Basic Information

Gene Symbol
Trerf1
Assembly
GCA_943734765.2
Location
OX030920.2:9696433-9741512[-]

Transcription Factor Domain

TF Family
MYB
Domain
Myb_DNA-binding domain
PFAM
PF00249
TF Group
Helix-turn-helix
Description
This family contains the DNA binding domains from Myb proteins, as well as the SANT domain family [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 6.9e-09 9.4e-06 25.7 0.0 2 45 1709 1753 1708 1754 0.90

Sequence Information

Coding Sequence
ATGCTGCTGAACGTTTGCCTCGCCGTCCAGAACAGTATCCGGTTGCCGCTGGCCGGCCTGGCCCCTCCCCGCGTGTTGATGTGCAGTGCCTCGATGGGCGCGGAAGGATCGGTCACGCTACAGCTGCGCGAAGCCGTCCCGGCACCGGATGCGACCGGTTCGCTCGATGGCGCCCTCACGATCGGCTATCCGGACTCGGAGATGCTGGCCGACATGCTCGGCACCTTCCAGGGTGCCTCGACTGGCGGGGCCGACTCCGACGGTGGCAGCTTTGACCTGCTCCAGGACACGGGCCGGACGGCGGCCGAACAGATCGAGCACATCCTCACGAAATCCACCGCTTCCAGCTCGTCCTCGCTAGGCACGAAAGCAGCCACGGAGAAAGCGAATGCAATCACCAACCGCCTGAGCAGCTCGTCCAGCACCAGCTCGTCGccttcgtcatcgtcgtcgtcgttgtcgggcGTTCTGCATCACGGCACCACGATGGTGACCGTGAAAAGTGCCGCCAGTGGCAGCAGCCCCAGCGCCAGCATTGCCGCGGCCAGCCccaccgcctccaccaccagcctTGTCCTGACGGCCGTCGGTCGCAGCGAGACGATTTCGCCGGCGATGGCTTCCGGCAACAGCTCGGCGGCCTCGTCACCGTCGGCCGCCTCCTCGCCCGGCGGGCTGGCGAAGAAACCCCGGCCCAAGACGGTCTCACCGACCCGGCACGGGCCGCAGCAGTGTCAGGTCTGCAGCAAAGTGTTCGGGAACGCGTCCGCCCTGGCCAAGCACAAGCTGACGCACAGCGACGAGCGGAAGTACGTGTGCGGCATGTGCTCGAAGGCGTTCAAGCGGCAGGATCACCTCAACGGCCACATGCTGACGCACCGCAACAAAAAGCCGTACGAGTGCAAGGCGGACGGATGCGGCAAGTCGTACTGCGATGCGCGATCCCTGCGGCGTCACACGGAAAATCATCACACGGCGCTCGGCCTGGCGGGTGGCGCTTCCGGCACGGCCAGCCCCGGCCCCGGCGGAGGCAGCAATGCCGGGCCACCCGGGGGGCTCAGTCTGTCCCCGGCGACGGCTAGTGGTGACGCTAGCTCTCCGCACGGCGCCACGCTCGTGCAGTTCAGTGCCAACGGAAGCAGCGGAACGACCGGTTCCGGTAGCTCCAGCAACAGCAATTGCAGCCTTTCAAGTAGTTCGAGCAGTAGCAGCTCAagcagtagtagcagcagcagtagtagcagcagcagcagcagcagcagtagtagtagtggcAACGTGAGCGACTCCAACTCCAGCTGCAAGTCACCATCGCCAAGCTCGCCGGCGCCCGGTTCCGGCAACGAGGGTCTCACCCGTCAGCAGCTCGATCTCATCTCGCAGATCATGCAGCAGACGAAGCAAGCGAacgcggccgccgccgccgccgctgccgccgctgcctcctcgtcctcctcctccagctCGAGCAACGCTTCCAACAACACCGCGTCATCCAACACCAACGCTTCGGGTACCGGAGTTGGTGGCCAGAAAGTTCCGCTTCGTCCGCGGACCTGGAACATGCAGGGCACCAGGTTTCCGGCATCGCGACGAAACAGCCAAGCATCGAACGGTGTCTTCGATCCCTTCGCAACGGTCGGTCGGAAGCTGTACAGCCAAAAGCGAGCTGGCAACGGGCCCATTTTCACGCCGGTGCACCGAGCCGCAAGTCCATTCGCAAGTCCCGCCAATGTGGCCAATCGTCGGCATCGGCATCGCTCCCGTGGCGGATGTGAGCATGTCCTTAGCAACTTGCTGTTTATGACTTTCTTCAGCTGCACCTGCTTGAGCCACCTGGCAACGTggCTGCAACTCAGCCAGAACAAGCTGTCCGCAACCGCAAcgtcgtcgacgacgacgacggcgacgctGGTGAGCGCCGTCCCGAGCGTGTCCTCGCTAGCAGCCGCATCGACGGTTGCGTCATCGTCCCTCACCAGCACCCTCgtgtccaccaccaccaccgccaacagcagcaccaacaccaaGGTGCCAAACGCTGGCAGCGCAAGTGCCGATCCTAATGGACCACTCACGGCGCCGTCGGGCTCGGTGTCGTCCACAACTGCGTCCGGTGCGGTCGGTGCGGTTTCGACGGCCAACTCTGCCACGGCAACCACCACActcaccaccgccaccaccactaccaccaccaccagccaaCCCCAGCAATCGGCAAccggcagcaacaacagcaacaacaacaagctcGAGCAGAAACCGGTCGAGTGCAATCTGTGTCACCGCAAGTTCAAAAATATTCCCGCCCTCAACGGGCACATGCGGCTGCACGGGGGCTACTTCAAGAAGGACTCGGAGGCGAAGAAATGTGATAAGAAGGAGAACACCGGGCCACCGCTGCAGACAGCCAGCGTTGGCGTGCGGGCGCTGATCGAGGAGAAGATCATCAACAAGCGAAGCAAGGACCTGAAGAATCTATTGTTGAAGGGTTCGTTCGTGGTGCCGGCGCCGCCCCTGACCGCCCGCCGGCTGATCGAGGCCAGCGAAGCATTCCTCTCGCCGAAGCCGGGCACGGTAGCGATCGTCTCGACGCAGAACGGCACCACGCAGATCATCAACACCGGGACGCTCCACTCGAAGGCAACCATCCTGACGGCGAGTAATGCGGCCAGCACCAGCGCACCACCCGCGATCACGATCAACGggctgacgacgacgacggccgcCGGTACGATCATGGCCACGGGCATCCCGCCCGGGACGGAGCTAAAGGATGCCACGTTGATCGAGCTGCTGAAGCGCGGCACGAAGGTGGCGGTGAAGCGAGCAGCAACGCCGATACtcaaccaacagcagcagtcgGTTGCGTCGTCCATTACGACCACGACCTCGAGCTCTTCGGGAGCCGGGAACCTTATCAGCACCGGTTCGCGATCGGTTGTGCTACCCGGGACGACGAAGCTAACGACGACATCCTCGAGTGGTCTGATGAGCTCGACAGCGGACAGTGGTCCACTTTCGCTGACGATCTCCCAGGCCACGGGAGGTAGTACAGCTGGGGACGTGTTCACACTGGCCTACTCCACCGACACCGGTGGAGGGACGACCTTCTTCAGCGATAACGACGTCTACAGCGTGAGTGAAACGGCAATGCTCCTGCAAGCCGTCGATTCCATCCAGCTATTGCAGGACTCCAACTCCGCCGAACCGCTGGACGAAATCGCCCTCTCGGACTACAGCTCCATCACCGACCAGGGTTTTACGCCGTCGCGCCAGATTCAGGCCGTGCTCGATTCTCCGCTACCCGAGAGTCTCGCCGAGTTCGGGGCTCTCAACTCCAAAGACTTCGTCCTGTACGGGAGCTCGCAGCCGTCGTCCGTTAGTAACGGACCGTCGGGCAACTCCACCGGCGCCGGCACTAACCTGCTCGAGTCACCGTCGGGTGCGCACCTATCTCCGCTTCCCTCACCATTGGCCTACCCAACGCCACCGGCTTCGCATGAGGCGGTGGCCCAGGCATCGCCTTTCCTAGACGACTCGCGCCACTTCACCGATGCGGGTTCGTTCTTCGACGACAAGCGTGGTCAGAACTTCCTCGACGATGGGTTCTTCAAGAGCGAGCCCAAGGGCGATGAACACGGTGCGGGACCGGGAGCGGGTAAGCTTACCGACAGCGAGAAGATACTGGCGCTGAAGAACGAGCTGCTTGACCATGAGCACCACGATCTGTTCCGGTCGAACAAGAACCTGTTGGACGAGCACTGCTCGGAGCTGTTCAAGTCGGAGGATAGCTTTTTCGCCGAATCGAAACCGTCGCCGGTCGACGGGACGTCCAAGATGAACCTGGACTTCCTCGACGACGCGCAGGTGTTCATCGAGGAGACACGGAACGCTGCCTCGCCGCTCTCGAATGCGTTCTTCTCCGCCACCATGCACGCCGCATCCGCCGAGGAGGTGAAGGAGGCGCTCGAGGTGGTACTACCGCACGACGATGACATCGGCGTGTCCGAGGGTGACATCGACCTCTACTACCTGAACGGCCTTTCCTCGCTGCAGTCGCAGATGATGCCCAACTCGGACGATCCGCTGCTGTCGTCCTCGCCGAAAGACTTCGCCCACCGTCAGCATCAGAAGTTCCTGTTCGAGCAGAGCCAGCAGCAAGCGCTGCAACACcatcagcaccagcagcaacaaatccagcagcaacaccttcgacagcagcaacagcagcagcagaatcaTTCATCCACGCACAATCATCCACTGCAGCAGCAAGTGGCCGCCGCCAACAACTGTATGCCACCTAGTGCCAAAAAGTCGAAACCTTGCGTCGGCGACTCCGGGACGATCCTCGCCGGTGACTCGAGCAAGGTCCCACTCACCGTACAAACCGAACCGATGTCCAAGGGCACGGACAGTGTGTTCCTCAGCCCGAGCAGCCTGTCGTCGCACAgctcttcgtcgtcgtcgtcgtcctcgatGGCGACTTCCGCCGCTTCGCCCAAGCTCCAGCACGCCCTCCTAGGAGGCGGTGGAGGAAGTATCATGTGGCCTCGCAAGCGATCCCAGACATCCACCGGAGGCAACGGGCTGAGCCACCCGATGGGGCAACGTAAGCCAACCGTCTACCTGTCCAAGCTGCGCCGTTCGACCACGACGTCCCTCCCGGCCGTTCACTACACGCCTTCGCCTATGCTGAACCCGGAACGAACCGGTTCCACCGGGCTGTACGCAAACGTGGTGCATAATCGCGCGTCCGGCCTGGACACCGATCTCGACAGTACGATGGACAGCACGAGCGACATCTTCTCCGAGCCGCCCCTGCCTATACGGCCCCGGATCAACCTCGGTCCGGACTATCAGGCAACGCTGCCCGACTGCACGCGTCCCAGTGTCTACAGTGCGCTGCAGGGGTACTCCGCAAACCCGACGCAACTGTGGGATCCTGCGGTCGCACACAACGAGCGCCAGGTACAGCGTTTCATCGAACTGGCGCGATCTTCGGCCGCCCCCCTCGGTTGCCACTCGGAGGAGAACGCCCTCCAGGCGCTGCTGGAAGCGAACGGCGAGATTCACGTCGCCATCCTGAGCATGCTGCAAGCGCCACCGGCAAGCATCCATCGCCGCTGGACCGCCGGTGAAATCGAGCAATTCATCCAGGGTCTCGAGAGCTACGGCAAGGACTTCCATCGGATCGCCCGCGAGCTCCTGCCCGCCAAGTCGACGGCCGACTGCGTCCAGATGTACTACTTCTGGAAGAAGCTCTGCATCGACTACAAACATTCGCACGGCGGCGCGCACCGGCTCGTGGACGGGCTGGTGGCGTCCAAGTTCGCCGGTTCATCATCGCCGTCCCCACCACCGACTGCCCCtgcaccacctccaccaccaccaccggtggaAGACCTGTTGATGGACCATCTGGACTATACAAGTACCACGATCGGCTCGGCGAAGGGTCACCACTCGACTCAGTCGACGGCTTCGACGCACGGAAGTGCTCATCAGCCTTCCGGTAACGCACACAATGCGCCCAGCGATGTCCGACCGCACGTATGCGAGGTTCCTGACTGTTCAGCGAGCTTCTCGTCGAAAGCGGCCCTTCACGGTCACATCCGCATTCACTGTATCGGACGTAGCCACAGCGCAATTCAAAATGGTAATTTCTTGAGTGCCGCCGGTAACCCCATTAACCCTAACCTCATACCGACAAAGGATGACTATCCCTGCAAGGTGTGCGGCAAGGTTTTCAATAAGGTAAAAAGCCGAAGCGCCCACATGAAGTCACACCGGCCCCAGGATGCAAGCGATCAACTGCAACACCAGCTGCAactgcaccagcagcagctgcagcaacgCCAGCAAGATAGCGAAAAACAAGGCACCACCGGCGACCAGCAGCCATCCAAATAA
Protein Sequence
MLLNVCLAVQNSIRLPLAGLAPPRVLMCSASMGAEGSVTLQLREAVPAPDATGSLDGALTIGYPDSEMLADMLGTFQGASTGGADSDGGSFDLLQDTGRTAAEQIEHILTKSTASSSSSLGTKAATEKANAITNRLSSSSSTSSSPSSSSSSLSGVLHHGTTMVTVKSAASGSSPSASIAAASPTASTTSLVLTAVGRSETISPAMASGNSSAASSPSAASSPGGLAKKPRPKTVSPTRHGPQQCQVCSKVFGNASALAKHKLTHSDERKYVCGMCSKAFKRQDHLNGHMLTHRNKKPYECKADGCGKSYCDARSLRRHTENHHTALGLAGGASGTASPGPGGGSNAGPPGGLSLSPATASGDASSPHGATLVQFSANGSSGTTGSGSSSNSNCSLSSSSSSSSSSSSSSSSSSSSSSSSSSSSGNVSDSNSSCKSPSPSSPAPGSGNEGLTRQQLDLISQIMQQTKQANAAAAAAAAAAASSSSSSSSSNASNNTASSNTNASGTGVGGQKVPLRPRTWNMQGTRFPASRRNSQASNGVFDPFATVGRKLYSQKRAGNGPIFTPVHRAASPFASPANVANRRHRHRSRGGCEHVLSNLLFMTFFSCTCLSHLATWLQLSQNKLSATATSSTTTTATLVSAVPSVSSLAAASTVASSSLTSTLVSTTTTANSSTNTKVPNAGSASADPNGPLTAPSGSVSSTTASGAVGAVSTANSATATTTLTTATTTTTTTSQPQQSATGSNNSNNNKLEQKPVECNLCHRKFKNIPALNGHMRLHGGYFKKDSEAKKCDKKENTGPPLQTASVGVRALIEEKIINKRSKDLKNLLLKGSFVVPAPPLTARRLIEASEAFLSPKPGTVAIVSTQNGTTQIINTGTLHSKATILTASNAASTSAPPAITINGLTTTTAAGTIMATGIPPGTELKDATLIELLKRGTKVAVKRAATPILNQQQQSVASSITTTTSSSSGAGNLISTGSRSVVLPGTTKLTTTSSSGLMSSTADSGPLSLTISQATGGSTAGDVFTLAYSTDTGGGTTFFSDNDVYSVSETAMLLQAVDSIQLLQDSNSAEPLDEIALSDYSSITDQGFTPSRQIQAVLDSPLPESLAEFGALNSKDFVLYGSSQPSSVSNGPSGNSTGAGTNLLESPSGAHLSPLPSPLAYPTPPASHEAVAQASPFLDDSRHFTDAGSFFDDKRGQNFLDDGFFKSEPKGDEHGAGPGAGKLTDSEKILALKNELLDHEHHDLFRSNKNLLDEHCSELFKSEDSFFAESKPSPVDGTSKMNLDFLDDAQVFIEETRNAASPLSNAFFSATMHAASAEEVKEALEVVLPHDDDIGVSEGDIDLYYLNGLSSLQSQMMPNSDDPLLSSSPKDFAHRQHQKFLFEQSQQQALQHHQHQQQQIQQQHLRQQQQQQQNHSSTHNHPLQQQVAAANNCMPPSAKKSKPCVGDSGTILAGDSSKVPLTVQTEPMSKGTDSVFLSPSSLSSHSSSSSSSSSMATSAASPKLQHALLGGGGGSIMWPRKRSQTSTGGNGLSHPMGQRKPTVYLSKLRRSTTTSLPAVHYTPSPMLNPERTGSTGLYANVVHNRASGLDTDLDSTMDSTSDIFSEPPLPIRPRINLGPDYQATLPDCTRPSVYSALQGYSANPTQLWDPAVAHNERQVQRFIELARSSAAPLGCHSEENALQALLEANGEIHVAILSMLQAPPASIHRRWTAGEIEQFIQGLESYGKDFHRIARELLPAKSTADCVQMYYFWKKLCIDYKHSHGGAHRLVDGLVASKFAGSSSPSPPPTAPAPPPPPPPVEDLLMDHLDYTSTTIGSAKGHHSTQSTASTHGSAHQPSGNAHNAPSDVRPHVCEVPDCSASFSSKAALHGHIRIHCIGRSHSAIQNGNFLSAAGNPINPNLIPTKDDYPCKVCGKVFNKVKSRSAHMKSHRPQDASDQLQHQLQLHQQQLQQRQQDSEKQGTTGDQQPSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

90% Identity
iTF_00096316;
80% Identity
iTF_00109371;