Asyr007347.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- -
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000073.1:1809496-1813829[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 0.0003 0.025 15.5 0.1 3 23 125 145 123 145 0.96 2 28 0.023 1.9 9.5 4.2 1 23 149 172 149 172 0.96 3 28 1.1 95 4.2 0.7 3 21 178 196 177 197 0.93 4 28 0.0015 0.12 13.3 0.1 1 23 204 227 204 227 0.95 5 28 0.00038 0.032 15.1 0.4 1 23 234 257 234 257 0.98 6 28 0.016 1.3 10.0 1.2 1 20 262 281 262 283 0.94 7 28 0.84 70 4.6 0.6 3 23 333 354 332 354 0.92 8 28 0.18 15 6.7 0.3 2 23 379 401 378 401 0.93 9 28 0.0028 0.23 12.4 0.9 2 23 425 446 424 446 0.96 10 28 0.00098 0.082 13.8 1.4 1 21 450 470 450 471 0.96 11 28 0.065 5.4 8.1 0.5 1 23 512 535 512 535 0.97 12 28 0.1 8.3 7.5 0.7 2 23 561 583 560 583 0.95 13 28 0.0046 0.38 11.7 0.5 2 23 607 628 606 628 0.94 14 28 0.005 0.41 11.6 0.0 1 23 632 655 632 655 0.97 15 28 0.039 3.3 8.8 0.5 1 23 659 682 659 682 0.97 16 28 5.5 4.6e+02 2.0 0.3 1 23 687 712 687 712 0.87 17 28 1.4 1.2e+02 3.9 0.0 3 23 777 798 776 798 0.97 18 28 0.89 74 4.5 0.1 2 23 822 844 821 844 0.94 19 28 0.00019 0.015 16.1 1.1 2 23 868 889 867 889 0.96 20 28 0.027 2.2 9.3 0.4 1 21 893 913 893 914 0.93 21 28 1.1 92 4.2 0.8 1 23 955 978 955 978 0.95 22 28 2.1 1.8e+02 3.3 0.3 2 23 1004 1026 1003 1026 0.94 23 28 0.037 3.1 8.9 0.5 2 23 1050 1071 1049 1071 0.95 24 28 0.00019 0.016 16.1 0.0 1 23 1075 1098 1075 1098 0.97 25 28 0.3 25 6.0 0.2 1 23 1102 1125 1102 1125 0.96 26 28 3.2 2.7e+02 2.8 0.6 1 23 1130 1155 1130 1155 0.88 27 28 0.1 8.7 7.5 5.7 1 22 1164 1185 1164 1187 0.88 28 28 0.0075 0.62 11.1 2.3 1 23 1197 1220 1197 1220 0.97
Sequence Information
- Coding Sequence
- ATGGCGAAACGGAACGCAGAGGTTGTCTTACAAATGTCAACGGTCTATCCGTTCAGATTGCAAGGTACACGGATCATTTGCGTCTACTGCTGCGAAGAGTACGAAGAACCGACCCTCTTCAGAAGCCATGTTGATGAATCTCACACGCAAATGAACGTATTCACAGCTTTTGCTCACACGGGAAGACACAAAGATTACTTGAAAGTAGACTGTTTCAATCTTAGGTGCCGCATATGCATGGCTCCCTGCGTATCGATAGACGATGTAGCTCGGCATTTAATCGACACTCACCCCTGTAAGGAAACCAAGTGTTTAAACCTCAATTACGAAGTAGCCCTGCATCCGTACAATCTAATGAAAGACAAATGGATATGTGTTATTTGTGATAAGAAGTTTCCCAGTTTGACAAAACTAGGGAGGCACATGTCTGTACATTACTCGGAGTACACGTGCGATACCTGCGGCAGATGCTATTTGACCGTAGATAGTCTCAATCATCACATTAAATTTAGTCATTCCGGGAAGAATTTCTGTAGAAAGTGTTGGACTGAGTTTCCTACCAGAGATGAGAAGAAAAGTCACGTTAAAAATTCCGTAAAATGTAGACCCTTCGCATGCGTCTATTGCGGCGAGAGATTTACTTCGTGGGAACTTAAACAAGACCACTTGGTTACTGTACATCAGACGAAAAGACAAAAATACACCTGTCCGGAATGCGGCATAATCTATGATACTAGAAACCTATTCTATAGTCATTACAAAACAGCCCATACTGCAGATGCATTCGTGTGCACCTGTTGCGGGAGAAAGTTTAATGATAAGGCTGCGCTACATGATCACCAACTGGGGGCCGTATTGGAAATACGCAGACGTAGTGAAAGTGATCCAAAAAAGAAAATTGTTCTTGTGTGCCACACGCCACAGCGGCGCAATGCCGAACTTGTTCTTAGATACTCGACCGCGTACCCCTTCAAAACGCGTTTTAGTCAAATACTATGCGCTTTTTGCCACGACGAATATAATGCTTTGTCAGATTTAAGGTCTCACATGAAAATAGATCACATAAATTCAGACTTCAAAAACGTTTTCTATAGGACAAATGATAACTTAATCAAAGTTGACATAACTGAAATGAAATGTAAAATTTGCAAAAAAGACATCCCTGATATTGATACTCTTATGAATCATTTTTCAAGTGATCACCAGAAGCCTGTTAAATTCAATGCACGTTTTGGTGTATTGCCGTATAAGCAAAATGAAAAGAACCAGTGGATGTGCGTTTATTGTCAACGATGTTTCGCTGAGTTTGTTGCGTTTAAACGTCACATAGCTACACATTTTATGCAATTCTCATGCGATAAATGCGGCACAAGCTTCGTCTCTGATCACGCTCTCCGCGACCACCACCGACAGGTGAAGTGTTTTAGAACAACCTACCATCCTCGAAATGGAAAAATAATGAGATCTCGGAGTAATGCCGAAATTATTTTGCAATGTTCCACTGCATGCCCTTTTAGAACTTGGAAGAGCAACTTCAGTTGTGTGTTCTGCCGTCTGCAGTCAAACGATCCCACAACTTTGAGAATTCATATGGCCACGCGACACGCTAACTACGATGTACAAACTGCCTTTTATAAGAAATTAGGAAAAGACTTTCTCAGCATAGATATAACCGATTTGCAATGTAAATTATGTTTTATGCCTGTCACGACATTCGATACGTTAACCTACCACTTGAAAAATGATCATCAGAAACCTATTAATCTAGAAGCGCAACTTGGTGTCTTACCTTTTCGATTAAACGACGGTTCAAGCTGGAAGTGTACCATATGTCCCAACGAGTTTACAGACTTCATATCATTGAAGAAACACACGTCCGATCATTTTCAAAACTACGTGTGTGACGCATGTGGCGAAGGATTTATAACAGAGTCCGCAATGGTTGCACATACAAAAATACCGCACGAAAACAAATATAACTGCAGCCGATGTGTTGCCACTTTCTCTTCATTGGACGATAGAAATATTCACGTCAAAACTCAGCACACTTCGACTCCCTACATGTGCATGTATTGCTCAGACAAACCGAGGTTTGCGAATTGGGAATTGCGGAAGAGACATTTGATGGAAATACACAATTACAAGACCGGCGCCGATAAATACGAATGGCGCCGAAAGGAAAAAGGCGAATTAACTGAGAAAGAACGTAAACCAAAAAAGCGATTATTTCAAAGACAAGTTAACCAGAATCCCCAATGGAAAAACGCCGTTCTTGTACTTAAACACTCAACCGCATTCCCTTTTAAGACCTGTTTTAATAGGATACTGTGTTCGTATTGCCAGGATGAGTTTGAGCCCATGGCGGCGTTAAGGGAGCATGTGAAGACCGTACATTCCAATGCTGACTTTAACAGTGCATTTTATAAAGTGATCGAAGGGTTAAAAGTTGACATTACTGAGTTGAAATGTAAAATATGTTCAGTAGACATTCCGGACATTGATACGTTGATGACACATTTATCGAAGGACCACGAAATACCAGTTAATTTTGATGTACCTTTCGGGGTGCTACCTCATCGACAGAGCTCGACTGGGCTCTGGATGTGTCTCTATTGCGATAAAAGTTTCACTAAATTTTCACAGATTAACGAACACTTGCGTAATCATGTAAAAACTTTCGCTTGCGAAAAGTGTGGTGCCACTTTCTTGTCGTCACACGGATTGAGGCAGCACGAACGGAAGTTTCAGTGCTACAAGATGAACTACAAGCCCCGATTCGGTAAAACATTGAAACACCGTAGGAACACCGAAATTATCCTCCAGTGTTCGACAGCGTGTCCGTTCAGAACTTGGGGGCAGAATTTCAACTGCTGCCTGTGTAGAGTTCAATCTAACGATCCGATTGGTCTTCGTTCTCACATGGCTTCGAGACACGCCGAGTTCGATATAGATTTAGTATTCAGCAGAAAAATACGCAAGGAGTTTTTAAAAGTGGACATCACTGATCTGCAATGTAAACTCTGTTTTTTGCGTATAGACTCTATCGATACTCTACTCACACACTTGAAGAACGATCACAAGCAACCTATCAGTACAGACGTGCAGCCTGGAGTGATACCGTTCAAACTAAACGACGGTTCATCGTGGAAGTGTGCCATGTGTACTATACAATTCACCGATTTCCTGTCATTAAAGAAACATACCATAGAACATTTCCAAAATTACGTGTGCGATACTTGCGGTGAGGGTTTTATTACTGAAACTGCGTTGATCGCGCACACAAAGATACCGCACGATAATAAATTCGCTTGTGGACGGTGCGTCGCTACGTTCACCACCGTCGAAGAGAGAAGTATCCATATCAAAACGCAACACACGTCTCTCCCGTACATGTGTGTATACTGTAAAGAGAAACCCCGATTTGCCACTTGGGAACTGAGGAAGCGGCATCTCATGGAGTTCCACAATTACAAGCCGGGCGCCGATCAGTACGAATGCACGACGTGTCATATGACGTTTAAGACTAGATCTCAGAAATATCATCACAACGTTAAAGCGCATCGGACGAAGAAGGAGGCTGAATATAATTACCAATGCGGGAGTTGTTGCAGAGTGTTTGCATCTAAAATGTCTTTGGAAAAACATATGGCGAAGAAGCATTTTCATGTTTGA
- Protein Sequence
- MAKRNAEVVLQMSTVYPFRLQGTRIICVYCCEEYEEPTLFRSHVDESHTQMNVFTAFAHTGRHKDYLKVDCFNLRCRICMAPCVSIDDVARHLIDTHPCKETKCLNLNYEVALHPYNLMKDKWICVICDKKFPSLTKLGRHMSVHYSEYTCDTCGRCYLTVDSLNHHIKFSHSGKNFCRKCWTEFPTRDEKKSHVKNSVKCRPFACVYCGERFTSWELKQDHLVTVHQTKRQKYTCPECGIIYDTRNLFYSHYKTAHTADAFVCTCCGRKFNDKAALHDHQLGAVLEIRRRSESDPKKKIVLVCHTPQRRNAELVLRYSTAYPFKTRFSQILCAFCHDEYNALSDLRSHMKIDHINSDFKNVFYRTNDNLIKVDITEMKCKICKKDIPDIDTLMNHFSSDHQKPVKFNARFGVLPYKQNEKNQWMCVYCQRCFAEFVAFKRHIATHFMQFSCDKCGTSFVSDHALRDHHRQVKCFRTTYHPRNGKIMRSRSNAEIILQCSTACPFRTWKSNFSCVFCRLQSNDPTTLRIHMATRHANYDVQTAFYKKLGKDFLSIDITDLQCKLCFMPVTTFDTLTYHLKNDHQKPINLEAQLGVLPFRLNDGSSWKCTICPNEFTDFISLKKHTSDHFQNYVCDACGEGFITESAMVAHTKIPHENKYNCSRCVATFSSLDDRNIHVKTQHTSTPYMCMYCSDKPRFANWELRKRHLMEIHNYKTGADKYEWRRKEKGELTEKERKPKKRLFQRQVNQNPQWKNAVLVLKHSTAFPFKTCFNRILCSYCQDEFEPMAALREHVKTVHSNADFNSAFYKVIEGLKVDITELKCKICSVDIPDIDTLMTHLSKDHEIPVNFDVPFGVLPHRQSSTGLWMCLYCDKSFTKFSQINEHLRNHVKTFACEKCGATFLSSHGLRQHERKFQCYKMNYKPRFGKTLKHRRNTEIILQCSTACPFRTWGQNFNCCLCRVQSNDPIGLRSHMASRHAEFDIDLVFSRKIRKEFLKVDITDLQCKLCFLRIDSIDTLLTHLKNDHKQPISTDVQPGVIPFKLNDGSSWKCAMCTIQFTDFLSLKKHTIEHFQNYVCDTCGEGFITETALIAHTKIPHDNKFACGRCVATFTTVEERSIHIKTQHTSLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGADQYECTTCHMTFKTRSQKYHHNVKAHRTKKEAEYNYQCGSCCRVFASKMSLEKHMAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00055906; iTF_01209603;
- 90% Identity
- -
- 80% Identity
- -