Acre004800.1
Basic Information
- Insect
- Apamea crenata
- Gene Symbol
- -
- Assembly
- GCA_949629185.1
- Location
- OX451352.1:16205858-16206586[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.1e-10 6.2e-08 33.2 0.0 3 36 13 46 11 50 0.94
Sequence Information
- Coding Sequence
- ATGGAGCCACAAAAGCGGCGAAAAATATACAGTAAAACACAACTCGCCGAAGCAATCAAAGCAATTAATGACGGTACAAGTGTATATGAGGCATCAAAAAGGTATAATATTCCCAAAACTACATTACGAGACAAACGGGACGGGAAATATAAGAATGAAATTTGCGGAGTTCAGCCGGTTCTTAATTTAAGTGAAGAAAAACAGATTGTAGACTGGATTCACTACCTTGGCAAGATGGGATTTCCAGTTACAAAAGAACAATTATTAGAAGCAGTGGCTAAGCTAGTCCAAAACTTAAATCGTCCAAACCCTTTTAAAAATGGTGTGCCTGGCAGATATTGgtttgataattttataaagagaCATCCAACAGTATCTAAACGCGTTGCACAAAATCTTCCTTCAAGCCGAAATCAAGTCACAGAAGCGGCTATACGTGCATGGTTCGACAGAGTGAACAATTATTTTATGACAAATAATCTGCATCATGTTTTAGAAGATCCTAAACGAGTGTTTAACTGTGACGAAACTGCTTTCTTTTTATGCCCAAAAGAGAAAGAAGTTTTGGTCAGCAGAGGTAGCAAACGAGTGTATAATCGTGTTGCTAATGACGAAAAAGAGTGCTTGACTGTGCTTGTGAACGTTTCAGCTGACGGAAATCTAGCACCTCCAATGATACTTTTTCCGTATAAACGTTTGCCAAAAAATCTTGTGCCTACATTAGACTAG
- Protein Sequence
- MEPQKRRKIYSKTQLAEAIKAINDGTSVYEASKRYNIPKTTLRDKRDGKYKNEICGVQPVLNLSEEKQIVDWIHYLGKMGFPVTKEQLLEAVAKLVQNLNRPNPFKNGVPGRYWFDNFIKRHPTVSKRVAQNLPSSRNQVTEAAIRAWFDRVNNYFMTNNLHHVLEDPKRVFNCDETAFFLCPKEKEVLVSRGSKRVYNRVANDEKECLTVLVNVSADGNLAPPMILFPYKRLPKNLVPTLD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00761572; iTF_00761573; iTF_00709131; iTF_00709165; iTF_00709166; iTF_00709139; iTF_00709140; iTF_00709141; iTF_00709144;
- 90% Identity
- iTF_00709131;
- 80% Identity
- -