Afar004068.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915041.1:11958920-11960947[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 4.5e-07 0.00073 18.7 0.0 5 27 239 261 237 262 0.92 2 5 0.034 55 3.1 0.0 7 36 340 369 335 371 0.78 3 5 0.037 59 3.0 0.0 4 18 419 438 416 453 0.87 4 5 0.0014 2.3 7.6 0.3 7 39 535 567 532 572 0.91 5 5 1e-08 1.6e-05 24.0 0.0 2 35 626 659 625 665 0.90
Sequence Information
- Coding Sequence
- ATGGCACAGCTGTCTAGCCAACCGGCCAAGCCGATGCTGATGTGGCTTGACTATAGGGAACATATGAAGCGCATGTTGGGGTACATATTCAATTACCAGCAATTCACCGATTGCCGGCTGGTCGTGCCCGGCGGTAAAGTGTACGCAAACCGTGCCATTCTCAGTATGGCATCCAGCTTCTTTGAGAACATCTTCTCCAGCGCGTCCCCGTTGTCTGCGGGACAAGCAGCAGATGTTCCGACGGTTCTTATCCCAGATCTTACGTTCTCCACGCTAAGGGTTGTGATTCAATTCATCTATACCGGCAGCGTAACGCTACATTCTACGGAGATGCTGCCATTCATGGAAGCATGCCATATGCTGCAGATTCGAGGCGTCGAATGTTACGACAACGTAGTGATGGGTATTTTCATTGAAGGTTCCACTGGGGGAGGAATGGAAACTGCACGAGCAAGTTCGGTGTTATCAAGCGAGTCCACTAGTAACAATCCTAACTCAATGGACGATGGGGAGCCGGAGCACGATGTGCAAACAATGGTATGGAGCGAAGAACCATCGGAAACGATGCCATTAGATGAGGTGTTGATCAAGATAGAACCTTGTGACGCGCATGAGACAGAGGAACAACAGGATCCATTTCGAAAGGATGATGGAAAAACGCAAGCGGAAACGCCGATGGCACGGGGAAAAGTTCTCAAAACGTATGCCACCTGCCTGACAGCAGCGATCGTTGCAGTAATGAACGGTGGAATGACCTTAAGGAAAGCCGGGGTTCTGTACCATGTGCTGTGTCATAAGCTGGGGGACTGGACACAAAGGGTGGAGCGTGCTGTGCGGTCCCAAGCAAGCGATGACACTAGTACATTGCAATCGCCAGTAGCAGAAGCCACGATCGAGACCGTACTGGAACAAAGCAAGCGCGATGTGAACGACATATTAGACGGCGTTGATGAGTCTGTGAAGGCGGTCATCTTGAGCAAGAGGAGGCATACGGTAACCTACGATGCCCGGTTGATGGCTGCCCAAGATCAAATTCTCCAGAAGTGTGTAACCGTCAGTGCAGCGAGCATGCGGTACAACATCCCTGAAAAAGTTATAACAAATCGTCTACATCCTGTGATTAGCGGTCCTAGCCCGAATTGTAGCACCAAACAGACACATGTCCGATGGCAGCCGAAGCAGTCACCAGTGAGTATAAGAAATAAAGCTACTCTAGCGATGTTTCGGAGAATCTACACACCAGAACGCCTTGCCAGCCTGAAGGAAGCGATCCGGGCGATCGTGGTCGATGGAAAGTCAGGAAAATTGATGAGCCGAACGCACGGGTTCGCTAATCAGGTTTTGTACCGTCATGCACGCAACGTGGCGGTGCAAACTCGTAGCAATCGATCAGGAGATCCACGCTCCTTTGCGGAGCGAGTGGATGCTGCCATCGATGAAATGCTGGGAACTGAGAAGAAAGACGAGTCGCAGAAGAGCCCGCTGCCAAACAATCCACCGATCCAGCTTCCACCGTTGGTGCCGATCGTGCCGAATGCATCGCGGTTGGGTAAGCTGTACTGGGGGCAGAATGATCGAGGATCGTTAACTGCCCGGGTGAAGCAGGCGGCCAGTGCGGTCGCTACGGGACAGATGCAGTACCCAGAAGCGTCGCGTGCTTTTCGGTTGAACAAAAGCAGCATCTTTCGGTATGTGCAGAAATTAAATCACCAATCGGTACGAACACCGGCACCGACCGCATCGAAGACGTCGGAACGGTTGTCAGCTACGGTAGTACCAGAGGTGCACCAGGAGGATAGCACCGAGAACGATGTGCCCACGGCTTCGAAATCGGACGTGTCGTTAGAGATACCGGAATTGATACCATTCAGCGTCGACGATCGGTTGACGGCAGCGGTCAAGGCAATCACGGAGCGGGGTATGAGCTATCGGGAAGCATCATTGCGCTACGACATCTCCAAGGTGGCGTTGTGGCGAAAGATAGGCAAACAAAATAGAGATGATCGTGTTCAAGTGGAAAGGGAATAA
- Protein Sequence
- MAQLSSQPAKPMLMWLDYREHMKRMLGYIFNYQQFTDCRLVVPGGKVYANRAILSMASSFFENIFSSASPLSAGQAADVPTVLIPDLTFSTLRVVIQFIYTGSVTLHSTEMLPFMEACHMLQIRGVECYDNVVMGIFIEGSTGGGMETARASSVLSSESTSNNPNSMDDGEPEHDVQTMVWSEEPSETMPLDEVLIKIEPCDAHETEEQQDPFRKDDGKTQAETPMARGKVLKTYATCLTAAIVAVMNGGMTLRKAGVLYHVLCHKLGDWTQRVERAVRSQASDDTSTLQSPVAEATIETVLEQSKRDVNDILDGVDESVKAVILSKRRHTVTYDARLMAAQDQILQKCVTVSAASMRYNIPEKVITNRLHPVISGPSPNCSTKQTHVRWQPKQSPVSIRNKATLAMFRRIYTPERLASLKEAIRAIVVDGKSGKLMSRTHGFANQVLYRHARNVAVQTRSNRSGDPRSFAERVDAAIDEMLGTEKKDESQKSPLPNNPPIQLPPLVPIVPNASRLGKLYWGQNDRGSLTARVKQAASAVATGQMQYPEASRAFRLNKSSIFRYVQKLNHQSVRTPAPTASKTSERLSATVVPEVHQEDSTENDVPTASKSDVSLEIPELIPFSVDDRLTAAVKAITERGMSYREASLRYDISKVALWRKIGKQNRDDRVQVERE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102951;
- 90% Identity
- iTF_00102951;
- 80% Identity
- iTF_00100414;