Akol012582.1
Basic Information
- Insect
- Anopheles koliensis
- Gene Symbol
- -
- Assembly
- GCA_000956275.1
- Location
- JXXB01005567.1:3504-5522[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 3.9e-07 0.00099 18.8 0.0 5 27 240 262 238 263 0.92 2 5 0.0096 24 4.7 0.0 7 36 341 370 336 372 0.75 3 5 0.032 81 3.0 0.0 4 18 420 439 417 454 0.87 4 5 0.00067 1.7 8.4 0.2 7 39 536 568 533 573 0.91 5 5 1.3e-08 3.4e-05 23.5 0.1 2 35 628 661 627 667 0.89
Sequence Information
- Coding Sequence
- ATGGCACAGCTGCCCAGTCAACCGGCCAAACCGATGCTGATGTGGCTTGACTATAAGGACCATATGAAGCGCACGTTGGGGTATATCTTCGATTGCCAGCAATTCACCGATTGCCGACTGGTCGTTCCCGGCGGTAAACTGTACGCAAACCGTGCTATTCTCAGTATGGCATCCAGCTTCTTTGAGAACATCTTCTCCACCGCGCCTCCGTTGTCTGCGGGACAAGCAGCAGATGTTCCGACGGTTCTTATCCCAGATCTTACGCTCTCCACGCTAAGAGTTGTGATTCAATTCATCTATACCGGCAGCGTAACGCTACGTTCGACGGAGATGCTGCCGTTCATGGAAGCATGCCATATGTTGCAGATTCGGGGCGTCGAATGTTACGACAACGTAGTGATGGGCATTTTCATTGAAGGTTCCACTGGGGGAGGGATGGAATCGGCACGCGCAAGTTCGGTGTTATCTAGCGAGTCCGCCAGTAACAATCCCAGTAACTCCATGGACGATGGAGACCCGGAGCACGATGTGCAAACAATGGCATGGAGCGAAGAGCCATCGGAAACGATGCCTTTAGATGAAGTGTTGATCAAGATAGAGCCTTGTGACGCGCATGAGACAGAGGAACAGCAGGATCCATTTCGAAAGGAGGACAGAAGAACGCAAGCGGAAACGCCAATAGCACGGGGACAAATTCTTAAAACGTACGCCACCTGTCTGACAGCAGCGATCGTTGCGGTAATGAACGGCGGAATGACCTTAAGGAAAGCCGGGGTTCTGTACCATGTGCTGTGTCATAAGCTGGGGGACTGGACACAAAGGGTGGAGCGTGCTGTGCGGTCCCAAGCAAGCGATGACAGCAGTGCATTGCAATCGCCAGTGGCAGAAGCCACGATCGAGACCGTACTGGAACAAAGCAAGCGCGATGTGAACGACATATTGGACGGCGTTGATGAGTCTGCGAAGGCGGCCATCTTGAGCAAGAGGAGGCATACGGTAACCTACGATGCCCGGCTGATGGCTGCCCAAGATCAAATTCTCCAGCAAGGTGTAACCGTCAGTGCAGCGAGCATGCGGTACAACATCCCTGAAAAAGTCATAACAAATCGTCTACATCCTGTGATCAACGGGCCTAGCCCGAATTGTAGCACCAAACAGACACATGTCAGATGGCAGCCGAAACAGTCACCAGTGAGTATAAGAAATAAAGCTACTCTAGCGATGTTTCGGAGAATCTACACACCAGAACGCCTTGCCAGCCTGAAGGAAGCGATCCGAGCGATCGTGGTCGATGGAAAGTCAGGAAAATTGATGAGCCGAACGCACGGGTTCGCTAATCAGGTTTTGTACCGTCATGCTCGCAACGTGGCGGTGCAAACTCGTAGCAATCGATCGGGAGATCCACGGTCCTTTGCGGAGCGGGTGGATGCTGCCATCGATGAAATGCTGGGAACAGAGAAGAAAGACGAGCCGCAGAAGAGCCCACAGCCAAACAATCCTCCGATCCAGCTCCCACCGTTGGTGCCGATCGTGCCGAATGCATCGCGCTTGGGTAAGCTGTACTGGGGGCAGAATGATCGAGGATCGTTAACTGCCCGGGTGAAGCAGGCGGCCAGTGCGGTCGTTACCGGACAGATGCAGTACCCAGAAGCGTCGCGTGCTTTTCGGTTGAACAAAAGCAGTATCTTTCGATATGTGCAGAAATTAAATCACCAATCGGTAcaaacaccggcaccgaccgcATCGAAGACGTCGGAAAGGTTGTCAGCTACGGCAGTACAAGTGGTGCACCAGGAAGAGAGCACCGAGGTCGATGTGCCCACGGCCCCGAAACCACTGGACGTGCCGTTAGAGATACCGGAATTGATTCCCTTCAGCATCGACGATCGGTTGGCGGCAGCGGTCAAGGCAATCACGGAGCGGGGCTTGAGCTATCGGGAGGCATCGTTGCGCTACGACATCTCCAAGGTGGCGTTGTGGCGAAAgataagcaaacaaagcagAGATGATCATGTTTAA
- Protein Sequence
- MAQLPSQPAKPMLMWLDYKDHMKRTLGYIFDCQQFTDCRLVVPGGKLYANRAILSMASSFFENIFSTAPPLSAGQAADVPTVLIPDLTLSTLRVVIQFIYTGSVTLRSTEMLPFMEACHMLQIRGVECYDNVVMGIFIEGSTGGGMESARASSVLSSESASNNPSNSMDDGDPEHDVQTMAWSEEPSETMPLDEVLIKIEPCDAHETEEQQDPFRKEDRRTQAETPIARGQILKTYATCLTAAIVAVMNGGMTLRKAGVLYHVLCHKLGDWTQRVERAVRSQASDDSSALQSPVAEATIETVLEQSKRDVNDILDGVDESAKAAILSKRRHTVTYDARLMAAQDQILQQGVTVSAASMRYNIPEKVITNRLHPVINGPSPNCSTKQTHVRWQPKQSPVSIRNKATLAMFRRIYTPERLASLKEAIRAIVVDGKSGKLMSRTHGFANQVLYRHARNVAVQTRSNRSGDPRSFAERVDAAIDEMLGTEKKDEPQKSPQPNNPPIQLPPLVPIVPNASRLGKLYWGQNDRGSLTARVKQAASAVVTGQMQYPEASRAFRLNKSSIFRYVQKLNHQSVQTPAPTASKTSERLSATAVQVVHQEESTEVDVPTAPKPLDVPLEIPELIPFSIDDRLAAAVKAITERGLSYREASLRYDISKVALWRKISKQSRDDHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00103109; iTF_00100234; iTF_00106340; iTF_00106501; iTF_00100414;
- 90% Identity
- iTF_00103109; iTF_00100414; iTF_00100234;
- 80% Identity
- iTF_00103109;