Ader004393.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388286.1:591941-596556[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.71 1.4e+04 -3.6 0.2 27 45 173 191 171 194 0.79 2 14 0.00038 7.5 6.9 0.2 21 48 262 289 258 292 0.90 3 14 0.0012 24 5.3 0.1 20 46 290 316 286 319 0.87 4 14 0.0019 37 4.7 0.1 21 50 361 390 357 395 0.90 5 14 0.00038 7.5 6.9 0.0 21 44 417 441 405 445 0.83 6 14 0.0004 7.8 6.8 0.1 21 48 494 521 490 527 0.88 7 14 0.0069 1.4e+02 2.9 0.0 23 44 525 546 522 551 0.89 8 14 0.0013 25 5.2 0.0 22 48 592 618 588 621 0.86 9 14 0.15 3e+03 -1.4 0.0 23 46 633 656 630 661 0.83 10 14 0.01 2e+02 2.3 0.0 22 52 689 718 686 720 0.92 11 14 0.021 4.1e+02 1.3 0.5 23 43 717 737 708 741 0.85 12 14 2.1e-05 0.42 10.9 0.2 21 46 743 768 735 777 0.90 13 14 0.011 2.2e+02 2.2 0.0 21 48 799 826 792 831 0.86 14 14 0.011 2.3e+02 2.2 0.3 20 45 827 852 825 859 0.89
Sequence Information
- Coding Sequence
- ATGCCTGATTCACCTCTGTGCAGAGTGTGTCTTGCGGATAATGTCAGAATGCATGCGATCTCTGGCTCCCGATATCAAGAAATGTTCGAGAAACTAGCCGGAACGACGATGTTGTCGGGGGATGGGTCGCTGGACACCCTGTGCTTCTTGTGCTACTCGCAGGTGCAGAAGCTCTGGAGATTCTTCGAGATGGCTCTCAATTCAGAGAAGAACCAGGCGAAACTGCTTGAATTCGGAGTCAAGATATCCCGATTATCAGTGGCACTGATTGAGAAAGTGAGCGTACACAACCTGTCTCTCTCAACTGTCAAGCAAACATTTGACTGCATTATAATTGACTGTATGAAGGAGGAATCAGCGCCTGTCAAAATGGAGTCATTCGGTGACAAGAGTGAGCTTGATGATGAAATTGAAGATCTCCCAGACACTGCTGATGAGGAAGAGTCTGACCCTCTCGAAGCTGTCACTGTCAAAATAGAAGCAAACGAAGCCAAAGCCTTAATCACAGCACATCCATGCGACGTATGCCCGCGTCGGCTCAACTCGGAGAGAGATTTAAAACAACACAAAAACACTGCGCACAGACTTAACTGCACCAAATGCGGCGAGACGTTCCTAGATCAATCACATTTAAAAATACACATGACATTTCACAACGAAAGTGACAGTGACATGAGTAGAGATTTGATAGTTACCACGGGGGAGAAGTTCGGTTGTGTGCTCTGCAAGAAGACTTTCACTCAAAAGGGACATTTGAAAACTCATATAATGGCCCTTCACAGTGGAGAAAGGCCGTTCGCGTGCAGCGTATGCGATAAAAGATTCGTACAGAAAAGTAATCTAAGAACGCATGTAAGAACGGCGCACACTGAAGAAAAACCGTTCACATGTACCACCTGCAAAGGAGTCTGCAACGACGAAAGCCATTTGAAGGAACACATGAATATTCACCGTGGAGAAACTTCATTAACAAGCGATATTGAGATCCAGGCGGGCGCGAAACCGTACGCGTGCGGACGCTGCGGGAAGGCGTTTACCGCGAAAGCTCATTTGAAATCGCATATAATGGCCATCCACACCGGGGAACGACCATTCGCGTGCACGATGTGCGATAAAAAATACACGCAGAAAAGCCATTTGAGGCTGCACGCGCGATTATCACACGTCGTCGAGAAACCTTTTGCCTGCGACGATTGCGAGATGAGATTCGACGATGCTGATAGCTTGAGGAAACACGCTAAAACTCACAACGAACAGAAGCCGTTCGCTTGTGTGATCTGCAATAAGGTGTTTCTCACAGATAACAATCTGAAGAAACATATGATTATTCATAATGGAGAAGTTACGTTAACAATCGATGATATCGATGAAAAGGCCCTATTGGGCACCACGAAGGTCAAACCCTTTGCTTGTGTACTGTGCAGTAAACGCTTCGGCTGGAAATCTCATTTAAAATCGCATATAATGGCAATTCACACTGGTGAAAGACCATACGCGTGTTCCGTTTGCGACAAGAAGTTCGTTCAACAAAGCAACTTAAGATTACACGCAAAAGTAGCCCACGATATAGTGAAACCATTGAACTGCGATACATGCAGCAAAGTGTTCCGCAGCGAAAATAACTTGATGAAACACAAAGCTATTCACAGTGAAGATAATGATAAAGATAGTGAAAAAGGTGACGCGAAAAAGCCTTTCGCTTGCTTGCTCTGCAGCCGGCGGTTCGGTTGGAAATCTCACTTGAAAACGCATATAATGGCGCTACACACCGGGGATAGACCGTTCGCTTGTCCGGTGTGCGAGAAGAAATACGTACAGAAAAGTTATCTCAGATTCCACATGAAAACGGCCCACCCCGGGGTGAGAGACGCCCACATGACTAACATCGGCGCTGGCAGGCCGTTCAATTGCAAAATATGCTCAGTCAAATTCACCAACAAAACAAACTTCGAGAAACACAAACGACTGCACACGGACACACCCCCCTTCCTATGTTTAATATGCGACCAGAAATTCAATTCGAAGAACGATTTAGACGCTCACAACATAAACTTGCACGCTGGAGAATTACCGTTAACATGCGAGACTTGCAACTCTAGATTCGAAGACGAAGCTGGTTTGAAGAAGCATCAGTTAACGCACGAAGCCAAACCACTTTCCTGTGACATTTGTAACAGAACGTTTCTATCAAGAAGCGCGTTACGGCGGCATCAGGTCATCCACAGCGACGAGAAACCCTTCTCATGCAAACTCTGCTCGAAAACCTTCAAGCAAGACCGAGTATTAAGGAAACACATGCAGATTCACACCGAGGAGAAGAAGTTCGGTTGTGACTTATGTGATAGGAAGTTCTACCAACGGGGCAACTTGATCAGTCATATGAGGATCCACTCCGGGGAAAAGCCGTTTGTGTGTGACCGATGTGGGAACAGCTTCAACCAGAAGAGTCACTTAAGAACTCATGTGTTGTTCATGCATACATCTGAGAAGCCGTTCTCTTGTACGCAGTGTAACAAGAAGTTCAGGCTTCGGAGCTGTTTGCGGAACCATATGATGGTGCATACGGGTGAAAGACCGTATCCGTGTGACAGATGTGACAAGAAATATTACAAGAAGGGTGAATTAAAATCACATGTGTTGAAAATGCACTCGTAG
- Protein Sequence
- MPDSPLCRVCLADNVRMHAISGSRYQEMFEKLAGTTMLSGDGSLDTLCFLCYSQVQKLWRFFEMALNSEKNQAKLLEFGVKISRLSVALIEKVSVHNLSLSTVKQTFDCIIIDCMKEESAPVKMESFGDKSELDDEIEDLPDTADEEESDPLEAVTVKIEANEAKALITAHPCDVCPRRLNSERDLKQHKNTAHRLNCTKCGETFLDQSHLKIHMTFHNESDSDMSRDLIVTTGEKFGCVLCKKTFTQKGHLKTHIMALHSGERPFACSVCDKRFVQKSNLRTHVRTAHTEEKPFTCTTCKGVCNDESHLKEHMNIHRGETSLTSDIEIQAGAKPYACGRCGKAFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFACDDCEMRFDDADSLRKHAKTHNEQKPFACVICNKVFLTDNNLKKHMIIHNGEVTLTIDDIDEKALLGTTKVKPFACVLCSKRFGWKSHLKSHIMAIHTGERPYACSVCDKKFVQQSNLRLHAKVAHDIVKPLNCDTCSKVFRSENNLMKHKAIHSEDNDKDSEKGDAKKPFACLLCSRRFGWKSHLKTHIMALHTGDRPFACPVCEKKYVQKSYLRFHMKTAHPGVRDAHMTNIGAGRPFNCKICSVKFTNKTNFEKHKRLHTDTPPFLCLICDQKFNSKNDLDAHNINLHAGELPLTCETCNSRFEDEAGLKKHQLTHEAKPLSCDICNRTFLSRSALRRHQVIHSDEKPFSCKLCSKTFKQDRVLRKHMQIHTEEKKFGCDLCDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHTSEKPFSCTQCNKKFRLRSCLRNHMMVHTGERPYPCDRCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00119781;
- 90% Identity
- iTF_00119781;
- 80% Identity
- iTF_00119781;