Agam005326.1
Basic Information
- Insect
- Anopheles gambiae
- Gene Symbol
- -
- Assembly
- GCF_000005575.2
- Location
- NT:39535979-39538885[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0026 0.13 12.3 2.8 2 23 431 452 430 452 0.97 2 11 0.00015 0.0078 16.1 2.0 1 23 458 480 458 480 0.99 3 11 0.018 0.92 9.6 2.0 1 23 490 512 490 512 0.97 4 11 1 53 4.1 0.0 3 23 537 564 535 564 0.80 5 11 3.2 1.6e+02 2.5 0.3 2 9 571 578 570 578 0.87 6 11 5.4e-05 0.0027 17.6 0.2 1 20 611 630 611 631 0.97 7 11 5.4e-05 0.0027 17.6 0.4 2 23 655 676 654 676 0.93 8 11 0.22 11 6.2 2.5 2 23 685 706 684 706 0.95 9 11 9.1e-05 0.0046 16.8 1.8 2 21 713 732 712 733 0.94 10 11 0.00081 0.041 13.8 3.1 1 23 744 766 744 766 0.98 11 11 0.00042 0.022 14.7 2.5 1 23 772 795 772 795 0.98
Sequence Information
- Coding Sequence
- ATGGCCCACATCACCAGTTGTGCGCTTTGTTTAACAGCCGAGTCCCAGTGGTTCGTTCGAGTATTTGACGAAGCTAACACGACGCTCAATATGGCACAGATCATATCGAAATATTTATGGTTTGATGTTAGTCGCGGCATGGTTTTGCTTCCGTGCGTGTGCGGTGAATGCTGGAGCAGTGTGCACGATTTCCATCAATTCTACACCAAACTGGAGAACATTCATTGTGACGAGTTAGTTGCAGCGGACAGTACAGAGCAACAACGTGAGCCAAATGCTTCCATTGCCCTTCTGCCAGAAGAAACCCACCAAAAGGAAGATCAGTTGCAGAAAAGCATCAATGATGGGTATGAAAGGAAGCATGTTCCCACAGTTGAAGTCATTGACAGCAGCGAGAAGAGAAACAACTCAGACAGCGCTGCGAACGAACCAGTGAAACCCCACACGCAAACAGACGCCATGGACACTATGGACAAAGGAGACAAGAAACATTTCGTGGAGGTGGAAGACTATGCTAGCAATGATGATGACACCGGCGGCTATTGCCCGTCGGATGACAACATGCTGGATGGTGATACACTTAACACCGAAGGCAGGGATGAATCTATCGATAAAAAGCCTACGATGAATAACGTAACCGTTGTCGCCATACCTGTGGAACAGCTCTCCGTAAAGCGTGGTAGAGGCCGTCCACCAAAGCCAAAGCTGGAACAGCAAAGCATAGCAGTAGATGCAAAAGAATCTCCAAAGGATACGAGCGCCTCGGAGCAAACACCTGCGAAACGTCCCAGGGGTCGTCCACCAAAGCGAAAGCTGGACATTTCAAGCGCCTCGCCGAACGTTGCTCAGAAAAGTGAAGCACCGCCTGCTGTAATTGAAACGTCACTTGTTGCCACCACGACCGAACCCGCTAAGCGACGCAGAGGTAGACCTCCGAAAAATGCCCTTACCGCCGTTGCGGTACATTCTGGCCGTGGGAGGAAAGCTCACTCTGTTACTGGCAACAAACGGTCGATCGCGCTGCGCACGAAAgtgaagaaagaaataatACGTGGACAGGAGCCAACATACACGGATAGCGGTGAGAGCGAATCGGAGAATGGTTCGGATTATGAAGCGGCGAGTGCTAAAAAAAAGCCGCCAAAGCGTGAGAAGAGCGACCGGGACGAGCGAATATTTAAGTACGTCGATGAGTTTTGCTGCCATTACTGTGTGGAAAATGTGACGTTCAAGCGGTTCGTCGATGCGGACCGCCACTACAAGCTGGTGCACAACGAGCCGGGCTTTCTGAAGTGTACGAAATGCGAGAAGAAGTGTTTTACGCCCGGCATGTTCGTGAGCCACATGGAGACGCACGAAGATCCGGAAAAGTATAAATGCAACATTTGCGGCAAAATAACGGACTGTAACATCTCGCTCAAGAAGCACATGCGAGTGCATTTGAGTCAGCTGGAGGAGAACCTACCCTTCCCTTGCAGTCGTTGCAAACGAAAGTTTGAATCGGAGGAGCAGCGCAACAAGCACGAAAAGCTGCACGTGCCCAAACCGCTGGTCAAGCGGGAAAAGGGCCCGGATCTGGAAGTGCTGGCGTTCTACAAACGCATCTACTGCGATGTGTGCGAAGAGCAAACCCCCGAGTCGACATCGTTCGAGAACTTCTGGGACCTGCGGGTGCACATGGAGCAGGAGCACAACAAGGGAGCGTACCTGAAATGCCCGATCTGCAACAAGAGGAATCTGTGTGAGGTTTGCAAGGAAGTCTATCAAAATCTCGATTCGCACATGGTCAAAGCCCACACACCCACGACTGCGATTCCGGCGGACAGAAAGTACAAGTGTGACCAGTGCGGACGAATGTTTAACTTCCTGGCCAATTTGAAAATGCACATTGACTGTGTTCATGGCTCGAAAGACATCCGTTGCAATGTGCACAAGCGAACAGCTCACACCGACCAGATGCTGATGTGCGAACATTGTCccaaaatgttcaaaacacGCGGCGCGCTAGAGGTGCACAAGGGCATTCACGATGATACGCTGGTGCAGTTTACGACCTGCAAGCTCTGCAACAAGCAGATACGGCTTACCAACATGAAGAAGCACATGACCTCGCAGCACTCCGACGATGGGCCGGTCAGCTGCGAAATGTGTGGCAAATCGTTCCGCTCCATGTTCCACATGAAGCGGCACCAGAAGAACACGTGCGAAGCGACGATCGATTCGCGCAAACACAAGTGCGAAATCTGTGGCAAGGGCTTCTGTTTGAAGCTGACGATGATCGAGCACATGacgacacacacgcgcacgaaCAAGTAccagtgtgcgttttgttttaaatcgtTTGGCTACATTTCGAATCTGTACAAGCATCGCAAGAAGGCACATCCGCTCGAATGGCAAGAGATACAGGCACGTCCGGAGGAAAATATTGCTTCGGTTATAGTTGTACGAACGAATTGA
- Protein Sequence
- MAHITSCALCLTAESQWFVRVFDEANTTLNMAQIISKYLWFDVSRGMVLLPCVCGECWSSVHDFHQFYTKLENIHCDELVAADSTEQQREPNASIALLPEETHQKEDQLQKSINDGYERKHVPTVEVIDSSEKRNNSDSAANEPVKPHTQTDAMDTMDKGDKKHFVEVEDYASNDDDTGGYCPSDDNMLDGDTLNTEGRDESIDKKPTMNNVTVVAIPVEQLSVKRGRGRPPKPKLEQQSIAVDAKESPKDTSASEQTPAKRPRGRPPKRKLDISSASPNVAQKSEAPPAVIETSLVATTTEPAKRRRGRPPKNALTAVAVHSGRGRKAHSVTGNKRSIALRTKVKKEIIRGQEPTYTDSGESESENGSDYEAASAKKKPPKREKSDRDERIFKYVDEFCCHYCVENVTFKRFVDADRHYKLVHNEPGFLKCTKCEKKCFTPGMFVSHMETHEDPEKYKCNICGKITDCNISLKKHMRVHLSQLEENLPFPCSRCKRKFESEEQRNKHEKLHVPKPLVKREKGPDLEVLAFYKRIYCDVCEEQTPESTSFENFWDLRVHMEQEHNKGAYLKCPICNKRNLCEVCKEVYQNLDSHMVKAHTPTTAIPADRKYKCDQCGRMFNFLANLKMHIDCVHGSKDIRCNVHKRTAHTDQMLMCEHCPKMFKTRGALEVHKGIHDDTLVQFTTCKLCNKQIRLTNMKKHMTSQHSDDGPVSCEMCGKSFRSMFHMKRHQKNTCEATIDSRKHKCEICGKGFCLKLTMIEHMTTHTRTNKYQCAFCFKSFGYISNLYKHRKKAHPLEWQEIQARPEENIASVIVVRTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00093697;
- 90% Identity
- iTF_00093697; iTF_00093696;
- 80% Identity
- -