Acar021859.1
Basic Information
- Insect
- Anthocharis cardamines
- Gene Symbol
- -
- Assembly
- GCA_905404175.1
- Location
- FR989963.1:10614259-10622848[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.2e-10 2.9e-07 30.4 0.0 4 39 163 199 160 203 0.90 2 4 1.7e-12 1.2e-09 38.1 0.1 1 39 214 252 214 255 0.94 3 4 6.6e-16 4.5e-13 49.0 0.1 2 45 270 314 269 314 0.96 4 4 4.7e-18 3.2e-15 55.9 0.0 1 44 321 365 321 366 0.95
Sequence Information
- Coding Sequence
- ATGTCCGGATACGGATCATTTCAAGTAAAGTGTGAACCGCATCCAGACGAAGAGGATAATTCACAATTCGGCAATAACTATCGCACCCAACTTCTGGTCAAATTAGAGCCAGATTCACAATTCCACGGCAATGTCTCCACCCATCTATTGGATCAATTGCAGTTTTCCTCTGAGCTGGTGCCAGTCCCAGCGGCGCCATCAGCGACCCCCGTGCGAGAGGATTTGCCAGCGCCGCGTGAAGCGTCTCTCGCTGTACTCGAACCAGCCAAGAGTAACAGCTTGTTGGGTTCAAAGTTGATGGAAAAACATTTGTCGATATCGAGTTCCACAAATATATTGGATTCTTCTGATTTCGCGCCACTTCTCAATATTAAAGACGAGCCTCTCTCTGAAGGAGAAGGTCAACAGTTGAGTGGCGATGAAGCGAGTGGAAGCAGCACCCCAGAACCAAGCGGTCGAGGGGCTCCGAAGACCTGGTCGCAGAAGGACATGGAGAAAGCGTTAGATGCACTTAAGAACCACCACATGAGTTTAACGAAGGCTTCAGCCACATACGGCATACCGTCCACGACGCTCTGGCAGCGAGCTCACCGGCTCGGCATCGACACTCCTAAAAAGGAAGGAGCTTCAAAGTCTTGGAGCGAGGAAGACCTCAAAGGCGCTCTGCACGCGCTGCGGACCGGCGCCATCTCCGCGAACAAGGCTAGCAAAGCTTACGGCATTCCGAGCAGCACCCTGTACAAGATAGCGCGCCGCGAGGGCATCCGGCTGGCGGCGCCGTTCAACGCGGCCCCGACGGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGACGCCATCCGCTGCGGCGCGGCGTCCGTGCAGCGCGCCGCCTCGCGCTACGGCATACCCACGGGGACGCTGTATGGGCGTTGCAAGCGTGAAGGCATCGAGCTGTCCCGCTCCAACCCCACGCCCTGGTCTGAGGACGCCATGGGGGAGGCTTTGGAGGCCGTCAGAGTCGGTCAGATGTCAATAAACCAAGCGGCCATCCACTTCAACCTGCCGTACTCGTCCCTCTACGGCCGCTTCAAGAGGTGCAAATATCAGATCTCACAGGAATATCCACAGTTACAGTCTCAAGACAACCGTCCCGATGAATTCGGCCCTCAAGATCAGGGCCTGACTCAACAGTACCCCTACCCCGGGCTGCAGGCCTACGAGGCGGAGCCCTACCGCTCCAGCGAGGTGACGTCCCTGCAGGGCGTGCAGCGGCACTACAGCCAGGCCATGTTCCACGCGCAGTGCCCCGCCACCAGCTGA
- Protein Sequence
- MSGYGSFQVKCEPHPDEEDNSQFGNNYRTQLLVKLEPDSQFHGNVSTHLLDQLQFSSELVPVPAAPSATPVREDLPAPREASLAVLEPAKSNSLLGSKLMEKHLSISSSTNILDSSDFAPLLNIKDEPLSEGEGQQLSGDEASGSSTPEPSGRGAPKTWSQKDMEKALDALKNHHMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKSWSEEDLKGALHALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALDAIRCGAASVQRAASRYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHFNLPYSSLYGRFKRCKYQISQEYPQLQSQDNRPDEFGPQDQGLTQQYPYPGLQAYEAEPYRSSEVTSLQGVQRHYSQAMFHAQCPATS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01561942; iTF_00357344; iTF_00358443;
- 90% Identity
- -
- 80% Identity
- -