Ppul048891.1
Basic Information
- Insect
- Plagodis pulveraria
- Gene Symbol
- -
- Assembly
- GCA_963890685.1
- Location
- OY982976.1:5992710-5997044[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 26 0.0078 1.3 11.2 0.2 2 23 75 97 74 97 0.96 2 26 0.41 68 5.8 0.1 3 23 125 145 123 145 0.94 3 26 0.043 7.2 8.9 2.5 1 23 149 172 149 172 0.95 4 26 4.2 7e+02 2.6 0.3 2 21 177 196 177 197 0.92 5 26 0.14 23 7.3 3.0 5 23 208 227 199 227 0.85 6 26 0.00019 0.032 16.3 0.3 1 23 234 257 234 257 0.98 7 26 0.51 84 5.5 1.9 3 23 320 341 319 341 0.94 8 26 0.5 83 5.6 0.2 2 23 366 388 365 388 0.95 9 26 0.0048 0.8 11.9 0.2 2 23 412 433 411 433 0.96 10 26 0.0012 0.19 13.9 1.4 1 21 437 457 437 458 0.96 11 26 0.61 1e+02 5.3 0.7 1 23 499 522 499 522 0.96 12 26 0.68 1.1e+02 5.1 0.3 2 23 548 570 547 570 0.95 13 26 0.0064 1.1 11.5 0.6 2 23 594 615 593 615 0.94 14 26 0.0058 0.97 11.6 0.0 1 23 619 642 619 642 0.97 15 26 1.1 1.9e+02 4.5 0.3 1 23 646 669 646 669 0.97 16 26 4.2 7e+02 2.7 0.0 3 23 764 785 763 785 0.95 17 26 0.27 46 6.4 0.1 2 23 809 831 808 831 0.95 18 26 0.00022 0.036 16.1 1.1 2 23 855 876 854 876 0.96 19 26 0.013 2.1 10.6 0.8 1 21 880 900 880 901 0.95 20 26 1.3 2.2e+02 4.3 0.8 1 23 942 965 942 965 0.95 21 26 0.091 15 7.9 0.5 2 23 1037 1058 1036 1058 0.93 22 26 0.00085 0.14 14.3 0.0 1 23 1062 1085 1062 1085 0.97 23 26 0.17 29 7.0 0.1 1 23 1089 1112 1089 1112 0.97 24 26 3.8 6.3e+02 2.8 0.6 1 23 1117 1142 1117 1142 0.88 25 26 0.16 27 7.1 5.6 1 22 1151 1172 1151 1174 0.87 26 26 0.097 16 7.8 2.3 1 23 1184 1207 1184 1207 0.97
Sequence Information
- Coding Sequence
- ATGGCGAAACGGAACGCAGAGGTTGTCTTACAAATGTCAACTATCTTTCCGTTCAGATTACAAGGTAATAAGATCATTTGTGTCTACTGCTGCGAGGAGTTCGAAGAACCAGAACCCTTCAGGAATCATGTGGATGAAAAACATACGAAGATCAATGTGTTTACAGCTTTTGCTCACGCGGGAAGGCACAAAGATTATCTCAAAGTAGATTGCTTCAACCTTAGATGCCGTATATGCTCGAAACCTTTTGAATCAATAGACGCGGTTGCACGACACTTAAAAAGTACACACACCAATAAAGAAATCAAGGTGCTCAATCTCAACTACGAAGTTGCCCTTCATCCCTACAAACTAATAAAAGACAAATGGATATGTCTTCTTTGCGGGATGAAATTGCCCACGTTGTTTAAGCTAGGGAGGCATATGTCAGCACATTATTCGGAATACACCTGCGATACTTGCGGTCGATGCTACTTGAGTGTCGATAGtcttaattatcatataaaatttAGCCATTCAGGAAAGAATGTCTGTAGAAAATGTTGGATGGATTTTCCCACATTACAAGATAAGAAAATTCACttgaaaaaatcaataaaatgtagACCTTTTGGATGTATACATTGCGGCGAAAGGTTTGCTTCGTGggaacataaacaaacacatctTGTCACCTTTCATCAAGTAAAGAGGCATACTTATCCTTGTCCAGAATGTGGTGTAGTGTTTGAAACTAGAAAAGTTTTCTACACTCATTATAGAACAGAGCACACTATGGAAGCATTTATATGCTCATGTTGCGgggCCGTATTGGAAATACGCAGACGTagtgagagtgaaagagatccaaaaaagaaaattgttcTTGTATGCCACACGCCACAGCGGCGCAATGCCGAACTCATTCTTAGATACTCCACCGCCTATCCGTTCAAAACACGCTTTAGTCAAATTTTATGCGCTTTTTGCCATGATGAATATAATGTGTTGTCAGACTTAAGGCATCACATGAAAATAGATCACATCAAttcagattttaaaaatgttttctatagGACCAATGACAATCTAATCAAAGTAGACATAACTGATATGAAATGTAAAATTTGCTCACGGGATATTCCTGACATTGATACTTTAATGACTCATTTCTCAACTGATCACCAGAAACCTGTCAAATTCAATGCTCGTTTTGGTGTATTACCATACAAACAGAATGAGGATAACCAATGGATGTGCGTATATTGCCAGCGAATGTTTGCAGAGTTTGTTGCGTTCAAGCGTCACATAGCTACACATTTCATGCAATTCTCATGCGACAAATGTGGCACAAGTTTCGTGTCTGATCATGCTCTGCGTGATCACCACCGACAGGTAAAATGTTTTAGAACAGCCTACCACCCTCGCAACGGTAAAATAATGAGGTCTCGAGGCAATGCAGAAATTATTCTCCAATGTTCTACTGCTTGTCCTTTCAGAACTTGGAAAAACAACTTCAGTTGTGTATTTTGTCGCCTCCAGTCAAACGATCCCACTAGTTTGAGAATGCATACGGCTACTCGACACACCAATTATGACGTGCAAACTgcattttataagaaattagGCAAAGATTTTCTCAGCATAGATATAACTGATTTACAATGTAAACTGTGCTTTATGCCCATAAATACTTTCgatgcattaacctatcatttaaaaaatgatCACCAACAACCCATCAATCTCGAAGCGCAGTTTGGAGTTTTACCGTTTAGACTGAATGACGGATCCATCTGGAAGTGCACTATATGTCCCAACGAATTTAAAGATTTTATATCGTTGAAAAAACACACATCAGACCATTTCCAGAATTACGTATGCGATGCCTGCGGTGAAGGTTTTATAACAGAGTCGGCGATGGTTGCACACACCAAGATACCTCACGAAAATAAATATAGCTGTAGTAGATGTATAGCTACTTTTGCATCATTGGATGAGAGAAACATACATGTGAAAACACAGCACACTTCAACTCCCTACATGTGCATGTATTGTGCGGACAAACCCCGCTTTGCCAATTGGGAACTGCGGAAGAGACATTTGATGGAAGTACACAATTACAAGACAGGCGCTGATAAATATGAATggCGCCGAAAGGATAATGGCGATTATACTGAGAAAGAACTTAAACCAAAAAAGAGATTATTTCAAAGACAAGTTAACCAGAATCCACAATGGAAAAACGCTGTTCTCGTCCTTGAACACTCAACCGCATTCCCATTTAAAACATGCTTTAATAGGATACTTTGTTCTTATTGCCAAGATGAATTCGAACCCATGGCAGCGCTAAGAGAGCATGTGAAGATTGTACATTCCAATGCTGATTTTAATAGTGCATTTTACAAAGTAATCGAAGGGTTGAAAGTTGATATTACTGAATTGAAATGCAAGATTTGCTCTCAAGACATTCCAGACATAGACACGTTAATGGCACATTTGTCGAAGGAACACGGAATACCCGTTAACTTTGATGTCCCTTTCGGAGTGTTGCCTCACAGACAGAGTGCCTCTGGACTCTGGATGTGTCTCTACTGTGATAaaagttttacaaaattttcaCAAATCAATGAACACTTGCGTAATCATGTCAAAACGTTCACTTGCGAAAAATGTGGCGCTACATTTTTGTCATCGCACGGATTGCGGCAGCACGAGCGCAAGTTCCAATGCTATAAAATGAACTACAAGCCTCGTTTCGGCAAAACTTTAAAACATCGTAGGAACACTGAAATCATTCTTCAATTTTCGACAGCGTGTCCTTTTAGAACTTGGGGACAGAATTTCAATTGTTGCTTGTGTCGAGTCCAGTCTAATGACCCTATTGGCCTACGATCTCATATGGCTTCGCGACATGCCGAGTTCGATATAGACCTAGTCTTCAGTAGAAAAATAAGAAAAGAGTTCTTGAAAGTTGATATTACCGATCTACAATGCAAGCTTTGCTTCATGCGAATAGACTCGATCGATGTTCTGCTGACACATTTGAAGAACGACCATAAACAACCGATAAGCTTAGACGTCCAACCTGGAGTTATACCGTTTAAACTCAACGACGGTTCAATATGGAAGTGTGCCATGTGCACAATCCAGTTCACAGATTTCTTGTCATTGAAAAAGCATACAGTCGAACACTTCCAAAACTACGTTTGCGATACCTGCGGCGAAGGTTTTATTACTGATACCGCGCTGATTGCTCACACGAAGATACCACACGATAACAAATATGCTTGCGGGCGTTGCGTCGCAACCTTCTCCACGGTCGAAGAGAGAATCATCCATATTAAAACTCAACACACATCACTACCATACATGTGCGTATACTGCAAAGAAAAACCCAGATTCGCAACTTGGGAACTTAGAAAGCGTCATCTGATGGAGTTCCATAACTACAAGCCTGGTGCCGATCAGTACGAATGCACGACGTGTCATATGACTTTTAAATCTAGATCACAGAAATATCATCATAATGTAAAAGCTCACAGGACGAAGAAGGAGGCGGAGTATAATTACCAATGTGGCAGCTGCTGTAGAGTATTCGCGACTAAATTGTCTTTAGACAAACACAtggcaaaaaaacattttcatgtttgA
- Protein Sequence
- MAKRNAEVVLQMSTIFPFRLQGNKIICVYCCEEFEEPEPFRNHVDEKHTKINVFTAFAHAGRHKDYLKVDCFNLRCRICSKPFESIDAVARHLKSTHTNKEIKVLNLNYEVALHPYKLIKDKWICLLCGMKLPTLFKLGRHMSAHYSEYTCDTCGRCYLSVDSLNYHIKFSHSGKNVCRKCWMDFPTLQDKKIHLKKSIKCRPFGCIHCGERFASWEHKQTHLVTFHQVKRHTYPCPECGVVFETRKVFYTHYRTEHTMEAFICSCCGAVLEIRRRSESERDPKKKIVLVCHTPQRRNAELILRYSTAYPFKTRFSQILCAFCHDEYNVLSDLRHHMKIDHINSDFKNVFYRTNDNLIKVDITDMKCKICSRDIPDIDTLMTHFSTDHQKPVKFNARFGVLPYKQNEDNQWMCVYCQRMFAEFVAFKRHIATHFMQFSCDKCGTSFVSDHALRDHHRQVKCFRTAYHPRNGKIMRSRGNAEIILQCSTACPFRTWKNNFSCVFCRLQSNDPTSLRMHTATRHTNYDVQTAFYKKLGKDFLSIDITDLQCKLCFMPINTFDALTYHLKNDHQQPINLEAQFGVLPFRLNDGSIWKCTICPNEFKDFISLKKHTSDHFQNYVCDACGEGFITESAMVAHTKIPHENKYSCSRCIATFASLDERNIHVKTQHTSTPYMCMYCADKPRFANWELRKRHLMEVHNYKTGADKYEWRRKDNGDYTEKELKPKKRLFQRQVNQNPQWKNAVLVLEHSTAFPFKTCFNRILCSYCQDEFEPMAALREHVKIVHSNADFNSAFYKVIEGLKVDITELKCKICSQDIPDIDTLMAHLSKEHGIPVNFDVPFGVLPHRQSASGLWMCLYCDKSFTKFSQINEHLRNHVKTFTCEKCGATFLSSHGLRQHERKFQCYKMNYKPRFGKTLKHRRNTEIILQFSTACPFRTWGQNFNCCLCRVQSNDPIGLRSHMASRHAEFDIDLVFSRKIRKEFLKVDITDLQCKLCFMRIDSIDVLLTHLKNDHKQPISLDVQPGVIPFKLNDGSIWKCAMCTIQFTDFLSLKKHTVEHFQNYVCDTCGEGFITDTALIAHTKIPHDNKYACGRCVATFSTVEERIIHIKTQHTSLPYMCVYCKEKPRFATWELRKRHLMEFHNYKPGADQYECTTCHMTFKSRSQKYHHNVKAHRTKKEAEYNYQCGSCCRVFATKLSLDKHMAKKHFHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00125321;
- 90% Identity
- -
- 80% Identity
- -