Acre032910.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451382.1:7674493-7697365[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 1.3 1.2e+02 4.5 0.9 1 23 546 569 546 569 0.95 2 12 0.0075 0.68 11.5 0.4 1 23 577 599 577 599 0.95 3 12 0.42 38 6.0 1.4 1 23 603 625 603 625 0.96 4 12 0.0001 0.0091 17.4 1.0 1 20 632 651 632 653 0.94 5 12 0.0082 0.74 11.4 1.0 2 21 660 679 660 680 0.92 6 12 0.00028 0.025 16.0 0.6 2 23 696 717 695 717 0.94 7 12 0.00082 0.075 14.5 0.3 1 23 722 744 722 744 0.97 8 12 0.042 3.8 9.1 4.8 1 21 753 773 753 778 0.93 9 12 4.3e-05 0.0039 18.5 2.3 1 23 786 809 786 809 0.93 10 12 0.0041 0.37 12.3 0.2 1 23 815 838 815 838 0.94 11 12 0.03 2.7 9.6 0.3 3 19 851 867 849 868 0.89 12 12 0.062 5.6 8.6 0.9 1 23 881 904 881 904 0.97
Sequence Information
- Coding Sequence
- ATGGATTGTAATGTCCATTTCCAGGTGCCAGATGGTCTGGAAGTCCAGGTCTGCTGGGAATGCCTGGCACGCGTCAAATCTGCTATCAACTTCAAGGAACAGATGCTAAAGTCTTACGACTTCCTTATCTCGTACTCTAAGGAGCACACATTCCTGGACTCTCCGAATGACTTCGGCCCTCACGCCACTATCAACCTAGAGAGGACAGCATTGGAGTGTGACGAGTGTCTGCCGGAAGATGAAGTGGTGGAGGATACTGAGACAGCAGTTGATTTTAAAGAGGAGGAGGAGATTGGGAATAAATATGGTTTCGAGGTGGCCATAAAAGAAGAAACGTATGACGACCCATACTTCCAAGATATGCCTGCTGTTGACAATGATATCACATCGGATGAAGACGTGCAACTTTCTAAACTTAAAGATACGGAGAAAGGGAAAAAGAAGAGAAAGAGTGAGAAGAAGAAAGAACAGGAGAGAGATCGGATGCCAGCCAACAAACGACCAAGAAAAACGACACGAGGTCTCTACGACATAGCTCAGTTTGAAGCTGCTTATGACCAAGTTGTCAATCACGGGGTGTCCGTCCGAAAAGCGGCTAAAATGTTCGATATCACACACGTCACCCTGCAAAGGTACAAGAAAAGACGTCAGATCACAAATTTTCCTGTCAAAGTTGGCTATGCACGTAACAGTTTTTATACAGCAGATCAGGAAACTCTCCTAACGAAATACTTGATAAAATACGCGGAAATATATCCCGGGTTATGCGTGAGGGTAGTCAGAAAGTATGCGACGGAGTTCAGTCAAAAGCTGGGTTTGAAAACTCCGAAGTCTTGGGTTGACAATGAAATGGCTGGTGTTGATTGGTACAAGAATTTTATGTGCAGGAATACAGCGTTACAACATAAAATTGATCGGCAGACTGCTAAAGAAAAAGTTAGAGTTTTCTATGATCGATTGTGGAGTACTTTATGCCAGTACAATTTTGGATCAGAAAACATCTACTCTTTAGATGAAATAGGAGTTAATATAGAAGAGTTCAGAGATAAAATTTGGCTGATGACGACGAAGAATGGCCCTATAGCTTTGAAAGAGTCTAAAGTTGTGTTCACTTACGCAGCGAACGCTAAGGGCTATGTCATAccccctttatttttaataccacCAGAGAAAAAGGAAGATAAGCCAAAAATCAACGCTGAAATCAAAACAGAAAAAGATTTGGTGAACGAATCGGATTACTCAAACGAGACAACTTTCAATGAATTCTTAAAAAATGGCGTCGATTTAAAGAACCTACCTGATTGGACGGAGGACTCTAATTTCCTGATCTTTCTAAAACATTTCACGAAGAATTTAAGAAACTCTGTGGGACCAAAACTATTGCTGCTCCTGGAGAATCAGACTTTTCATTTAAGCATTGAGGCATACAGGCTCGATGTTATATCTCCCTTCATTTCACAGGTGGACTCCCCAAAGCGCCAGAAGACTAAGAAGGACAAAGACCCCGAGAAGAAGAGTAGGAAGTTAATGAATCTCCCAGAAGAGTTGGTAGAATTGTACACTATGAGTAAGGAAGAGATGTGGGCTATCAGGATTGAGGACCTGAACAGCAAGGAGTTTCAGAAGCTTAAGTAtaggTGCGATAACTGCATTATTGCCTTCAACACTGAGAAATTGATGCATGATCATTTAAATGGTAAACACCAACCAaaaagCGAAGACTGCCATCAATGCTCAATATGCCAGGCCTATTTTATAACGAAGGACAACGTGGCCGCACACAAGGCGTTACACCAACAGGGATATAAGTGTCGGGAGTGTGGGTTCAATACTACGCTCAAACGACGTATGTTGAAACATGTTGCGAGTCACGCGCCGAGTGGGGGTGGTCATGTATGCCAGACTTGTGGGACTAGCTTTAGCACAAAATCGAAGCTAACATACCACCGTGTCGTGTGTTGTCAAGAAAGGCCACAATGTGACTGCTGCGGCAAAGTCTTCGCGAACAAAATGACGCTCAAGTACCACCTCAAAATCCTGCCTCAGAATAAAGATGATAAGCCTAAGGAGAAGTTGTTCATACCATGCAAGGGTTGTGATAAAGTGTTCCATTCGAAAAAGAGCTATAGAGCGCATGTTGTGATCCACGACGGCGTGACCTACCCCTGCCCGATCTGCGGCAAACTGTTCCAATGGAAGCGCAACCTGGCGCGACACTCGCGCAACCATCGCGAGCGACAGGCGGGCAACCTGCACGAGTGCCGCGCTTGCAGCAAGACCTTCGCGAGCAGGGACTGCTACAACAACCACATGCGGCTCAGCAAGAAGCACGTGTCCCAGGATACTTTCCCACACGAATGCAACTACTGCGGAAAGAAATTCGCTACAAAATGGTGTCTGACCGACCACATCGACTGGGATCACTTGAAGAAAATCAAATACCAATGTTCCGTCTGCTTTAAGGCATTCAAAACGGCTAAAATATTGGTGGCTCACGTCAATAATATACATGAGGGTAAGAAAAAAGAAGCTGAGGGCGAACATCTGTGCGAAATATGTGGGAAATCATACAGAACAGTGAAACGTCTAAAGGGACACGTCTGGGCGATGCACACCAAACGATCGAGCAGCAAGATATACAAATGTAAGCTGTGCCCGGCGACGTTCATGTGGCAGACCAGCATATACAAGCACATGAAGATGATGCACGACAATAATAAGAAGAGTAAGaCACCACGCGCCGTCCAACCTGTGAAGAAAGAGGAGCCctacccgggaatcgaactagCGAACCGCATGCAGTACTTCCAACAGAACATTGGCGGAAACATAAATATAGTTCACATACAGCCTTTGGGAATGACTCAGAATATTGTTTAA
- Protein Sequence
- MDCNVHFQVPDGLEVQVCWECLARVKSAINFKEQMLKSYDFLISYSKEHTFLDSPNDFGPHATINLERTALECDECLPEDEVVEDTETAVDFKEEEEIGNKYGFEVAIKEETYDDPYFQDMPAVDNDITSDEDVQLSKLKDTEKGKKKRKSEKKKEQERDRMPANKRPRKTTRGLYDIAQFEAAYDQVVNHGVSVRKAAKMFDITHVTLQRYKKRRQITNFPVKVGYARNSFYTADQETLLTKYLIKYAEIYPGLCVRVVRKYATEFSQKLGLKTPKSWVDNEMAGVDWYKNFMCRNTALQHKIDRQTAKEKVRVFYDRLWSTLCQYNFGSENIYSLDEIGVNIEEFRDKIWLMTTKNGPIALKESKVVFTYAANAKGYVIPPLFLIPPEKKEDKPKINAEIKTEKDLVNESDYSNETTFNEFLKNGVDLKNLPDWTEDSNFLIFLKHFTKNLRNSVGPKLLLLLENQTFHLSIEAYRLDVISPFISQVDSPKRQKTKKDKDPEKKSRKLMNLPEELVELYTMSKEEMWAIRIEDLNSKEFQKLKYRCDNCIIAFNTEKLMHDHLNGKHQPKSEDCHQCSICQAYFITKDNVAAHKALHQQGYKCRECGFNTTLKRRMLKHVASHAPSGGGHVCQTCGTSFSTKSKLTYHRVVCCQERPQCDCCGKVFANKMTLKYHLKILPQNKDDKPKEKLFIPCKGCDKVFHSKKSYRAHVVIHDGVTYPCPICGKLFQWKRNLARHSRNHRERQAGNLHECRACSKTFASRDCYNNHMRLSKKHVSQDTFPHECNYCGKKFATKWCLTDHIDWDHLKKIKYQCSVCFKAFKTAKILVAHVNNIHEGKKKEAEGEHLCEICGKSYRTVKRLKGHVWAMHTKRSSSKIYKCKLCPATFMWQTSIYKHMKMMHDNNKKSKTPRAVQPVKKEEPYPGIELANRMQYFQQNIGGNINIVHIQPLGMTQNIV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01094841;
- 90% Identity
- iTF_00122315;
- 80% Identity
- iTF_00122315;