Aaes022062.1
Basic Information
- Insect
- Alsophila aescularia
- Gene Symbol
- -
- Assembly
- GCA_946251895.1
- Location
- CAMIUG010001019.1:106959-111273[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 25 0.094 9.1 7.9 0.2 2 23 120 141 119 141 0.96 2 25 0.16 15 7.2 2.1 1 23 145 168 145 168 0.95 3 25 0.27 26 6.5 0.3 3 21 175 193 174 194 0.94 4 25 0.33 32 6.2 2.3 5 23 205 224 196 224 0.84 5 25 0.0045 0.43 12.1 2.2 1 23 231 254 231 254 0.96 6 25 6.3 6.1e+02 2.2 0.9 3 14 261 272 260 275 0.84 7 25 0.004 0.39 12.2 0.9 3 23 324 345 323 345 0.97 8 25 2.1 2.1e+02 3.6 0.3 2 23 370 392 369 392 0.93 9 25 0.0071 0.7 11.4 0.1 2 23 416 437 415 437 0.96 10 25 0.0012 0.12 13.8 1.4 1 21 441 461 441 462 0.96 11 25 0.08 7.8 8.1 0.5 1 23 503 526 503 526 0.97 12 25 0.37 36 6.0 0.2 2 23 552 574 551 574 0.95 13 25 0.011 1.1 10.8 0.5 2 23 598 619 597 619 0.94 14 25 0.0062 0.6 11.6 0.0 1 23 623 646 623 646 0.97 15 25 0.85 83 4.9 0.7 1 23 650 673 650 673 0.97 16 25 6.6 6.5e+02 2.1 0.3 1 23 678 703 678 703 0.87 17 25 0.72 71 5.1 0.2 2 23 813 835 812 835 0.95 18 25 0.00027 0.026 15.9 1.2 2 23 859 880 858 880 0.96 19 25 0.011 1 10.9 0.4 1 21 884 904 884 905 0.95 20 25 2.9 2.8e+02 3.2 0.1 1 23 946 969 946 969 0.92 21 25 0.16 15 7.2 0.5 2 23 1041 1062 1040 1062 0.93 22 25 0.00023 0.023 16.1 0.0 1 23 1066 1089 1066 1089 0.97 23 25 0.32 31 6.3 0.1 1 23 1093 1116 1093 1116 0.96 24 25 0.13 13 7.5 5.7 1 22 1155 1176 1155 1178 0.88 25 25 0.0036 0.35 12.4 0.4 1 23 1188 1211 1188 1211 0.97
Sequence Information
- Coding Sequence
- ATGGCGAAAAGGAACGCGGAGGTTGTCTTACAAATGTCAACAGTCTATCCGTTCAGATTGCAAGGGAAAAGGATCATTTGCGTCTACTGCTGCGATGAATTTGAGGACCCGGACCCATTCAGGAGCCATGTTGAAGAAAAGCACACGAAAATTAACCTGTTCACAGCCTTCGCGCATATCGGAAGGCACAAAGACTACCTCAAAGTCGATTGCACCAATCTCTGTTGCCGAATATGCTCAATGCCTTGCGAATCTATTCAAGACATAGCTCAACACCTACAAGACTCTCACACGAGTAAATTAAACCTTAACTACGAAATCGCCATGCATCCGTACAAGTTGCTAAAGGACAAATGGATCTGCCAAATTTGCCAAATGAAATTGCCCAGTTTAACCAAACTAGGCAGACATATGTCCTCACATTACTCGGAGTACACCTGCGATGCCTGCGGAAGGTGCTACTTGACCGTCGATAGTCTTAAATATCACATCAAATTCAGCCACTCGCAAAATAAAATATTATGTAGGAAATGCTGGAAGGACTTCCCTACACAGGAGGAGAGGAAAATTCACCTGCAAAATTCTATTAAATGTAGACCCTTTGGGTGCATCCATTGCGGAGAAAGATTTGTCTCGTGGGAAGCCAAGCATAGACATCTAGTCACCATGCATCAGGCTCAAGAGCAAACATATCCCTGTCCTGAATGTGACTCGGTGTTTCAAAATAGGAAACATTTCTATAATCATTACACATCGGAGCATACTCCGGATGCTCTTCTGTGCACCTGCTGCGGCAGAACGTTTACCAATAAAAGGGCCGTTTTGGAAATACGCGGGCGTAGTGAGACTGAAAATGATCCAAAAAAGAAAATAGTTCTTGTATGCCAGACGCCACAGCGGCGGAATGCCGAACTCATTCTCAGATACTCCACTGCCTATCCGTTTAAAACGCGTTTCAGTCAAATCCTATGCGCTTTTTGCCACGAAGAATATAATACTCTGTCAGACTTGAGATATCACATGAAAATAGATCACATCAACTCCGATTTCAAAAATGTTTTTTATAGGACTAATGATAATTTGATCAAAGTAGACATAACTGAAATGAAGTGTAAAGTTTGCTCTCAGAACATTCCCGATATCGATACTTTAATGACTCATTTTTCAAGAGAACATCAGAAACCCGTCAAATTCAATGCTCGTTTTGGTGTACTGCCTTACAAACAGAATGAGGAGAACCAGTGGGTGTGCGTGTATTGTCAACGGATATTCGCAGAGTTCGTAGCGTTCAAACGTCACATAGCCACGCATTTTATGCAATTCTCTTGCGATAAATGTGGCACAAGTTTCGTGTCCGACCACGCTCTCCGCGACCACCACAGACAAGTTAAATGTTTTAGAACAGCGTACCACCCTCGTAACGGCACGATCATGCGGTCTCGAAGTAACGCTGAAATAATTCTCCAATGTTCCACTGCCTGCCCTTTCAGAACTTGGAAGAGCAACTTCAGCTGTGTATTCTGCCGTCTTCAATCAAACGATCCTACCACTCTAAGAATCCACATGGCAACGAGGCACGCCAATTACGACGTGCAAGCAGCCTTTTATAAGAAACTAGGAAAAGATTTCCTCAGCATAGACATTACCGATCTGCAGTGCAAACTCTGTTTCATACCTGTACCGACTTTCGACACTTTAACATACCATTTGAAAAATGATCATCAGCAACCCATCAACCTAGACGCGCAGCTGGGCGTCTTACCGTTTAGGTTAAACGATGGATCCATTTGGAAGTGCACTATGTGCCCTAATGAGTTTAAAGACTTTATATCTTTAAAAAAACATACGGCTGAACATTTTCAGAATTACGTTTGTGATGCCTGTGGTGAAGGGTTCATAACGGAGTCGGCAATGGTTGCACATACCAAAATACCTCACGAAAACAAATATAACTGCAGTCGTTGTATCGCTACGTTCTCTACATTAGACGAAAGAAATCTCCACGTCAAAACTCAGCATACATCGACTCCTTACATGTGCATGTATTGCACAGACAAACCACGCTTTGCAAATTGGGAACTGCGGAAGAGACATTTGATGGAAGTCCACAATTACAAGACCGGCGCCGATAAATACGAATGGCGCCGAAAGGAAATTGGCGAATTAACTGAAAAAGAACGTAAACCAAAAAAGAGATTATTTCAAAGGCAAGTTAGCCAGAACCCGCAATGGAAAAACGCCGTACTTGTACTTAAACACTCGACCGCATTCCCATTTAAGACGTGTTTTAATAGAATACTGTGTTCGTATTGCCAAGACGAGCTCGAACCCATGTCAGCATTAAGAGAGCATGTAAAGACTGTACATGCCAATGCTGATTTCAACAGTGCATTTTACAAAGTAATAGATGGGCTAAAAGTTGATATCACTGAATTGAAATGTAAGATTTGCTTTCAAGACATTCCAGACGTAGACACGTTAATGACACATTTATCTAAAGAACATGAAATTCCAGTTAATTTCGATGCTCCGTTCGGGGTGCTACCTCATCGACAAAACTCATTTGGACTCTGGATGTGTCTGTACTGCGATAAAACCTTCACGAAGTTCTCGCAAATTAACGAGCACTTACGTAATCATGTTAAAACTTTCACTTGCGAAAAGTGCGGCGCCACTTTCTTATCTCCTCACGGCTTGAGACAGCACGAACGTAAGTTCCAGTGCTACAAGATGAACTACAAGCCTCGTTTTGGTAAAACTCTAAAACACCGCAGGAACACTGAAATAATACTCCAGTATTCGACTGCGTGTCCATTTCGAACTTGGGGTCAGAACTTTAACTGCGTCTTGTGTCGAGTTCAGTCAAACGACCCCATCGGTCTGCGATCTCATATGGCTGCGAGACACGCAGAATTCGATATCGACCTCGTCTTCAGCAGAAAATTACGAAAGGAATTCTTGAAAGTGGATATCACCGACTTGCAATGCAAGCTTTGCTTCATGAGAATAGACTCTATCGATGTTCTGCTGACACATTTGAAGAACGACCACAAGCAACCGATAAGTACGGACGTCCAACCTGGGGTGATACCGTTTAAACTCAACGACGGTTCTACGTGGAAGTGCGCCATGTGTACGGTGCAGTTCACGGATTTCCTATCCTTGAAGAAGCATACAGTCGAACACTATCAGAACTATGTATGCGACACGTGTGGAGAAGGTTTTATCACTGAAACTGCCCTTATCGCGCATACGAAGATACCACATGGCAACAAATTCGCTTGCGGTCGGTGCGTCGCCACCTTCTCCACAGTCGAAGAGAGAAGCGTTCATATCAAAACGCAACACACCTCACTACCGTACATGTGCATGTTTTGCAAAGATAAGCCCAGATTCGCAACTTGGGAGCTTCGGAAACGGCATCTCATGGAGTTCCACAACTACAGACCTGGTGCTGAACAGTACGAATGTACGACTTGCCATATGACTTTCAAGACGAGGTCGCAGAAGTACCATCATAATGTTAAGGCTCACCGGACTAAGAAAGAAGCTGATTTTAATTACCAGTGCGGTAGTTGTGCTAGAGTGTTTGCGTCCAAGCTGTCCCTAGACAAACACATGGCAAAAAAGCATTTTCATGTATGA
- Protein Sequence
- MAKRNAEVVLQMSTVYPFRLQGKRIICVYCCDEFEDPDPFRSHVEEKHTKINLFTAFAHIGRHKDYLKVDCTNLCCRICSMPCESIQDIAQHLQDSHTSKLNLNYEIAMHPYKLLKDKWICQICQMKLPSLTKLGRHMSSHYSEYTCDACGRCYLTVDSLKYHIKFSHSQNKILCRKCWKDFPTQEERKIHLQNSIKCRPFGCIHCGERFVSWEAKHRHLVTMHQAQEQTYPCPECDSVFQNRKHFYNHYTSEHTPDALLCTCCGRTFTNKRAVLEIRGRSETENDPKKKIVLVCQTPQRRNAELILRYSTAYPFKTRFSQILCAFCHEEYNTLSDLRYHMKIDHINSDFKNVFYRTNDNLIKVDITEMKCKVCSQNIPDIDTLMTHFSREHQKPVKFNARFGVLPYKQNEENQWVCVYCQRIFAEFVAFKRHIATHFMQFSCDKCGTSFVSDHALRDHHRQVKCFRTAYHPRNGTIMRSRSNAEIILQCSTACPFRTWKSNFSCVFCRLQSNDPTTLRIHMATRHANYDVQAAFYKKLGKDFLSIDITDLQCKLCFIPVPTFDTLTYHLKNDHQQPINLDAQLGVLPFRLNDGSIWKCTMCPNEFKDFISLKKHTAEHFQNYVCDACGEGFITESAMVAHTKIPHENKYNCSRCIATFSTLDERNLHVKTQHTSTPYMCMYCTDKPRFANWELRKRHLMEVHNYKTGADKYEWRRKEIGELTEKERKPKKRLFQRQVSQNPQWKNAVLVLKHSTAFPFKTCFNRILCSYCQDELEPMSALREHVKTVHANADFNSAFYKVIDGLKVDITELKCKICFQDIPDVDTLMTHLSKEHEIPVNFDAPFGVLPHRQNSFGLWMCLYCDKTFTKFSQINEHLRNHVKTFTCEKCGATFLSPHGLRQHERKFQCYKMNYKPRFGKTLKHRRNTEIILQYSTACPFRTWGQNFNCVLCRVQSNDPIGLRSHMAARHAEFDIDLVFSRKLRKEFLKVDITDLQCKLCFMRIDSIDVLLTHLKNDHKQPISTDVQPGVIPFKLNDGSTWKCAMCTVQFTDFLSLKKHTVEHYQNYVCDTCGEGFITETALIAHTKIPHGNKFACGRCVATFSTVEERSVHIKTQHTSLPYMCMFCKDKPRFATWELRKRHLMEFHNYRPGAEQYECTTCHMTFKTRSQKYHHNVKAHRTKKEADFNYQCGSCARVFASKLSLDKHMAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00125321;
- 90% Identity
- -
- 80% Identity
- -