Ccro023533.1
Basic Information
- Insect
- Colias croceus
- Gene Symbol
- -
- Assembly
- GCA_905220415.1
- Location
- HG991967.1:548618-557526[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.8e-10 2.5e-07 30.7 0.0 4 39 163 199 160 203 0.90 2 4 4.8e-12 1.5e-09 37.8 0.1 1 39 214 252 214 255 0.94 3 4 1.4e-15 4.5e-13 49.1 0.1 2 45 270 314 269 314 0.96 4 4 2.5e-18 7.9e-16 57.9 0.0 1 44 321 365 321 366 0.95
Sequence Information
- Coding Sequence
- ATGCCTGGCTACGGACCGTCTCAAGTAAAGTGTGAGCCGCTGTCTGACGAAGAGGATTCGCAGTTTGGAAAACACTATAATACAGAACTGCTTCCAATTAAAATAGATCCAGATTCACAATTCGATGACAATGTTACAACACATTTATTGGATCAATTACAGTTTACCTCAGAGCTGGTGCCTGTTCCCGCGGCTCCAACAGCCACTCCAGTCCGGGAAGACCTTCCAGCACCCCACGAGACCTCCCTTGCGATGTTGCAACCAGCTAAGAATACCACTTTGGGTTCAGCATTAATAGATAAACACATGTCCATGTCCTGTACAAATGAAATTCTGGATACATCTGATTTTGCTCCACTTCTGTCTATTAAAGATGAACCGCTATCTGAAGGAGAAAGCCAACAATTAAGTGGAGATGAAACAAGTGAATGCAGCAGTATTCCAGAAGTTAGCAGTAGAGGTGCTCCAAAGACCTGGTCGCAAAAGGACATGGAAAAAGCTCTGGATGCCTTGAAAAATCACAACATGAGCCTGACTAAAGCTTCAGCCACATATGGCATACCATCTACAACACTATGGCAACGTGCGCATCGTTTGGGTATCGATACGCCAAAGAAGGAAGGAGCTTCTAAGACTTGGAGTGAAGAAGATCTGAAGGGAGCTTTGCAGGCTTTGCGGACTGGGGCTATATCAGCTAATAAAGCTAGTAAAGCATACGGTATACCCAGCAGCACGCTATACAAGATAGCGCGCCGCGAGGGCATCCGCCTGGCCGCGCCATTCAACGCGGCGCCGACCGCGTGGCGCCGCGCCGACCTGCAGCGCGCGCTCGACGCCATCCGCTGCGGCGCCGCGTCCGTGCAGCGCGCGGCTTCGCGATACGGGATACCTACGGGTACTCTCTACGGTCGGTGCAAGCGAGAAGGCATCGAGCTATCCCGCTCTAACCCCACACCATGGTCAGAGGACGCGATGGGAGAAGCGCTGGAAGCTGTCAGAGTGGGCCAAATGTCAATAAACCAGGCAGCCATTCACTACAATCTGCCGTATTCCTCGCTGTACGGCCGCTTCAAGAGGTGCAAATATCAGGTGCTTCAGGACCCACAAACACTACCAGAAAACAAACCGGAAGAGCATTCAGAGATTCAAAACCAAGAATTCCATTACCCGACCCTTAACTACGATTCCGAGTACATGGGCGAGGTATCTTCAATGCAAAGTCTGCAGGAGCACTACAGCCAGGCAATGTACTACGCGCAGTGCAATGTTACCAGCTGA
- Protein Sequence
- MPGYGPSQVKCEPLSDEEDSQFGKHYNTELLPIKIDPDSQFDDNVTTHLLDQLQFTSELVPVPAAPTATPVREDLPAPHETSLAMLQPAKNTTLGSALIDKHMSMSCTNEILDTSDFAPLLSIKDEPLSEGESQQLSGDETSECSSIPEVSSRGAPKTWSQKDMEKALDALKNHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGASKTWSEEDLKGALQALRTGAISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTAWRRADLQRALDAIRCGAASVQRAASRYGIPTGTLYGRCKREGIELSRSNPTPWSEDAMGEALEAVRVGQMSINQAAIHYNLPYSSLYGRFKRCKYQVLQDPQTLPENKPEEHSEIQNQEFHYPTLNYDSEYMGEVSSMQSLQEHYSQAMYYAQCNVTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00114860;
- 90% Identity
- iTF_00357344;
- 80% Identity
- -