Asyr020428.1
Basic Information
- Insect
- Apeira syringaria
- Gene Symbol
- Lrrfip2
- Assembly
- GCA_934045895.1
- Location
- CAKOGY010000326.1:513571-532012[+]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.6e-77 2.3e-72 244.2 24.6 1 297 123 406 123 409 0.90 2 2 0.18 4.4e+03 -2.9 12.5 194 270 390 464 380 482 0.61
Sequence Information
- Coding Sequence
- ATGGGCCATCGATCAGAAGTAGCCACGCCTGATAATAGCGACGAGGAAAGTGGGGACGCCTTCACCGACGGAGACTTTGGAGACTCCGACGATGATACAGTTCTAGAATGTAATGGTAACAAATCATCAAATATTCCGGTAAACGAAACTCTCAATGAAGAAATACAAAATAATGTTACCAACGGCAACTGTTCTTATAATGGACACGAGAAATCCCCTACAGATGATCAACCTAAGTTGAACGGACGCAAGGGCGATATTCAGAATGATGTGGACAATTATAGTGCAACAGGGGAAGTGAGACGAGATTCTCATGGTGATCAAAATCCATCCATTGTAGGCATTATTGGAGACCAGCATAATCACGCGGAGCAGCGACTTGCAGCGCGACGAGCGGCGCGAGCGGAGGCGCGAGAGATACGCATGCGCGAGCTCGAACGGCAACAGAGAGAACAGGAGGACCATGCTGACAAGGCGTACGATATGTATGCAGAGACGGTCGGTCGGCGCGGCAACACGCGCCTTGCGGCCCTCAGTCCCGCCGCCACGCTGGTGCATTCACCCAGGAGGAGTTCAGAAGACTCCGCCGATGACACCTTTAACGTAAAAGACTTAAGGCACGAACTGAAAGAGGTGGAGGAAAAGTTCCGCAAGGCGATGATCTTGAACGCACAGCTGGACAACGATAAGGCGGCGCTACACTATCAGATTGAACTGCTTAAGGATCGCATTCTCGAGCTGCAAGAGGAACACGCTCAGTTACAGCGCGAGCACCGCGAGAAGTGTTCTTCGCTGGAGCGCGTGCGGCGCGAGCACGTGTCGCTGGAGCGGGAGGTGGGCGCGGCGCGGGACGCGGTGCGCGCGCGGGACGCGGCCGCTGCGCACGCGGGGCTCGTGTTCGCGGAGGCGGCGCCCGGCGCCACACACGCGGAGGGGTTCGGCGCCGTGCCGCCGCTCGCGCTCATCTCACAACAGAACGAACGGGACCTGGCCGACCACGGGGAGGGCACGCTAGACGTGCGGTTGCAGAAGCTGGTTAGCGCGAAGCAAGCCCTCGAGTCAGAGGTGCGTAAACTGAAGTTGACGCTGAACGAGGAGCGCGCCGCCAGGCAGAACGGCGTCTCCACTCGACACGATCTCGACTATGAAAATGAATTGGAGTCCCTCCGCAAGAGCGTGTCGGAGGCGAAGGGGCGCGCAGCGCGCGCGGAGGCGGAGGCGGCGCTGCAGGCGGCGGGCGTGGCGCGGCTCGAGGCGCAGCTGCAGCGGCTGCGCGCGCGGCAAGACCTGCACGACGAGCAAGAAGAGCAGCTCAAGCAGGAGCGCCGCAAACTGCAGCGGGAGGCAAGGGAAGCGATCAACCGAGTGGAGGAGTTGGAGACAGAGAACAGTCACCTGACGAAGCGGCTCGACAAACTCAAGAATGCAAAATCCGCCCTGCTCAAGGACCTGTGA
- Protein Sequence
- MGHRSEVATPDNSDEESGDAFTDGDFGDSDDDTVLECNGNKSSNIPVNETLNEEIQNNVTNGNCSYNGHEKSPTDDQPKLNGRKGDIQNDVDNYSATGEVRRDSHGDQNPSIVGIIGDQHNHAEQRLAARRAARAEAREIRMRELERQQREQEDHADKAYDMYAETVGRRGNTRLAALSPAATLVHSPRRSSEDSADDTFNVKDLRHELKEVEEKFRKAMILNAQLDNDKAALHYQIELLKDRILELQEEHAQLQREHREKCSSLERVRREHVSLEREVGAARDAVRARDAAAAHAGLVFAEAAPGATHAEGFGAVPPLALISQQNERDLADHGEGTLDVRLQKLVSAKQALESEVRKLKLTLNEERAARQNGVSTRHDLDYENELESLRKSVSEAKGRAARAEAEAALQAAGVARLEAQLQRLRARQDLHDEQEEQLKQERRKLQREAREAINRVEELETENSHLTKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00250477;
- 90% Identity
- -
- 80% Identity
- -