Akol012581.1
Basic Information
- Insect
- Anopheles koliensis
- Gene Symbol
- -
- Assembly
- GCA_000956275.1
- Location
- JXXB01005567.1:1570-3084[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-10 1.3e-06 28.0 0.0 2 39 212 250 211 254 0.94 2 4 1.5e-09 3.8e-06 26.5 0.0 2 35 277 311 276 316 0.90 3 4 0.0032 8.2 6.2 0.0 23 37 349 363 334 370 0.80 4 4 1.8e-12 4.6e-09 35.8 0.1 4 39 390 425 389 428 0.94
Sequence Information
- Coding Sequence
- ATGGCCTCGACGGATTCTTCACCCAAATCCAACAACGTACAATGGATCGACTTCCAGCGGCACATTCGGAGCACGTTTCAAGACATCTTCGAGGACCATCAGTACCCGGACTGCCGTCTGGTTATGGCGGACGGCGGTGAACTGTTGGCTAACCGTACCGTCCTCAGCATGGCGTCCAAGTTCTTCGAGACAATCTTCTCCGACACCTGTATGGCGCATCAACCCGTGACGGTGTTAATACCGGATCTGACGCTGCTGTCCGTACAGCTCGTTCTACGGTTTATCTACACCGGTGCGGTCAGTCTGCGACCGTTCGAGGTGGCTCCGTTTATTGAGGCGTGCAGTTTGCTTCATATACGTGGAATAGAGTTTGTTGGGGATCGAGTTGAGGGCATACATTTCGGGCAATCCCTTCACGATTCAGCGGGCGAGGTGGTGGAATCGACCAAAGAAAATACGTCCACCACTGAACAGCCTTATGGGACGGTAGTAAGCGAACGGTTCGAGGTGTTGGCAAAAGATGGTGCACAAAAAGAAGCCATGGTAGCGCAAATGGAATCCCTCCCGGAAGAGGAAACGATTGAGGAAGCAGATAACGGGCGAGAAAGGATTCCGGACGATGGTACGCAATACGACGAGCGTTTGAATCAGGCAATGCATGCCATTCTCAACGATGGTACAAGCTTTCAGCAGGCATCCGTTCAATACAACATCGAAGAAAGTGTACTGTGGcgaaagagaatgaaaacgATCGATGTCAAAACTGACCTGGAACCACCTGAACCGGAAGCATTAAGCGTTGCACCCACTTTCAATCCCTCTAGCTACGAAACTCGTCTAAAGGCGGCTATCGATGCGATACTGCACGACGGCCTAAGCTTCCGCGTCGCCTCCCACCGGTACAACATCGCCAAGACGGTCCTGTGgcgaaaaacgatcaaactACCTCGACCCCTCACCACCCGGTCAACGGTACCGCAACTCGCGGGCCGCCGCATGGAAGCGATCGATGCGCTAAAGACGGGCGAGAAGTTAGTAAGCGTTAGCCGTCGGTTCGAGATTCCACTGTCGACGTTGCACCGGGACAAGCTGCGACTGTACAGCAGCGGTGTGCTGCCGGGTAAGGTGACGCTAAAGCAGCGCGACAAGGGCGAACCGTTCAAGCATCGGTTAGCGGAAGCGGCGAACGAGTGCGTTGCGGGCCGGATGTCACTGTCGGAGGCGGCTCGAGTGTACGGGCTGCCGAAAACGTCCATCTGGCGGAAGGTGCGCGGTGTACAGGCAAACACCACCGAGTGGGAAGGCGTTAGAGAAAGGGGCGAAAGTTCGGCCACTGGTCAAAAAACAACGCCGGAAGTCAACGAACGCCCGGAGCTTCGCGACCCTTTGAACGGTGTTCATGAGATAGAGGATATGGCGGAACAGGGGTTGGACGTAACGGCGGCGGATTTGGCACAGCTTAAGTTTCATCTGGCCACCAGCTACGAACATCACCTGATGAATGGCGGCTTATAG
- Protein Sequence
- MASTDSSPKSNNVQWIDFQRHIRSTFQDIFEDHQYPDCRLVMADGGELLANRTVLSMASKFFETIFSDTCMAHQPVTVLIPDLTLLSVQLVLRFIYTGAVSLRPFEVAPFIEACSLLHIRGIEFVGDRVEGIHFGQSLHDSAGEVVESTKENTSTTEQPYGTVVSERFEVLAKDGAQKEAMVAQMESLPEEETIEEADNGRERIPDDGTQYDERLNQAMHAILNDGTSFQQASVQYNIEESVLWRKRMKTIDVKTDLEPPEPEALSVAPTFNPSSYETRLKAAIDAILHDGLSFRVASHRYNIAKTVLWRKTIKLPRPLTTRSTVPQLAGRRMEAIDALKTGEKLVSVSRRFEIPLSTLHRDKLRLYSSGVLPGKVTLKQRDKGEPFKHRLAEAANECVAGRMSLSEAARVYGLPKTSIWRKVRGVQANTTEWEGVRERGESSATGQKTTPEVNERPELRDPLNGVHEIEDMAEQGLDVTAADLAQLKFHLATSYEHHLMNGGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00106339;
- 90% Identity
- iTF_00100233;
- 80% Identity
- iTF_00103112;