Basic Information

Insect: Samia ricini
Gene Symbol: -
Assembly: None
Location: BLXV01000001:13913459-13921562[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.099 6.5 7.6 0.4 2 23 5 26 4 26 0.93

2 18 7.8 5.1e+02 1.6 1.5 1 23 32 54 32 55 0.93

3 18 0.17 11 6.9 3.4 2 22 292 312 291 312 0.95

4 18 2.8 1.8e+02 3.0 1.0 1 23 410 432 410 432 0.82

5 18 0.17 11 6.8 0.6 2 23 567 588 566 588 0.96

6 18 0.00055 0.036 14.7 0.5 3 23 669 689 668 689 0.97

7 18 0.024 1.6 9.5 2.3 1 23 697 719 697 719 0.98

8 18 0.1 6.6 7.6 3.4 1 23 756 778 756 778 0.95

9 18 0.0002 0.013 16.1 4.0 1 23 786 808 786 808 0.99

10 18 0.011 0.75 10.6 2.8 1 23 892 914 892 914 0.99

11 18 0.11 6.9 7.5 2.1 1 23 971 993 971 993 0.94

12 18 2.8 1.8e+02 3.0 0.4 2 23 1000 1021 999 1021 0.90

13 18 0.0018 0.12 13.1 0.7 1 23 1088 1110 1088 1110 0.97

14 18 0.0084 0.55 11.0 1.8 1 23 1116 1138 1116 1138 0.96

15 18 0.0055 0.36 11.6 2.6 1 23 1228 1250 1228 1250 0.97

16 18 0.00014 0.009 16.6 1.4 1 23 1256 1278 1256 1278 0.99

17 18 0.61 40 5.1 2.1 1 23 1370 1392 1370 1392 0.96

18 18 0.0023 0.15 12.8 3.7 1 23 1403 1425 1403 1425 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.099	6.5	7.6	0.4	2	23	5	26	4	26	0.93
2	18	7.8	5.1e+02	1.6	1.5	1	23	32	54	32	55	0.93
3	18	0.17	11	6.9	3.4	2	22	292	312	291	312	0.95
4	18	2.8	1.8e+02	3.0	1.0	1	23	410	432	410	432	0.82
5	18	0.17	11	6.8	0.6	2	23	567	588	566	588	0.96
6	18	0.00055	0.036	14.7	0.5	3	23	669	689	668	689	0.97
7	18	0.024	1.6	9.5	2.3	1	23	697	719	697	719	0.98
8	18	0.1	6.6	7.6	3.4	1	23	756	778	756	778	0.95
9	18	0.0002	0.013	16.1	4.0	1	23	786	808	786	808	0.99
10	18	0.011	0.75	10.6	2.8	1	23	892	914	892	914	0.99
11	18	0.11	6.9	7.5	2.1	1	23	971	993	971	993	0.94
12	18	2.8	1.8e+02	3.0	0.4	2	23	1000	1021	999	1021	0.90
13	18	0.0018	0.12	13.1	0.7	1	23	1088	1110	1088	1110	0.97
14	18	0.0084	0.55	11.0	1.8	1	23	1116	1138	1116	1138	0.96
15	18	0.0055	0.36	11.6	2.6	1	23	1228	1250	1228	1250	0.97
16	18	0.00014	0.009	16.6	1.4	1	23	1256	1278	1256	1278	0.99
17	18	0.61	40	5.1	2.1	1	23	1370	1392	1370	1392	0.96
18	18	0.0023	0.15	12.8	3.7	1	23	1403	1425	1403	1425	0.98

Sequence Information

Coding Sequence: atgccgatgataaagtgcatcatatgcgacttccagacgccatacaagtggaacctcgaccgtcacatgaagaatcacggcggaagcgggagcttcacctgcttcgtatgcaacttcaccgctgacttacagcagagtatgacggtacacgaaatgaatcaccatacgcggcctccgggaggtccgcggccgggtcgccgccgcaaccgcgtgggtgccgccacacaagcggccctcgctgacgtgccgctgtcgcttcccaaggatgaggaagggagcggcgattcctcggatatgggtttacaatacgcagagaaggatattgtcagttgtaatagtgattctaatgatgtcaccgcctccgaagctaataacgggataaacccctttttcaatgaagatgtaagaagtcaatcgcctaatacaagcactgacgaatctaaatcacataaacaaaaaaagactcctagacccttacctcaactcataccactgaattcgtcaacaccaaaccaaaagttacccaccggcgaacctccagtaaagaaatttaaagaatcttcaaattcagaaacaatagatttaaacttagaaaataagatggataatttacatagtgaagtctcatttatacctctaagcaatggaccattaaatgtaaaagatacaatagttcgtaagaaaaatgagtcatttttcgataggctcaaagaacgattattaacagaaaccggcgaagatggatcattagtttgtaaaaattgcggtttcgaaagcaaatgtttatctgaacattccgtacacgagaaaaactgcgttccattaacaaatcggaccgcattaaacacactgcttccaagttcgagctcaacacgttgccaaaactgtagacatagatgtaaatctagtgccgatttatatattcatatgcaaacgtgtagaaggagtgggaaaattgaagacgaagcatcaatggacacaaatatgcaaacaaatgaaaacataaaaaataaactcgacaaagaggcggagccacacccaatggaaaacgtagttttcgtgtggaacaacattcaccaagaacagggaaaattcgatacaccactagatataagtataaatgatgattcaactctgccagatcaggcgagaaattatgaatgtgaaaccgttgatgaaaatgatagtatgaacctatcgccaagtcaggccgtcgggaaaaatgtttttaaatgtccccattgcccattttgggcatcaacagcaagtcgatttcacgtccacatcgttggtcatttaaataagaaaccattcgaatgttctctttgtaaatacaaatcaaactggaggtgggatatcacaaagcacatcaaactaaaatctgctagagaccctgagcacaacgaagccaaagttttaatgactgatgagactggtagaagaaactatagcaagtatagtaaattcttagctatgccagtggtaaatgaaaacggcgaaagtgaatttcattatatagaccctaatagagcagttgatgactcaatggatgtcgacgagaccctaaatgatgctattgatgttacaaactcaaattacgaaatgcagccattaaaccttcaaactcaaatagaaaataaatcagatataatggactatagggatcaagatggcaaaaagataaagaagacattatggaagtgcaaaaaatgcaattacaaagattcgtcaaaggaagccttgttagaacatgtccgagagcacgccagacttgataatggttatgaagatcctaaaaatctcagtaataagaaacctgaaaacgtgttagatcccgctgacttggcttatcgttgcggccattgcaatcaactatctaattggaagcatgtcattcagcgacactgtcgtctgaagcacgaagggattataaaagtcatcactactgtcaaaccaaaactagatacggtgtctccatcaacgaatgaaacgcttggtgaaatatgtccgaaatgtccgtatcgaacaagcgacaagaaggccctttcgacgcatatgcaacaacatcagccctcaacgaattcaatattcaaatgtttcttctgtcccttcttcgttaagaatgaacacgatctaatacagcatctacaagtccacggtgtgaacgatccagaggattatatatccaaagccgttaactgtgaatcgccattaccagaaatacaatcctcattaaatctgatccacccatgttcaactaaacgtcacaagtgtacggaatgcccatacgaaaccaatagtaaatctcaatacatgtaccatgaacaatttcatagactcccagcagacacaccgtacaaatgtcccgaatgtaactacagtgtatcgaagagacatttactgcatcagcatctgagagtgcacggcatacttcctaaaaaatgtgaatcagaagcagagttagaattgacaccgtaccaaaaatctgaaaacgcatccgaactatctaacgttaatcttaatgaaaccccttacgtttgggtttcggcgaaaaatgaattccataaaatgtacaaatgccgttattgttcctatgtgaattcgcagaaatgcaaaatacccaaccacgaaaagattcatttttgtttgtttgaaaacagcgaaataataatttataaatgtttggaatgcaaattcacttgtgacaacgccagtaagttggcagaacattccaaaactcacggagaaatatacgggagaatatactgtccggtcgaagaagatattcccgatgaagaacaaatatctaagctacgtaaagtgattgaactggaaaaatcaagtaacactgacaatatgtcaccgagagacgatgaagcgaaacctgagagtagagaactgaaaacattacatttctgtcagaaatgtccggcgagatactttactgagagtgaattaaacatacatgaaaaattccactatctcacattgtcaaataaatgtaagaagtgtcaattttccgtttccgaagaagatgaaatgaatttacataatgtggtgcattctgatgaatatcatacaaaaactaaaatgcttaaatttattcacaacgtacacacaatgtacagggaacccagactggagtcaattcttgatcaggaaacgtcagaggttacgtggatagctaaacctatgaaaacctatgaaaatgttgaaactcctataaaaaaagtaagcgagggaaaacatgttgcgaaacaatattattgtaaggagtgccccgcaaagttcttcaagacttctgctctcaattatcacatggctttacatggaggagaaggtgaccataagtgcaaaaaatgtagttacacagttaaaaatatcgggaatctagcaaaacatgaattattacatgaaaatgaacacaaacagaacaactgtgattatgaatcgaacgaagatgttgattataaaaatgttccactgtccggaacagatctatttcaaagaaaaaccgaggctcagaagagagttttcactgaaaaggataaattagttaaaccaaatgaccactttccgccagtactccaagcggaccctcagtttggttacttaatgcacggcaatcctgaatttatttacccgacatacctaaaaaatggtcgacaaaaagaaaaacgctacaaatgccataaatgtccgtctgcgtttgagaaacgagaacaatacaagattcatttatcattgcatggatcaaaacaaagatacaaatgcgaactttgtgattattccgtaaaatattacgcaaactacgtccagcatatgaggaaacaccagatgaacgacgaggcccaagctgaacgtaagaaaagtaatagtgggttaacggagacagattgccaagaggatgttaaacacgaagatggtaaagatcatataaaactcgctataaaaactatgcccaaaggtatcccgaagagtgatttccaacaattttcgttaagagaccaacaaacattgaggttgttgcaacggagacggtcgatggtaaatgctggagcggatgtgaatgccacagaaacatcaccgacgaaggaacggaagctacacatgtgcttgttatgcccgtacacgaatcaacggcaagacgcactgaataatcattataaaagacatgacgatactgacatccttaattctggaagtcataagtgctcctattgcgatctagtcgtggtccaatctcattttctaagggaacacttgaaaacgcattttaatcaacataaaacacatgtccctgaatgtttcgttgctaataaagatgttagttttacattaaaaaatttagacgatgaaacaaaatgcacagatctcaaattagattttttaaatccaaacaacaagtgcaacgaggataagatatttgttaaaattaaaacaggagaattgttagtagaataa
Protein Sequence: MPMIKCIICDFQTPYKWNLDRHMKNHGGSGSFTCFVCNFTADLQQSMTVHEMNHHTRPPGGPRPGRRRNRVGAATQAALADVPLSLPKDEEGSGDSSDMGLQYAEKDIVSCNSDSNDVTASEANNGINPFFNEDVRSQSPNTSTDESKSHKQKKTPRPLPQLIPLNSSTPNQKLPTGEPPVKKFKESSNSETIDLNLENKMDNLHSEVSFIPLSNGPLNVKDTIVRKKNESFFDRLKERLLTETGEDGSLVCKNCGFESKCLSEHSVHEKNCVPLTNRTALNTLLPSSSSTRCQNCRHRCKSSADLYIHMQTCRRSGKIEDEASMDTNMQTNENIKNKLDKEAEPHPMENVVFVWNNIHQEQGKFDTPLDISINDDSTLPDQARNYECETVDENDSMNLSPSQAVGKNVFKCPHCPFWASTASRFHVHIVGHLNKKPFECSLCKYKSNWRWDITKHIKLKSARDPEHNEAKVLMTDETGRRNYSKYSKFLAMPVVNENGESEFHYIDPNRAVDDSMDVDETLNDAIDVTNSNYEMQPLNLQTQIENKSDIMDYRDQDGKKIKKTLWKCKKCNYKDSSKEALLEHVREHARLDNGYEDPKNLSNKKPENVLDPADLAYRCGHCNQLSNWKHVIQRHCRLKHEGIIKVITTVKPKLDTVSPSTNETLGEICPKCPYRTSDKKALSTHMQQHQPSTNSIFKCFFCPFFVKNEHDLIQHLQVHGVNDPEDYISKAVNCESPLPEIQSSLNLIHPCSTKRHKCTECPYETNSKSQYMYHEQFHRLPADTPYKCPECNYSVSKRHLLHQHLRVHGILPKKCESEAELELTPYQKSENASELSNVNLNETPYVWVSAKNEFHKMYKCRYCSYVNSQKCKIPNHEKIHFCLFENSEIIIYKCLECKFTCDNASKLAEHSKTHGEIYGRIYCPVEEDIPDEEQISKLRKVIELEKSSNTDNMSPRDDEAKPESRELKTLHFCQKCPARYFTESELNIHEKFHYLTLSNKCKKCQFSVSEEDEMNLHNVVHSDEYHTKTKMLKFIHNVHTMYREPRLESILDQETSEVTWIAKPMKTYENVETPIKKVSEGKHVAKQYYCKECPAKFFKTSALNYHMALHGGEGDHKCKKCSYTVKNIGNLAKHELLHENEHKQNNCDYESNEDVDYKNVPLSGTDLFQRKTEAQKRVFTEKDKLVKPNDHFPPVLQADPQFGYLMHGNPEFIYPTYLKNGRQKEKRYKCHKCPSAFEKREQYKIHLSLHGSKQRYKCELCDYSVKYYANYVQHMRKHQMNDEAQAERKKSNSGLTETDCQEDVKHEDGKDHIKLAIKTMPKGIPKSDFQQFSLRDQQTLRLLQRRRSMVNAGADVNATETSPTKERKLHMCLLCPYTNQRQDALNNHYKRHDDTDILNSGSHKCSYCDLVVVQSHFLREHLKTHFNQHKTHVPECFVANKDVSFTLKNLDDETKCTDLKLDFLNPNNKCNEDKIFVKIKTGELLVE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00114559;
90% Identity: -
80% Identity: -