Ader004393.1
Basic Information
- Insect
- Anticlea derivata
- Gene Symbol
- -
- Assembly
- GCA_947579855.1
- Location
- OX388286.1:591941-596556[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 0.0026 0.13 12.9 0.8 1 23 171 194 171 194 0.96 2 23 0.00044 0.022 15.3 2.1 2 23 197 218 196 218 0.94 3 23 6e-05 0.003 18.1 1.7 3 23 239 260 237 260 0.94 4 23 1.1e-07 5.7e-06 26.6 0.7 1 23 266 289 266 289 0.97 5 23 0.0012 0.061 13.9 3.5 1 23 295 317 295 317 0.98 6 23 3.7e-05 0.0019 18.7 0.2 1 23 336 359 336 359 0.95 7 23 2e-05 0.001 19.5 3.0 1 23 365 388 365 388 0.95 8 23 2.6e-05 0.0013 19.2 0.2 1 23 394 416 394 416 0.97 9 23 0.00039 0.019 15.5 0.2 1 23 422 444 422 444 0.97 10 23 0.011 0.54 10.9 0.7 1 23 469 492 469 492 0.94 11 23 1.7e-06 8.7e-05 22.9 0.2 1 23 498 521 498 521 0.96 12 23 0.00013 0.0066 17.0 0.7 2 23 528 549 527 549 0.95 13 23 0.029 1.5 9.6 1.0 1 23 566 589 566 589 0.94 14 23 9.8e-05 0.0049 17.4 0.8 1 23 595 618 595 618 0.97 15 23 0.00015 0.0073 16.8 3.7 1 23 635 657 635 657 0.97 16 23 0.015 0.77 10.5 0.3 1 23 663 686 663 686 0.87 17 23 0.00084 0.042 14.4 0.4 2 23 693 714 692 714 0.97 18 23 0.0003 0.015 15.9 0.4 2 23 720 741 719 741 0.95 19 23 0.0001 0.005 17.4 2.5 1 23 747 769 747 769 0.98 20 23 6.6e-06 0.00033 21.1 0.5 3 23 777 797 775 797 0.98 21 23 9.3e-05 0.0047 17.5 2.4 1 23 803 826 803 826 0.92 22 23 7.2e-05 0.0036 17.8 5.4 1 23 832 854 832 854 0.98 23 23 0.0003 0.015 15.8 1.1 1 23 860 883 860 883 0.96
Sequence Information
- Coding Sequence
- ATGCCTGATTCACCTCTGTGCAGAGTGTGTCTTGCGGATAATGTCAGAATGCATGCGATCTCTGGCTCCCGATATCAAGAAATGTTCGAGAAACTAGCCGGAACGACGATGTTGTCGGGGGATGGGTCGCTGGACACCCTGTGCTTCTTGTGCTACTCGCAGGTGCAGAAGCTCTGGAGATTCTTCGAGATGGCTCTCAATTCAGAGAAGAACCAGGCGAAACTGCTTGAATTCGGAGTCAAGATATCCCGATTATCAGTGGCACTGATTGAGAAAGTGAGCGTACACAACCTGTCTCTCTCAACTGTCAAGCAAACATTTGACTGCATTATAATTGACTGTATGAAGGAGGAATCAGCGCCTGTCAAAATGGAGTCATTCGGTGACAAGAGTGAGCTTGATGATGAAATTGAAGATCTCCCAGACACTGCTGATGAGGAAGAGTCTGACCCTCTCGAAGCTGTCACTGTCAAAATAGAAGCAAACGAAGCCAAAGCCTTAATCACAGCACATCCATGCGACGTATGCCCGCGTCGGCTCAACTCGGAGAGAGATTTAAAACAACACAAAAACACTGCGCACAGACTTAACTGCACCAAATGCGGCGAGACGTTCCTAGATCAATCACATTTAAAAATACACATGACATTTCACAACGAAAGTGACAGTGACATGAGTAGAGATTTGATAGTTACCACGGGGGAGAAGTTCGGTTGTGTGCTCTGCAAGAAGACTTTCACTCAAAAGGGACATTTGAAAACTCATATAATGGCCCTTCACAGTGGAGAAAGGCCGTTCGCGTGCAGCGTATGCGATAAAAGATTCGTACAGAAAAGTAATCTAAGAACGCATGTAAGAACGGCGCACACTGAAGAAAAACCGTTCACATGTACCACCTGCAAAGGAGTCTGCAACGACGAAAGCCATTTGAAGGAACACATGAATATTCACCGTGGAGAAACTTCATTAACAAGCGATATTGAGATCCAGGCGGGCGCGAAACCGTACGCGTGCGGACGCTGCGGGAAGGCGTTTACCGCGAAAGCTCATTTGAAATCGCATATAATGGCCATCCACACCGGGGAACGACCATTCGCGTGCACGATGTGCGATAAAAAATACACGCAGAAAAGCCATTTGAGGCTGCACGCGCGATTATCACACGTCGTCGAGAAACCTTTTGCCTGCGACGATTGCGAGATGAGATTCGACGATGCTGATAGCTTGAGGAAACACGCTAAAACTCACAACGAACAGAAGCCGTTCGCTTGTGTGATCTGCAATAAGGTGTTTCTCACAGATAACAATCTGAAGAAACATATGATTATTCATAATGGAGAAGTTACGTTAACAATCGATGATATCGATGAAAAGGCCCTATTGGGCACCACGAAGGTCAAACCCTTTGCTTGTGTACTGTGCAGTAAACGCTTCGGCTGGAAATCTCATTTAAAATCGCATATAATGGCAATTCACACTGGTGAAAGACCATACGCGTGTTCCGTTTGCGACAAGAAGTTCGTTCAACAAAGCAACTTAAGATTACACGCAAAAGTAGCCCACGATATAGTGAAACCATTGAACTGCGATACATGCAGCAAAGTGTTCCGCAGCGAAAATAACTTGATGAAACACAAAGCTATTCACAGTGAAGATAATGATAAAGATAGTGAAAAAGGTGACGCGAAAAAGCCTTTCGCTTGCTTGCTCTGCAGCCGGCGGTTCGGTTGGAAATCTCACTTGAAAACGCATATAATGGCGCTACACACCGGGGATAGACCGTTCGCTTGTCCGGTGTGCGAGAAGAAATACGTACAGAAAAGTTATCTCAGATTCCACATGAAAACGGCCCACCCCGGGGTGAGAGACGCCCACATGACTAACATCGGCGCTGGCAGGCCGTTCAATTGCAAAATATGCTCAGTCAAATTCACCAACAAAACAAACTTCGAGAAACACAAACGACTGCACACGGACACACCCCCCTTCCTATGTTTAATATGCGACCAGAAATTCAATTCGAAGAACGATTTAGACGCTCACAACATAAACTTGCACGCTGGAGAATTACCGTTAACATGCGAGACTTGCAACTCTAGATTCGAAGACGAAGCTGGTTTGAAGAAGCATCAGTTAACGCACGAAGCCAAACCACTTTCCTGTGACATTTGTAACAGAACGTTTCTATCAAGAAGCGCGTTACGGCGGCATCAGGTCATCCACAGCGACGAGAAACCCTTCTCATGCAAACTCTGCTCGAAAACCTTCAAGCAAGACCGAGTATTAAGGAAACACATGCAGATTCACACCGAGGAGAAGAAGTTCGGTTGTGACTTATGTGATAGGAAGTTCTACCAACGGGGCAACTTGATCAGTCATATGAGGATCCACTCCGGGGAAAAGCCGTTTGTGTGTGACCGATGTGGGAACAGCTTCAACCAGAAGAGTCACTTAAGAACTCATGTGTTGTTCATGCATACATCTGAGAAGCCGTTCTCTTGTACGCAGTGTAACAAGAAGTTCAGGCTTCGGAGCTGTTTGCGGAACCATATGATGGTGCATACGGGTGAAAGACCGTATCCGTGTGACAGATGTGACAAGAAATATTACAAGAAGGGTGAATTAAAATCACATGTGTTGAAAATGCACTCGTAG
- Protein Sequence
- MPDSPLCRVCLADNVRMHAISGSRYQEMFEKLAGTTMLSGDGSLDTLCFLCYSQVQKLWRFFEMALNSEKNQAKLLEFGVKISRLSVALIEKVSVHNLSLSTVKQTFDCIIIDCMKEESAPVKMESFGDKSELDDEIEDLPDTADEEESDPLEAVTVKIEANEAKALITAHPCDVCPRRLNSERDLKQHKNTAHRLNCTKCGETFLDQSHLKIHMTFHNESDSDMSRDLIVTTGEKFGCVLCKKTFTQKGHLKTHIMALHSGERPFACSVCDKRFVQKSNLRTHVRTAHTEEKPFTCTTCKGVCNDESHLKEHMNIHRGETSLTSDIEIQAGAKPYACGRCGKAFTAKAHLKSHIMAIHTGERPFACTMCDKKYTQKSHLRLHARLSHVVEKPFACDDCEMRFDDADSLRKHAKTHNEQKPFACVICNKVFLTDNNLKKHMIIHNGEVTLTIDDIDEKALLGTTKVKPFACVLCSKRFGWKSHLKSHIMAIHTGERPYACSVCDKKFVQQSNLRLHAKVAHDIVKPLNCDTCSKVFRSENNLMKHKAIHSEDNDKDSEKGDAKKPFACLLCSRRFGWKSHLKTHIMALHTGDRPFACPVCEKKYVQKSYLRFHMKTAHPGVRDAHMTNIGAGRPFNCKICSVKFTNKTNFEKHKRLHTDTPPFLCLICDQKFNSKNDLDAHNINLHAGELPLTCETCNSRFEDEAGLKKHQLTHEAKPLSCDICNRTFLSRSALRRHQVIHSDEKPFSCKLCSKTFKQDRVLRKHMQIHTEEKKFGCDLCDRKFYQRGNLISHMRIHSGEKPFVCDRCGNSFNQKSHLRTHVLFMHTSEKPFSCTQCNKKFRLRSCLRNHMMVHTGERPYPCDRCDKKYYKKGELKSHVLKMHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00120151;
- 90% Identity
- iTF_00120151;
- 80% Identity
- iTF_00120151;