Basic Information

Gene Symbol
-
Assembly
None
Location
AY:2069661-2150637[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 18 1.2 56 4.2 0.9 1 23 49 72 49 72 0.95
2 18 0.33 16 5.9 4.6 1 23 79 102 79 102 0.96
3 18 0.0016 0.074 13.3 0.6 2 23 207 228 206 228 0.97
4 18 0.16 7.7 6.9 3.4 2 22 493 513 492 513 0.95
5 18 3.2 1.5e+02 2.8 1.0 1 23 611 633 611 633 0.82
6 18 0.2 9.5 6.6 0.6 2 23 768 789 767 789 0.96
7 18 0.0055 0.26 11.6 0.7 2 23 869 890 869 890 0.97
8 18 0.029 1.3 9.3 1.7 1 23 898 920 898 920 0.98
9 18 0.11 5.4 7.4 3.4 1 23 957 979 957 979 0.95
10 18 0.00022 0.011 15.9 4.0 1 23 987 1009 987 1009 0.99
11 18 0.013 0.64 10.3 2.9 1 23 1094 1116 1094 1116 0.99
12 18 0.12 5.6 7.4 2.1 1 23 1173 1195 1173 1195 0.94
13 18 0.0054 0.26 11.6 2.2 1 23 1290 1312 1290 1312 0.95
14 18 0.013 0.63 10.3 1.1 1 23 1318 1340 1318 1340 0.96
15 18 0.0063 0.3 11.4 2.6 1 23 1430 1452 1430 1452 0.97
16 18 0.00016 0.0074 16.4 1.4 1 23 1458 1480 1458 1480 0.99
17 18 0.7 33 4.9 2.1 1 23 1572 1594 1572 1594 0.96
18 18 0.0026 0.12 12.6 3.7 1 23 1605 1627 1605 1627 0.98

Sequence Information

Coding Sequence
ATGCTACAGCAGATGTCCTCGCCGTTCCCGCTCTACGGCGAGGTCGTGCGCACCGAAGACCGTCCCTGCGGCGACGCGTCCTCGGGCGCCTCCTCCGACGCCGCGGACGATTTCGAACTGCCCCACTGCAAGATAAGAAGGAACTACAACTGTACGAAGTGCACGTACTACACGCAGAACCCGCGCGCTTATCTCGTGCACACGCGTGACGTGCACTTCGTCAAATTAAAGATATTCGACTGTCCGCACTGCTTGTACGCGTCGCGGCACCACCAGAAACTCGTCAGGCACGTCAAAATGGTGCACGGCCGCTCTACCTCTAACTGTGCCAAAGTAGAGACGGACACGTCCGCGGCGGTCGACGCCGCCGACCACAATAACAGAATGGAAGACATGTTCGAGGAAATAGAGGATGACGAGGACGGCCAGATGGAACTCGACGACAACTTTGAAGAACAGGAAGACACAACCGAAGATTTAAAAGGAGAGGATGAGAGACTCGAGTCGATTTCGGGGAAAGATAAACGCAACTTTTACTCGTGCGACAAATGTTATTACGTGACGCACATACGCGCTAGGTACACGAAACACGTGAAGTACCACACGATGCCGATGATAAAGTGCACGATATGCGACTTCCAGACACCATACAAATGGAACCTCGACCGTCACATGAAGAACCACGGCGGTAACGGTAGCTTCAGTTGTTTCGTGTGCAACTTTACAGCTGATATACAGCAGAGTATGACGGTTCACGAGATGAATCACCACACGCGACCTCCGGGGGGTCCGCGGCCGGGTCGTCGCCGGAACCGCGTGGGTGCCAGCGAAACGACAGCGCTTGACGTACCGGTGCCGCTTCCCAAGGAGGAGGAAGGGAGCGGCGATTCATCGGATATGGGTTTACAATACGCAGAAAAGGATGTTATTAGCTGTACTAGTGATTCTAACGATGCCACTCCGTCTGAATACAACAATAGCAGAAATCCCTTACTCAATGAAGATTTACGAAGTCAGTCGCCTAACACAAGTACTGACGAAGCTAAATCACAGAAACAAAAGAAGATCCCCAGGCCCTTACCACAGCTTATACCATTGAATTCTTCAACCCCAAACCAAAAAGTAGCCACCGGTGAACCTCCAGTGAAGAAGTTTAAGGAGTCTCCCAATTCAGAAACAATGGATGTAGATTTACAAAATAAGATAGATAGCTTACAAAGTGAAGTGACATTTATACCTTTAAAGAATGGACCATTCAATTTAAAAGATACAATAGTTCGCAAGAAAAATGAATCATTTTTCGACAGACTCAAGGAACGACTATTAACGGAAACCGGTGAAGAAGGAACGTTAATTTGTAAAAATTGCGGCTTCGAAAGCAAATGTTTATCTGAGCATTCAGTACATGAGAAAAATTGTGCTCCGCTACCAAATCGGACCGCATTGAACACACTGCTTCCGAGTACCAGTTCAACACGTTGCCAAAATTGTAGACATAGGTGTAAATCTAGCGCCGATTTATACGTTCACATGCAAACGTGTAAAAGAAGTGGTAAAATTGAAGATGAGACATCTCTAGAAACGAGAAGCCAAAGTAATGAAACTAAAGAGATTCACCTTGAAAAAGAAGTAGAGCCGCATCCGATGGAAAACGTAGTCTTCGTGTGGAACAAAATTCATCATGAACAGGGTAAATTCGATACACCACTAGATATAAGTATACATGACGATTCAACATTACCGGATCAAGCGAGAAGTTACGAATGTGAAACCGTTGATGAAAATGAAAGTATGAACCTATCGCCAAGTCAAGCTGTCGGGAAGAACGTCTTTAAGTGTCCCCATTGCCCATTTTGGGCGTCAACAGCAAGTCGATTTCACGTCCATATTGTCGGTCACTTAAATAAAAAACCATTCGAATGTTCCCTCTGTAAATACAAATCGAATTGGAGGTGGGATATTACAAAGCACATAAAATTAAAATCTGCCAGAGACCCAGAACATAACGATGCCAAAGTTTTAATGACCGATGAGACTGGCAGAAGAAACTACAGCAAATACAGTAAATTCTTAGCAATGCCTGTTGTAAATGAAAACGGTGAAAGCGAATTTCATTATATAGACCCTAATAAAGCAGGAGATACATCAATGGAGGTCGATGAGACTTTTAATGACACCGTAGATGGTTCGAATTCCAATTACGAAATACAGCCACTAAACCTGCAAACTCAACTCGACAATAAATCAGATACAATGGACATTAGAGATCAAGATGGCAAAAAAGTAAAGAAAACATTATGGAAATGCAAGAAATGCAATTACAAAGATTCATCTAAGGAAGCTTTGTTGGAACACGTACGCGAACACGCCAAACTGGATAATGGACTTGAGGATTCAAAGAATCTTAGTAATAAAAAAGTCGAGAGTATATTAGATCCGTCTGACTTGGCTTATCGCTGTGGTCATTGCAATCAACTGTCTAATTGGAAGCATGTCATTCAGCGACACTGCCGTCTGAAGCACGAGGGAATAATAAAAGTTATTACTACTGTCAAACCAAAATTAGACATGGCATCTGCATCAGCGAACGAACTGTCCGGTGAAACATGCACGAAATGCCCCTACAGATCAAGCGATAAAAAGGCCCTCTCGATCCATATCCAACAACATCAACCATCAACAAATTCAATATTCAAATGCTTCTTCTGTCCTTTCTTCGTAAGGGATGAGCATGAACTAATACAACATCTACAAGTCCACGGCGTGAACGATCCAGAGGACTATATATCCAAAGCCGTGAATTGTGGATCGCCTTTACCAGATATGCAATCTTCATCAAATGTAATGCATCCTTGTTCAAATAAACGCCACAAGTGTACGGAATGTCCGTACGAGACCAACAGTAAATCTCAGTATATGTATCATGAACAATTTCATAGATTACCAGCAGACACTCCGTACAAATGTCCCGAATGCAATTACAGTGTATCGAAGAGACATTTGCTCCACCAGCATTTAAGGGTGCACGGTATTCTTCCGAAGAAAACTGAATCTGAAGCAGAATTAGAATCGATGTCAGCGTATCAGAAATCAGAAAATGCAATGGAGCTATCTAATGTCAATATAGACGAAACACCCTACGTTTGGGTTTCGGCGAAAAACGAATTCCATAAAATGTACAAATGCCGATATTGTTCCTATGTTAATTCGCAGAAATGCAAAATACCGAATCATGAGAAGATTCATTTCTACTTATTCGAAAACAGTGAAATAATAGTTTACAAATGTTTAGAATGCAAATTCACATGTGATACTGCAAGTAAATTGGCTGAGCATTCAAAAACCCACGGAGAAATATACGGAAGAATATACTGCCCGGTCGAAGAAGACGTCCCTGATGAGGAGCAAATATCTAAACTACGTAAGGTGATTGAACTTGAGAAATCTAGTAACCCAGATAATATGTCCCCGAGAGACGATGAATTAAAACCTGAGAGTAGAGAATTGAAAACATTACATTTCTGTCAACAGTGTCCAGCGAGGTACTTTACTGAAAGTGAATTAAAGGTACACGAAAAATTCCATGACCTTACATTGTCTATTAAATGTAAGAGCTGTGAATTTTCCGTTCTCGAAGAAGATGAATTGAATTCACATAATATAGTGCATTCAGATGAATACCATACAAAAACTAAAATGCTTAAGTTTATTCACAACGTACACTCAATGTACAAAGAACCTAGACTGGAGTCGGTTCATTGTCCGGAAACCTCAGAGATTACTTGGATAGTGAAGCATACGAAGATGAATGAGATTGTTGAAAGTAGTATTAAAAAAATTAACGACGGAAAACACGCTGCGAAACAATTTTGCTGTAAGGAATGCCCCGCAAAGTTCTTTAAGAGTTCTGCCCTCAATTATCACATGGTATTACATGGAGGAGAGGGCGACCATAAATGCAAAAAGTGTAGTTACGCGGTTAAAAATATCGGGAATCTAGCAAAACATGAACTGTTACACGAGAATGAGCATAAACAGGGCAATTGTGATTACGAATCTAACGATGATGTCGATTATAAAAATATCCCATTGTCGGGGACGGATTTATTTCAAAGGAAAACCGAAGCCCAAAAGAGAGTTTTCATAGATAAAGATAAATTAGTCAAACCAAATGACCACTTCCCGCCCGTTCTCCAAGCGGATCCACAGTTCGGTTACTTGATGCACGGAAATCCTGAGTTCATATACCCGACGTACTTAAAAAACGGACGACAGAAAGAGAAACGTTATAAATGCCACAAATGTCCATCAGCGTTTGAGAAAAGGGAGCAATACAAAATTCATTTGTCACTACACGGATCAAAACAAAGGTACAAGTGTGAACTTTGCGATTATTCGGTGAAATATTACGCGAACTACGTCCAGCACATGAGGAAACACCAGATGAATGATGAGGCACAAGCTGAACGGAGAAAGAGTAATAGCGGATTAATGGAAACCGAATGCCAGGAGGACGTACAATGTGACGAAAGCCGTGCTACTATTAAGCTCGCTATAAAAACAATGCCAAAGGGAGTCCCTAAGAGCGATTTCCAACAGTTTTCGTTAAGGGACCAACAAACACTGAGGTTGTTGCAACGGAGACGATCAATGGCGAATACGGGGACGGATTTAAACACCGCAGAAACATCACCGACAAAGGAAAGGAAGTTACACATGTGCTTACTATGCCCATATACGAACCAACGGCAGGACGCACTAAATAACCATTATAAAAGGCATGACGATACCGATATTCTTAACTCTGGAAGCCACAAGTGTTCCTACTGCGATCTAGTTGTAGTCCAATCTCATTTCCTGAGAGAGCATTTGAAGACGCATTTCAACCAACACAAAACACATTTGCCTGAATGTTTCGTCGCGAATCAAGAAGTTAGTTTCAAGTTAAAAAATTTAGACGATGAAACGAAATGCACCGATCTCAAATTAGACTTTTTAAATACGAACAAGTGCAATGATGATAAGATTTATGTTAAAATTAAAACGGGAGAATTGTTTGTAGAATAA
Protein Sequence
MLQQMSSPFPLYGEVVRTEDRPCGDASSGASSDAADDFELPHCKIRRNYNCTKCTYYTQNPRAYLVHTRDVHFVKLKIFDCPHCLYASRHHQKLVRHVKMVHGRSTSNCAKVETDTSAAVDAADHNNRMEDMFEEIEDDEDGQMELDDNFEEQEDTTEDLKGEDERLESISGKDKRNFYSCDKCYYVTHIRARYTKHVKYHTMPMIKCTICDFQTPYKWNLDRHMKNHGGNGSFSCFVCNFTADIQQSMTVHEMNHHTRPPGGPRPGRRRNRVGASETTALDVPVPLPKEEEGSGDSSDMGLQYAEKDVISCTSDSNDATPSEYNNSRNPLLNEDLRSQSPNTSTDEAKSQKQKKIPRPLPQLIPLNSSTPNQKVATGEPPVKKFKESPNSETMDVDLQNKIDSLQSEVTFIPLKNGPFNLKDTIVRKKNESFFDRLKERLLTETGEEGTLICKNCGFESKCLSEHSVHEKNCAPLPNRTALNTLLPSTSSTRCQNCRHRCKSSADLYVHMQTCKRSGKIEDETSLETRSQSNETKEIHLEKEVEPHPMENVVFVWNKIHHEQGKFDTPLDISIHDDSTLPDQARSYECETVDENESMNLSPSQAVGKNVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNDAKVLMTDETGRRNYSKYSKFLAMPVVNENGESEFHYIDPNKAGDTSMEVDETFNDTVDGSNSNYEIQPLNLQTQLDNKSDTMDIRDQDGKKVKKTLWKCKKCNYKDSSKEALLEHVREHAKLDNGLEDSKNLSNKKVESILDPSDLAYRCGHCNQLSNWKHVIQRHCRLKHEGIIKVITTVKPKLDMASASANELSGETCTKCPYRSSDKKALSIHIQQHQPSTNSIFKCFFCPFFVRDEHELIQHLQVHGVNDPEDYISKAVNCGSPLPDMQSSSNVMHPCSNKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGILPKKTESEAELESMSAYQKSENAMELSNVNIDETPYVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHFYLFENSEIIVYKCLECKFTCDTASKLAEHSKTHGEIYGRIYCPVEEDVPDEEQISKLRKVIELEKSSNPDNMSPRDDELKPESRELKTLHFCQQCPARYFTESELKVHEKFHDLTLSIKCKSCEFSVLEEDELNSHNIVHSDEYHTKTKMLKFIHNVHSMYKEPRLESVHCPETSEITWIVKHTKMNEIVESSIKKINDGKHAAKQFCCKECPAKFFKSSALNYHMVLHGGEGDHKCKKCSYAVKNIGNLAKHELLHENEHKQGNCDYESNDDVDYKNIPLSGTDLFQRKTEAQKRVFIDKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERRKSNSGLMETECQEDVQCDESRATIKLAIKTMPKGVPKSDFQQFSLRDQQTLRLLQRRRSMANTGTDLNTAETSPTKERKLHMCLLCPYTNQRQDALNNHYKRHDDTDILNSGSHKCSYCDLVVVQSHFLREHLKTHFNQHKTHLPECFVANQEVSFKLKNLDDETKCTDLKLDFLNTNKCNDDKIYVKIKTGELFVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2