Afar003852.1
Basic Information
- Insect
- Anopheles farauti
- Gene Symbol
- -
- Assembly
- GCA_000473445.2
- Location
- KI915041.1:11957038-11958531[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 9.3e-07 0.0015 17.7 0.0 2 38 204 242 203 247 0.92 2 4 3e-09 4.8e-06 25.7 0.0 2 35 270 304 269 309 0.89 3 4 0.0036 5.8 6.2 0.0 23 37 342 356 327 363 0.80 4 4 4.6e-12 7.5e-09 34.7 0.1 4 38 383 417 382 421 0.92
Sequence Information
- Coding Sequence
- ATGGCCTCGACAGACTCGTCAGCCAAATCCAACGTACAATGGATCGATTTCCAGCGGCACATTCGGAGCACGTTTCAAGACATCTTCGAGGCCCACCAGTACCCGGACTGCCGTCTGGTTATGGCGGACGGCGGTGAACTGTTGGCTAACCGTGCCGTTCTCGGCATGGCGTCTAGGTTCTTCGAGACAATCTTCTCCGATACATGCATGGCGCAACAACCCGTGACGGTGTTAATACCGGATCTGACGCTGCTGTCCGTACAGCTCGTTCTACGGTTTGTCTACACCGGTGCGGTTAGTCTGCGACCGTTCGAGGTGGCTCCGTTTATCGAGGCGTGCAGTTTGCTTCATATACGTGGAATAGAGTTTATTGCGGATCGAGTTGAGGGCATACATTTCGGGCAATCCCTTCACGATTCAGCGGGCGGGGTGATGGAATCGATCAAGGAAAATGCGTCCACCACGGAAGTAAGCGAACGGTTCGAGGTGTTGGCAAAAGATGGTGCACAAAAAGAATCGGTAGCGCAAATGGAATCTTTACCGGAAGAGGAAATAATTGAAGAAGCAGATAACGGGCGAGAAAGGATTCCGGACGATGGTTCGCAATATGACGAGCGTTTGAATCAGGCAATGCGTGCCATTCCCAACGATGGTACAAGCTTTCAGCAGGCCTCCAACATTCAATACAACATCGAAGAAAGTGTACTGTGGCGAAAAAGAATTAAAATGGCCGAAGTAAAAACAGACCTGGAACCACCCGAACCGGAAGCATTAAGCGTTGCACCGATTTTCCATCCCTCCAGCTACGAAACTCGTCTAAAGGCGGCTATCGATGCGATACTGTACGACGGCTTAAGCTTCCGCGTCGCCTCCCACCGGTACAACATCGCCAAGACGGTCCTGTGGCGAAAAACGATCAAATTACCTCGACCTCTCACCACCCGGCCAACGGTACCGCAACTCGCGGGCCGCCGCATGGAAGCGATCGATGCGCTAAAGACGGGCGAGAAGTTGGTGAGCGTTAGCCGTCGTTTCGAGATTCCACTGTCGACGTTGCACCGGGACAAGCTGCGACTGTACAGCAGCGGTGTGCTGCCGGGCAAGGTGACGCTAAAGCAGCGTGACAAGGGCGAACCGTTCAAGCATCGGTTAGCGGAAGCGGCGAACGAGTGCGTTGCGGGCCGGATGTCACTGTCGGAGGCGGCTCGGGTGTATGGGCTGCCGAAAACGTCCATCTGGCGGAAGGTGCGCAGTGTGCAGGCAAACACCACCGAGTGGGAGGGCGTTAGGGATAGGGGCGAAAGTTCTGCCACTAGTCAAGAAGCAACGGTGGAAGTCAACGAACGCTCGGAGCTTCGCGACCCTTTGAACGGTGTTCATGAGATGGAGGGTATGGCGGAACAGGGGTTGGGCGTTACGGCGGAGGATTTGGCACAGCTTAAATTTCATCTGGCCAGCAGCTATGAACATCATCTGATAAATGGCGGCTTATAG
- Protein Sequence
- MASTDSSAKSNVQWIDFQRHIRSTFQDIFEAHQYPDCRLVMADGGELLANRAVLGMASRFFETIFSDTCMAQQPVTVLIPDLTLLSVQLVLRFVYTGAVSLRPFEVAPFIEACSLLHIRGIEFIADRVEGIHFGQSLHDSAGGVMESIKENASTTEVSERFEVLAKDGAQKESVAQMESLPEEEIIEEADNGRERIPDDGSQYDERLNQAMRAIPNDGTSFQQASNIQYNIEESVLWRKRIKMAEVKTDLEPPEPEALSVAPIFHPSSYETRLKAAIDAILYDGLSFRVASHRYNIAKTVLWRKTIKLPRPLTTRPTVPQLAGRRMEAIDALKTGEKLVSVSRRFEIPLSTLHRDKLRLYSSGVLPGKVTLKQRDKGEPFKHRLAEAANECVAGRMSLSEAARVYGLPKTSIWRKVRSVQANTTEWEGVRDRGESSATSQEATVEVNERSELRDPLNGVHEMEGMAEQGLGVTAEDLAQLKFHLASSYEHHLINGGL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00106339;
- 90% Identity
- iTF_00100423; iTF_00103112; iTF_00102949;
- 80% Identity
- iTF_00100423;