence
- MELNGAGTPVGAVACPVCTLYLREGISLQKHLDTHPKEQVIDALIKASASSLQSQQQQQQQQALPASAATSLPLSLQPQAALQTPTSIQAPQASTQVSQNAHISTHSPYPVGPIFECPPINTMMPPQFTSFSYQQFVNNGTMMIPQYAMAPQANQMMQMLYNPYGMYQQQIPTVQMISPVAAIPGATTRVRPVVTMAGESNVRTLTVPVNSPEPKQILPEILPETEPESDQVIPDVSLSVSPVLQNEDTSVRAREESASSALPIDHRGQQTQSSASPGDSTVQHEYNAIPRSITIACAIDNTDDKVESVLPDMVDEEPSSNISTDLQCKSVTYEQPETQQFTQQVIDEGYVSVSNRKTPNGIAEIDSMICERESEVISDERPTSRSSNVASPRDLIAIDALKDSVQPELNSVEKLENLITIMETELNNASLQKESNTQNDQERLVDTKEKTTVIDREESVIHDTVVTIPGSHEKDHILPDIQEENKWCPSNYVANELRTLEKTCSLSYKVDCAKINEALERLERLERTFHSTNYKYSFSAPASPVPRRKNRRIVRRYSSRSEHGSCENLSTYRHRVGFDAAMHEDDDDDDDDDDDDDEDVDEDEKIDEEDNFDEADMEIDEIPSPHTPFADCGVRSHTPLSTISGISVLRVRKDLSKPCSPTSMHSFHHVDSDSVTHDEDSNGVGNTAEKDPIDCSQVEEEKIKTDHQQQETQVAVCGSVAKVQESSSSYAYHQSVITEHISSFPVIHSQSSVLMHESYSITTSTKTQNLLNLSESINPTTSTESRSFHSAKSLMPKQSMELLNINEDAHAGPMNVFEFDGLQILVPSTFISDSSQKAVSATSQQSMASSEGAIGIDEEVKSINMRADETMPPRGELSEQESNGCTEQSAWQLYMGQESSRMSTSYDLLARESWEESEGSDNEISGPLLDSRSLATHFTSSLFLDRDRKTPTKRTFKCSHCSEVFDCPKERRVHSTTVHKDAMPSSSRDQLDQPEVKDIKLLDSRMNMFDDIFMPSIHMQQHMYHHQQPLLHQLQPPSQPGSDGLTKAEADQKIGENLVIPSNIEVICTICNQRFNSEKSLQAHHRRMHIADVNKRIRETAKCQICNEEFPSVFLFNAHLKIHPLECGQCGKYFYRKQNFKLHMKRHLGIKPFPCTVCDKAFLTKQKLEEHTNGHTGNAPVRCSLCNETFRRYSNLTQHKNRHHLNIKKKLKDYICHCGEVFHTKKKLAWHKETHDEKPKACTYCNERFIHMASLTRHMRRAHNRRFVPDAQRESENVECPICKCIYLRSSLAVHMRVHNGERPYECQVCSKAFSTKWNLQLHKWTHAARSTKPFKCNQCSAAFYRHSDYTAHMNSHRNVRPYTCNYCGAQFIRKYNCLRHVKEHEENKAYTCDVCNKTFHRSYYLKEHLRVHSGARPYTCHICGKSSGTKSNHNKHVRIHHAREPVNTEN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01523563;
- 90% Identity
- iTF_00128452;
- 80% Identity
- -