Basic Information

Gene Symbol
Zfa
Assembly
GCA_945859655.1
Location
CAMAOM010000474.1:476128-484617[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 22 0.01 1.2 10.8 1.6 3 23 717 738 716 738 0.96
2 22 0.22 27 6.6 0.3 1 22 1122 1143 1122 1143 0.95
3 22 0.1 12 7.7 4.8 2 22 1218 1238 1217 1238 0.93
4 22 2.6 3.1e+02 3.3 0.0 3 23 1247 1268 1245 1268 0.89
5 22 0.019 2.2 10.0 0.2 3 23 1287 1308 1285 1308 0.96
6 22 0.002 0.23 13.1 1.7 1 23 1314 1337 1314 1337 0.95
7 22 0.13 16 7.3 0.0 1 23 1363 1386 1363 1386 0.90
8 22 0.02 2.4 9.9 3.4 1 23 1391 1413 1391 1413 0.97
9 22 0.0093 1.1 11.0 0.2 1 23 1419 1442 1419 1442 0.95
10 22 0.0043 0.51 12.0 0.8 1 23 1455 1477 1455 1477 0.97
11 22 0.00019 0.023 16.3 1.8 1 23 1527 1550 1527 1550 0.97
12 22 0.00053 0.063 14.9 1.6 1 23 1608 1631 1608 1631 0.95
13 22 0.0025 0.3 12.7 2.1 2 23 1658 1680 1657 1680 0.95
14 22 0.042 5 8.9 0.1 2 23 1686 1708 1685 1708 0.94
15 22 0.011 1.3 10.8 0.2 1 21 1752 1772 1752 1773 0.95
16 22 0.00045 0.054 15.1 1.0 1 23 1784 1806 1784 1806 0.93
17 22 0.00012 0.014 16.9 0.3 2 23 1899 1921 1899 1921 0.93
18 22 4.2e-07 5e-05 24.6 1.4 3 23 1928 1948 1927 1948 0.98
19 22 0.024 2.8 9.7 0.3 1 23 1966 1988 1966 1989 0.95
20 22 0.13 15 7.4 0.0 1 23 2012 2034 2012 2034 0.97
21 22 0.03 3.5 9.4 0.6 1 23 2040 2063 2040 2063 0.95
22 22 0.00027 0.033 15.8 0.4 1 23 2071 2094 2071 2094 0.96

Sequence Information

Coding Sequence
ATGAATGTGAACTATGATCGTGTTTGTAGACTGTGCTTGTCATCTCGAGGCGAATTACTGCCGATTTTTCCTACCACCAGTTCGGATGACTCGGAACCTCCCGTCCTCGCTTTGAAAATCAAGGATTGTGTGTCCGTACAGATAAACGAAAATGACGACCTGCCCACCAATGTCTGCAGGAAATGCATGGACAATGTCAATAACTGGCATGTTTTTAAAAATGTGTGTGAAAGGACACAAAACAAACTACAGTCTCTGAAAGATGGCAGCCAACTAGAAGAGGTGAAAATAAAAAGTGAACCACTGTCTGATGAGGCTTATGATGATGGAGTGGCCATTGATGGCTCATATCCTGTCATTGAGAATGCTGGCTTTTCAAACAAAGTACAACCTGAAGGTCCCCCAATCTTGGCTTCACTGGGGCTCACACCAAGAAGTGATAAGAAATGTGTGGATCCACGAATGGATTGGCATCGGGTCCATGCTATTTTGGACATGGTTCAAGACAATGAGGTGATTGACTCTCTGCAGACTAAGGAGGAGTGTGATGTCTTGCAGCGATCTGATCATGACTCTGACTCAGAAGCTGAACTCAAACCTGAGATCGATGATGATTATGTTGATTGCAAAAGCGGTTACATATGCAAAAATAAAAAAGTAATATCAAAAGCTCCAAAACTCTCAACTTCTGTAAACAATGCCAGAATGAAAGAAGCTTTCAAACTCAGGAAACGTAAATTAGAAGTCCGTAAACATTGTTCTCGACCTAAAAATGCGTGGCAATTGTTATTCACCGATGACCTACTAGAATTGATTGTTGCTTCAACTAATGACAATATTGTGACAAATGGGAAAAGTTTCTCAGAGTCAACTAGTGTCAGCGAAATTAAAGTGCTTATCGGTATTCTGTATCTGCACGGCATAATGCGACCGACACATCAGAAATGTACTGACCTTTGGAACAGCGAATGTGGCGTTCCTTGCGTCAGAAAGGTCATGAAATACGAAAGGTTCAAATTCTTGCTTCAAAACATGAGCTTCGATAAAGAGGACGACGACAGCATTATTCAGTTCGACATAATGAAGCGTATGCGCAAAGTATTCGAAATCTTCGCCATGAATTGCAGAACATCTCAAGAGATCGAGAATGTCGCGGTTATTGATGAGATCATCGTGCCAGTTTACGGACCTTGCCCATTTCGATACGATATTGATAAGAAGCCGCTGAAGCGGGGCATAAAAATGGTATTGCTAGTTGATTCATCCACATTCTACATGAGCAATTTAGATGTCATTACTGATCCTTATTTTGGTGCCGAAGAGATAGCGAAAAAGTTGGTTCAGCATTTAGCTGGAACTGGCAGATCTATTGTTATGGACAGTTGGTTTACATCTTCCTCGTTGATGGATAGCCTTAAAAATGAGTACCAGTTGTATTCTATTGCAGCCGTGCACCCAAATAGTGATATGATTCCTCCTCTATTCCTTTCTCAATACAGGAAAACTCGAACATTCATGTCTGGATTTATTGATGATGAAGTATCATTGACATCTTATGTCAATGCTGAGGGAAAATCAGTAAATGTGTTGACTAATGAGCCAAGATATTACAGGAAAGGTCATATAAATCACACCACAGTTGTATCGGTGTATAAGAAGACGCAGTCTGCTGTAGAAGTCGTTGATGTTCTCATGAATTACTACACCACAATGCAACACACAAATGATTGGACATTGACTTTATTCTTCACATTGCTGAATATTGCCTCTGTGAATGCTCAAGTACTGTGGTGCTCTCAGAACTCGAATGTTGCACAGCGTCGTTTATTTATCAAAGATTTAGCTTTAGACTTACTTGAACCAGAGGAAGAAAGAATTTTAATATCTCCAATAAAAGATTTAGAAGAGAAGAAAAACAAATTCTCTCTGGAACGCAATACTTCGCAACCTTATTACAAGAACAGAAGAAGGTGTAAAATTTGTGGTGCGGAGAGCGAAAATAATGAAGAAGACGAGGAAGAAACTAATGAGCCCGCACAAAATTTCCCGAAAATGCCAAACATGCCCGAGGTATCCATCACGGTCATGAGGACTACCGGTGAAACACTTCATGCTCGCCAAGGTATTCACCAACTCGCCTCAAAACTGTGCCTCGTCTGCGGTCGCTCCTACAGGTACTCTCACAATGCACGCAGACATGAACTTACTTCTCACGGCTTCGACAGATATACCAACAAAATTACTCCTAAAAAAACTCTCAATCATCTACAACCTAAACTCAGACCGAACCCATTCAACCCGAAAGCAAGGATGATGCCAAATCCTATTAGTCATAAGATGCAGTTCTTGAACAAGAAAATGCCAACTAAAATAATGCCCATGAATAAAGTAATAACGCCACAGAGACCCATTCCAATAAAGACAACGTCAAAGACACAAAATAATTTGCCTTATCCTCTACGCATTAAAGCACTCAAAGATTTACAAATTAAGAAAAAGGAGCCTCAGATTCTCAAGACATTGTTAACATCTAAACCTGAAGTTCTGGTTTCAGAACCAGAAATTCTAAATTCTGGGCCTGAAAGTCCAGAAACATTGATATCTGAGCCTGAAATAGCGTCTTTTCAAGTCGAAGCTATTCTTACGGAACCCGACGCCGATGCGTACGATGATCCTCAGCAAGGTGACGAAGAAGTTGACGAAGAAATGCAAAACAATCAAAGTCAAAACTATGACACAGTCGATATGGACTCTGACAATGAAATAGAAATTGCTCGTCAGCAAAGCATTGAACAAGAAGGTGAAGAAAATGCTGAAGGGGAAGAGAATATCGACCATGATGACGATAACAATGAAGCCGGTCAGAGCGATAATGAGAAAGATGGTAATGACGATACAGCTGAAGGTCAGGAGAACATGGAAGAAGAAGATAGTGTTGATATTAAACCTGAAGACCATATAAAAGACGACGAGGATCAAGAGGATGGAGAACATGAAGAAGTAGAGATGAATCATAATGAGGACGATGAAGACGATGATGAGCTACCAATAACATTAGCACCAGTTGTTGAGATAAATGAGGGATTGCAATCCAACTCGTTTAACAGCCAAGCTAATGAAGAAGACGAGGAACTTGACGAAACTGTCGATCCTAATGAAACCGTCGATGATGCGGAGTTGCAGGTTAAAGAACTTGACCCAGACAAAACATATGTTACAAAAACCCAAAGAGACTTCATTTCAAAATATCGCGACATCATTCAGCAAATCAACACGAAGCGATGTTTATGTTGCGATCGCGAACATCCGCGCCGAAAAGCTGTCATACAACACTTGCAGAAAAACGGACACAAAGTGCCAAAGCACACTTGTTACAATTGTGTCATCACGTTCGGACATATTGGCGCACTACTCAGTCATATGAGGTCCAATTCTTGCACAAATTTGTGGAAGATTATTTACAATGAAAATGGCATTACCGACGACTTGGTTCTCGAAGATGAGCCGAAAGAGGTCAAGGTTGCTTACAAAGATATTTTCAATGCTAGGTCATACGCTTGCAAGCTCTGCCCAGCCAAATTCCAACTGAAACAGTTTATCATGAAGCATGTAGCGGATACGCATGAAGATGGACAGTCTAGGGTTCCGCTCTGTTGTGTCCACTGCCGTTCCAGGTTCAAGGAGAAGAGTTTACTCAAGAAACACATTCGTAAAGGCGATTGTACCGTTTATATTGCTTGTGATCTGTGCCCGGACACATTTAGAAACATGCAAGACTTTAACGACCATGCTTTAGCCATCCACGCTGGCAGTTTCGATGATAATCAGAGCAAATGTGTTGATGGTCGGCCAACAGACTGTCCGCTGTGCGGAAAGAAAAACAGCAGTTATCCGAATTTAGTGAAACATTTGAAGATTATACATGCTGAGGAGAAACCTCACTACTGTCAGCATTGTGACGCTAAATACGAACAAGCTGCTGATCTGAACAAACACATTTATATGGAGCATTCTGACAGAACTTTAGGCATGCCACCCGCAGAGCCAGATATGTCCATAGTGAAGGAAGAAGCAGAGGAGTATCATTATTCCTGTACGGAATGTAATGCTATATTCGAAACTGTTGATGCGTGGACTGATCACCAAGTTGCCGAACATAACCAAGTGGCCCACCACTGCGACCAGTGTGAGAAGAAGTTCCTGCGTCCTTCAGAGCTGGCCGAGCACAAGAACACGCACTTGAGGGTTAAGTTCTATCCTTGCAGCGTATGTCCCAACTCTTATAGTACTCCACAGAAACTGTCTGAGCATGTGCAACAGTCACATCCAGGAATTGGTGCAGTCGCGGCAGCTGAATCAGAATTCTTCTGTGACATCTGCATCAGAGCATTCAAAAGTCGCCAAGCGTACTCGAATCATATGCGTATTCACGCTAAAGTACCTACTACTAACAGGAAACCAGCTATAGTTAAAGAAGGCTTTGCGCCTCAAATTATCGGCAAACCCATCAAACAATATCCAATGGTTCAACCTGGTTTTGTATCATTTAAACCTAATTACAACATCCCTAACGCTCCATACTCTTGTGACATTTGTGGTAAAGGATTCATGCACAAGAAGAATATATGGAAACACAAGAAAGTGTTGCATGCCGATATTTTAGTTGATAGACATGACAGTGAAGAGAACACCATGCAAGCATCCACTGAAGAAGAGGAATTTAACCCTGATGAGAACGGTGCCATCCTCTCTACGCCACAATTTAATAGTTTCAACTTTGCGAACTTGAACAATGCTCAACAAACGCCTCCAGAAATTTCTCATGAATGTGAATTATGTGGCAAACGGTTCCCGCTTAGGACCAGTTTGTGGAAACACAAGCGTGCTAAACACGGAATTGTGAACCCCAGCACTAGCGGTAGCAACGAGGTATCCCAGCCATCAGCCAGCGGGGAAGGCAGTAGTAGATCTAGCTGCACTATATGTAGAATCACATTTTCGGATAAGAAATCTTATTATCGCCATCGAAAGAATGTCCATAAATCTACCGTTCAAATGTGCAAAATATGTGGCAAACCGTTAAGTTCGACTTTGGAGCTATACGAGCACTTGAAAGCCGCTCATGCAAGGGAGTTACTGGGTTACAACGCCAACCAAGGCTCCAGTAAATCACAAGATGTGTCACAAGACATGGAACCTGATTATGAAAATGATCAAGAGTCTGTCGACCCAAGCGTCGATTATCAAGCGCGCTACCCGTGCGATACTTGTGGCAAACAATTTGTTGGTCTGCTAGCGTTGCAGAACCACCAGTGCATCAATCAGGTGGCATCACAACAACCACAGACGTTTGACTGCGAGATTTGTCACAAGAGCTATACTTCAATATCTGCATTAAAAAGCCATCGTGGATGGCATTTACGTTCGCCCGATGGGAAGGCAGCCGCCAATAACTCTGGCCTTTGGATGCCTCAGCACAAAGTTACTAGCAAGATAAGTAAACACGAAGTTATCGACCCGTCTCAACTTGCGAAGGTCACACATACTCCCACTCCCCCTCCTGTCACTGCCTCCGTTGCAAAACGAAGACTGCCACCAGAGGTCGAAGTGACAGTAGTAAATCCAAACAAGAAATTACGCTCAGACGACTCGGTCGACATGGATATGCAAAATTCTGGTTCAATGGAGGATCGGTATTGCACGATTTGCGATAAGGAATTTACAAAACGAGCGGCTTATCAGCGCCACATGGACGAAGTGCACCAACCGAACTCTGTGTTTTGTCCGGTCTGTGATAAGAGCTTTACAAGGAAGTCCACACTGCTCATTCACATGAAGAAACACTACGAGAGTGGTGAGGGCAGTTCCTCTGCTACAGGTCAAGGGGACGATGATTATTCTTGTGATTTGTGTGGTGCTCAGTATGATAATGATCAGGCGTTGAGGGCGCACCGAGCGCGACACCATGGAGAAGACGAAGAGTCGGCAGAAGAGAGTGATGACGGAAATGTCCCTATAGCTCCTCCCGGCGAATTTACATGCGGGCAATGTGGCGATGGCGTAGCTACTCCCAGGGATCTCATCGCCCACCGCACAATGCACGCTACTCCCACCAAATTCTTCTGTAACATTTGCAAAGTGTACTTCGCTCGTGCGCTCGACCTCTCGTCGCACACTCGAGCGCGACACGCTGACAACGAAAAGGTATTCTTCCCGTGTGCCATGTGCGACAGGTTTTACATGAACAAGAAGAGTTTACAGCGGCACATCGAGATGGCTCACTGA
Protein Sequence
MNVNYDRVCRLCLSSRGELLPIFPTTSSDDSEPPVLALKIKDCVSVQINENDDLPTNVCRKCMDNVNNWHVFKNVCERTQNKLQSLKDGSQLEEVKIKSEPLSDEAYDDGVAIDGSYPVIENAGFSNKVQPEGPPILASLGLTPRSDKKCVDPRMDWHRVHAILDMVQDNEVIDSLQTKEECDVLQRSDHDSDSEAELKPEIDDDYVDCKSGYICKNKKVISKAPKLSTSVNNARMKEAFKLRKRKLEVRKHCSRPKNAWQLLFTDDLLELIVASTNDNIVTNGKSFSESTSVSEIKVLIGILYLHGIMRPTHQKCTDLWNSECGVPCVRKVMKYERFKFLLQNMSFDKEDDDSIIQFDIMKRMRKVFEIFAMNCRTSQEIENVAVIDEIIVPVYGPCPFRYDIDKKPLKRGIKMVLLVDSSTFYMSNLDVITDPYFGAEEIAKKLVQHLAGTGRSIVMDSWFTSSSLMDSLKNEYQLYSIAAVHPNSDMIPPLFLSQYRKTRTFMSGFIDDEVSLTSYVNAEGKSVNVLTNEPRYYRKGHINHTTVVSVYKKTQSAVEVVDVLMNYYTTMQHTNDWTLTLFFTLLNIASVNAQVLWCSQNSNVAQRRLFIKDLALDLLEPEEERILISPIKDLEEKKNKFSLERNTSQPYYKNRRRCKICGAESENNEEDEEETNEPAQNFPKMPNMPEVSITVMRTTGETLHARQGIHQLASKLCLVCGRSYRYSHNARRHELTSHGFDRYTNKITPKKTLNHLQPKLRPNPFNPKARMMPNPISHKMQFLNKKMPTKIMPMNKVITPQRPIPIKTTSKTQNNLPYPLRIKALKDLQIKKKEPQILKTLLTSKPEVLVSEPEILNSGPESPETLISEPEIASFQVEAILTEPDADAYDDPQQGDEEVDEEMQNNQSQNYDTVDMDSDNEIEIARQQSIEQEGEENAEGEENIDHDDDNNEAGQSDNEKDGNDDTAEGQENMEEEDSVDIKPEDHIKDDEDQEDGEHEEVEMNHNEDDEDDDELPITLAPVVEINEGLQSNSFNSQANEEDEELDETVDPNETVDDAELQVKELDPDKTYVTKTQRDFISKYRDIIQQINTKRCLCCDREHPRRKAVIQHLQKNGHKVPKHTCYNCVITFGHIGALLSHMRSNSCTNLWKIIYNENGITDDLVLEDEPKEVKVAYKDIFNARSYACKLCPAKFQLKQFIMKHVADTHEDGQSRVPLCCVHCRSRFKEKSLLKKHIRKGDCTVYIACDLCPDTFRNMQDFNDHALAIHAGSFDDNQSKCVDGRPTDCPLCGKKNSSYPNLVKHLKIIHAEEKPHYCQHCDAKYEQAADLNKHIYMEHSDRTLGMPPAEPDMSIVKEEAEEYHYSCTECNAIFETVDAWTDHQVAEHNQVAHHCDQCEKKFLRPSELAEHKNTHLRVKFYPCSVCPNSYSTPQKLSEHVQQSHPGIGAVAAAESEFFCDICIRAFKSRQAYSNHMRIHAKVPTTNRKPAIVKEGFAPQIIGKPIKQYPMVQPGFVSFKPNYNIPNAPYSCDICGKGFMHKKNIWKHKKVLHADILVDRHDSEENTMQASTEEEEFNPDENGAILSTPQFNSFNFANLNNAQQTPPEISHECELCGKRFPLRTSLWKHKRAKHGIVNPSTSGSNEVSQPSASGEGSSRSSCTICRITFSDKKSYYRHRKNVHKSTVQMCKICGKPLSSTLELYEHLKAAHARELLGYNANQGSSKSQDVSQDMEPDYENDQESVDPSVDYQARYPCDTCGKQFVGLLALQNHQCINQVASQQPQTFDCEICHKSYTSISALKSHRGWHLRSPDGKAAANNSGLWMPQHKVTSKISKHEVIDPSQLAKVTHTPTPPPVTASVAKRRLPPEVEVTVVNPNKKLRSDDSVDMDMQNSGSMEDRYCTICDKEFTKRAAYQRHMDEVHQPNSVFCPVCDKSFTRKSTLLIHMKKHYESGEGSSSATGQGDDDYSCDLCGAQYDNDQALRAHRARHHGEDEESAEESDDGNVPIAPPGEFTCGQCGDGVATPRDLIAHRTMHATPTKFFCNICKVYFARALDLSSHTRARHADNEKVFFPCAMCDRFYMNKKSLQRHIEMAH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00017541;
90% Identity
iTF_00758469;
80% Identity
-