Basic Information

Insect: Anticlea derivata
Gene Symbol: -
Assembly: GCA_947579855.1
Location: OX388268.1:8853853-8873367[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 20 0.0001 0.005 17.3 1.5 1 23 412 434 412 434 0.96

2 20 0.00033 0.016 15.7 1.0 1 20 440 459 440 462 0.94

3 20 0.00081 0.04 14.5 5.6 1 23 481 503 481 503 0.98

4 20 0.00011 0.0057 17.2 4.1 1 23 509 531 509 531 0.99

5 20 4.3e-05 0.0022 18.5 5.3 1 23 537 559 537 559 0.97

6 20 1.1e-05 0.00055 20.4 8.3 1 23 565 587 565 587 0.97

7 20 8.3e-07 4.2e-05 23.9 2.9 1 23 593 615 593 615 0.98

8 20 0.00012 0.006 17.1 6.7 1 23 621 643 621 643 0.97

9 20 2.3e-05 0.0011 19.4 6.4 1 23 649 671 649 671 0.98

10 20 5.7e-07 2.9e-05 24.4 1.9 1 23 677 699 677 699 0.98

11 20 5.8e-05 0.0029 18.1 7.9 1 23 705 727 705 727 0.98

12 20 0.00015 0.0077 16.8 6.8 1 23 733 755 733 755 0.97

13 20 7.4e-06 0.00037 20.9 5.1 1 23 761 783 761 783 0.98

14 20 6.4e-06 0.00032 21.1 6.6 1 23 789 811 789 811 0.97

15 20 1.3e-05 0.00064 20.2 5.2 1 23 817 839 817 839 0.98

16 20 2.8e-06 0.00014 22.3 3.8 2 23 846 867 845 867 0.98

17 20 2e-05 0.00098 19.6 8.0 1 23 873 895 873 895 0.97

18 20 2e-06 0.0001 22.7 6.5 1 23 901 923 901 923 0.98

19 20 0.00039 0.02 15.5 0.3 1 23 930 952 930 952 0.97

20 20 0.03 1.5 9.6 4.7 1 23 962 984 962 984 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	20	0.0001	0.005	17.3	1.5	1	23	412	434	412	434	0.96
2	20	0.00033	0.016	15.7	1.0	1	20	440	459	440	462	0.94
3	20	0.00081	0.04	14.5	5.6	1	23	481	503	481	503	0.98
4	20	0.00011	0.0057	17.2	4.1	1	23	509	531	509	531	0.99
5	20	4.3e-05	0.0022	18.5	5.3	1	23	537	559	537	559	0.97
6	20	1.1e-05	0.00055	20.4	8.3	1	23	565	587	565	587	0.97
7	20	8.3e-07	4.2e-05	23.9	2.9	1	23	593	615	593	615	0.98
8	20	0.00012	0.006	17.1	6.7	1	23	621	643	621	643	0.97
9	20	2.3e-05	0.0011	19.4	6.4	1	23	649	671	649	671	0.98
10	20	5.7e-07	2.9e-05	24.4	1.9	1	23	677	699	677	699	0.98
11	20	5.8e-05	0.0029	18.1	7.9	1	23	705	727	705	727	0.98
12	20	0.00015	0.0077	16.8	6.8	1	23	733	755	733	755	0.97
13	20	7.4e-06	0.00037	20.9	5.1	1	23	761	783	761	783	0.98
14	20	6.4e-06	0.00032	21.1	6.6	1	23	789	811	789	811	0.97
15	20	1.3e-05	0.00064	20.2	5.2	1	23	817	839	817	839	0.98
16	20	2.8e-06	0.00014	22.3	3.8	2	23	846	867	845	867	0.98
17	20	2e-05	0.00098	19.6	8.0	1	23	873	895	873	895	0.97
18	20	2e-06	0.0001	22.7	6.5	1	23	901	923	901	923	0.98
19	20	0.00039	0.02	15.5	0.3	1	23	930	952	930	952	0.97
20	20	0.03	1.5	9.6	4.7	1	23	962	984	962	984	0.99

Sequence Information

Coding Sequence: ATGAATCCGGATCATCACAACATCAATACGGGTGGAGGCCAGCCTCCTGGGAGTTCAGAGTCCCAGAATCAACGAGTGCAGGGTCAGCAGCAGCAAGTTAGTCTGCCTGCTACGACATCTGCCACCGATTTGCGAGTAAATTCGGCAGCTGTGAACGTTGCATTGTCCAGCGTAGCGAAGTATTGGGTGTTTACGAATTTATTCCCTGGGCCGATTCCTCAAGTCTCCGTCTATGGACTTCCTACTGGAACAAGAATTGAAAATGGAAAGGCAGTGCAGGACCTCGGGCAAGCACATGCAAGTATTCTCAATGGAGACCCAAACATCATTCTCGGGCACCACGGAGGGCAGTCTCAGGTCACAGTATCAGCTGCACAACAGATTCCTGTTTCACAGATCATCGCCACACAGTCTGGTCAAGCACATGAAGCATTGGTGGCACACAGCCAACAGCAGGATCTCCAGGCCTCCAACCAGGTCCAGGTCACCACCTCTCACCACCAGGTACCCAATAACCGGGTCGAATTTGTCCAACACCATAACATTGATATGGGTCACCACGCACAGCAACAACACATAATGCAGCAACAGCTTATGGCGGCGGCGCGGCCAGAACACACCAATCAGCAGATACAACTGACGGTCAGCGAAGACGGCATCGTGACAGTCGTGGAGCCTGGCAGCAGCAAAATGGTGGAGAAGGAGGACCTGCATGAGACCATAAAGCTACCGGCCGATCATACGCTCACCGTGCATCAGCTGCAGCAGATTGTTGGACAGCAAGTGCTAGACAGCGTGGTTCGCATAGAGCAAGCCACCGGTGAACCCGCGAACATTCTCGTTACTCACAACCCGGACGGCACCACGTCGATCGAAGCGAGCGCGGGCGACCCGCTATCCATCGTCAAAGATGAGAAGAGCGGAGGGAAAATGGAGACGGCGCAGTTCGCTATACCGACCGAGATCAAGGAGATGAAGGGCATTGATTTGAAGACTGTAAATGCGATGAACATGGAGGGTGCTGTGGTGAAGATATCGACAGGGGCACCAGACCACGACCTCCACGCCATGTACAAAGTGAACGTGGAAGATCTATCGCAGCTGTTAGCGTACCACGAAGTATTCGGCAAGATGGGCCCCGATGGACAGCCGCAGGCCAAAGTTCCGGATATAGAAATAGAAGTACCAGGGACGAGTTCTGGAATATCGGAGGCGGAGTCATCGCCCGGCCACCACGCTTGTGATATCTGTGGGAAAATATTCCAGTTCCGGTATCAGCTTATTGTTCACAGACGGTACCACGGCGAGTCCAAACCTTTTACGTGCCAAGTTTGCGGCACGTCGTTCGCAAATCCTGTCGAACTATCACGTCACGGGAAATGCCATCTTGCCGGTGACCCCGCTGAAAGGCATGCCAAGAGAATGGCCCAAGACAAACCGTACGCATGCAGCACTTGCCATAAAACTTTCTTGCGTAAGGAGCATCTAAACAACCATGTACGCAGTCACACGGGCGAAACTCCATACAGATGCGAGTTCTGCGCCAAAACGTTCACCCGCAAGGAGCACATGGTGAACCACGTGCGGAAACACACGGGCGAGACGCCGCACAGATGCGACATTTGTAAGAAAAGCTTCACAAGAAAGGAACACTTCATGAACCATGTCATGTGGCATACAGGTGAAACGCCGCACCATTGTACAGTTTGTGGAAAGAAGTATACTAGAAAGGAGCATTTGACAAACCATATGAGATCGCACACGAACGATACTCCGTTCCGGTGCGATCTATGCGGGAAGTCCTTCACGAGAAAAGAGCACTACACAAATCACATTATGTGGCACACTGGCGAAACCCCGCACCGTTGCGACTTCTGCTCAAAAACGTTCACCCGCAAAGAGCATCTACTAAACCACGTCAGGCAGCACACGGGCGAATCGCCCCATCGCTGTAACTACTGCTCCAAGTCGTTCACGAGGCGCGAACATCTGGTCAATCACGTGCGGCAACATACAGGGGAGACGCCATTCCAGTGCGGATACTGCCCCAAAGCGTTCACGAGGAAAGATCACCTGGTGAACCACGTGCGGCAACACACGGGCGAGTCCCCGCACAAGTGCTCGTTCTGCACGAAGTCGTTCACGCGCAAGGAGCACCTCACGAACCACGTGCGGCAGCACACCGGCGAGTCGCCGCACCGCTGCACATTCTGCGCCAAGTCCTTCACCAGGAAGGAGCATCTCACCAATCATGTTAGACAGCATACGGGCGAAACGCCACACAAGTGCACGTATTGCCCGCGCGCGTTCTCGAGAAAGGAGCATCTGAACAGCCACGTGCGGCAACACACGGGCGTCACTCCGCACTCCTGCTCTTACTGTAACAAGAGCTTTACCAGGAAGGAGCATCTCGTCAACCACGTACGGAAACACACCGGCGAAACTCCATTCAAGTGCACGTTCTGTTCGAAGTCATTCTCCCGAAAGGAGCATCTCACGAATCACGTGAACTTGCATACTGGGGAGACGCCGAACAAATGCCCGTTCTGCACTAAAACCTTCTCTAGAAAGGAGCATCTTACCAACCATGTCAGAATACACACGGGCGAATCGCCGCACCGCTGTGAGTTCTGTCAAAAGACGTTCACTCGGAAGGAACACCTCACGAACCACATGAAGCAACATACGGGCGACGCGGCGCACACGTGCAAGATCTGCCAGAAACCATTCACAAGGAAGGAGCATTTGCAAACACACATGAGGTATCATAGTAGCGACGAGCGTCCGTACAGTTGCGGCGAATGCGGCAAATCTTTCCCACTGAAGGGCAACCTCATGTTCCACGAGAGATCCCACAACAAGGCTGGAGCCGGCCCAAGGCCGTTCCAATGTGATATCTGTTCTAAGGACTTTATGTGTAAAGGGCATTTGCTAACCCACCGGCGGATACACGCCGACGCAGGCGAGGAAGCCCCTGCCGAGCCCCGGGCGGAGGCTGAGGAGTGTCTGACTGTCACCACTGACTGCACAAACAAATGCATCAAGGTGGAGCTTGAGACCGTCGAAAGAGCTGAACCAAGATCATCAGTAGAAAATGGACCAACTGAAAACAATGTAGTAGTTCAGCCTGCACTCAATGATTCGGCAAATCACATTGTGACGCAAACTCAAAACACTGTGATGCAGATAAGTAGCCAAGTGCGCGTCCCTTCCTCGAGCCCGAGCGGCGGTGTCACCAGCGGTACATTCACCCACACGGTGACCACACAACACCACGCCGGCACCACCATCTCTCACCACCCTGTGACCGTGAACTATTAG
Protein Sequence: MNPDHHNINTGGGQPPGSSESQNQRVQGQQQQVSLPATTSATDLRVNSAAVNVALSSVAKYWVFTNLFPGPIPQVSVYGLPTGTRIENGKAVQDLGQAHASILNGDPNIILGHHGGQSQVTVSAAQQIPVSQIIATQSGQAHEALVAHSQQQDLQASNQVQVTTSHHQVPNNRVEFVQHHNIDMGHHAQQQHIMQQQLMAAARPEHTNQQIQLTVSEDGIVTVVEPGSSKMVEKEDLHETIKLPADHTLTVHQLQQIVGQQVLDSVVRIEQATGEPANILVTHNPDGTTSIEASAGDPLSIVKDEKSGGKMETAQFAIPTEIKEMKGIDLKTVNAMNMEGAVVKISTGAPDHDLHAMYKVNVEDLSQLLAYHEVFGKMGPDGQPQAKVPDIEIEVPGTSSGISEAESSPGHHACDICGKIFQFRYQLIVHRRYHGESKPFTCQVCGTSFANPVELSRHGKCHLAGDPAERHAKRMAQDKPYACSTCHKTFLRKEHLNNHVRSHTGETPYRCEFCAKTFTRKEHMVNHVRKHTGETPHRCDICKKSFTRKEHFMNHVMWHTGETPHHCTVCGKKYTRKEHLTNHMRSHTNDTPFRCDLCGKSFTRKEHYTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCSKSFTRREHLVNHVRQHTGETPFQCGYCPKAFTRKDHLVNHVRQHTGESPHKCSFCTKSFTRKEHLTNHVRQHTGESPHRCTFCAKSFTRKEHLTNHVRQHTGETPHKCTYCPRAFSRKEHLNSHVRQHTGVTPHSCSYCNKSFTRKEHLVNHVRKHTGETPFKCTFCSKSFSRKEHLTNHVNLHTGETPNKCPFCTKTFSRKEHLTNHVRIHTGESPHRCEFCQKTFTRKEHLTNHMKQHTGDAAHTCKICQKPFTRKEHLQTHMRYHSSDERPYSCGECGKSFPLKGNLMFHERSHNKAGAGPRPFQCDICSKDFMCKGHLLTHRRIHADAGEEAPAEPRAEAEECLTVTTDCTNKCIKVELETVERAEPRSSVENGPTENNVVVQPALNDSANHIVTQTQNTVMQISSQVRVPSSSPSGGVTSGTFTHTVTTQHHAGTTISHHPVTVNY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00704247;
90% Identity: iTF_00701278;
80% Identity: -