Aara004301.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:38688059-38691267[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0028 0.13 12.2 2.8 2 23 425 446 424 446 0.97 2 13 0.00017 0.0079 16.1 2.0 1 23 452 474 452 474 0.99 3 13 0.019 0.93 9.6 2.0 1 23 484 506 484 506 0.97 4 13 1.1 53 4.0 0.0 3 23 531 558 529 558 0.79 5 13 0.41 20 5.4 1.3 2 23 565 586 564 586 0.89 6 13 0.67 32 4.7 0.3 1 22 592 610 592 612 0.76 7 13 5.8e-05 0.0028 17.5 0.2 1 20 624 643 624 644 0.97 8 13 0.0038 0.18 11.8 1.0 2 23 653 674 652 674 0.97 9 13 5.8e-05 0.0028 17.5 0.4 2 23 680 701 679 701 0.93 10 13 0.35 17 5.6 2.0 2 23 710 731 709 731 0.95 11 13 9.8e-05 0.0047 16.8 1.8 2 21 738 757 737 758 0.94 12 13 0.00087 0.042 13.8 3.1 1 23 769 791 769 791 0.98 13 13 0.00046 0.022 14.7 2.5 1 23 797 820 797 820 0.98
Sequence Information
- Coding Sequence
- ATGGCCCACATCACCAGTTGTGCGCTTTGTTTAACAGCCGAATCCCAGTGGTTCGTTCGAGTATTTGACGAAGCTAACACGACGCTCAATATGGCACAGATCATATCCAAATATTTATGGTTTGATcTAAAACCGGCCGCCCAGCCGTGCGTGTGCGGTGAATGCTGGAGCAGTGTGCACGATTTTCATCAATTCTACACCAAACTGGAGAACATTCATTGTGACGAGTTAGTTGCAGCGGACAGTACAGAGCAACAACCGCCTGAATTTGAGCTGCCAGAAGAAACCCACCAAAAGGAAGATCAGTTGCAGAAAAGCATCGATGATGGGTATGAAAGGAAGCATGTTCCCACAGTTGAAGTCATTGACAGCAGCGAGAAGAGAAACAACTCAGACAGCGCTGCGAACGAACCGGCGAAACCCCACACGCAAACAGACGCCATGGAAACTATGGACAAAGGAGACAAGAAACATTTCGTGGAGGTGGAAGACTATGCTAGCAATGATGATGACACCGGCGGCTATTGCCCATCGGATGACAACATGCTGGATGGTGATACACTTAACACCGAAGGCAGGGATGAATCTATCGATAAAAAGCCTACGATAAATAACGCAACCGTTGTCGCCATACCTGTGGAACAGCTATCCGTAAAGCGTGGTAGAGGCCGTCCACCAAAGCCAAAGCTGGAACAGCAAAGCGTAGCAGTAGATGCAAAAGAATCTCCAAAGGATACGAGCGCCTCGGAGCAAACACCTGCGAAACGTCCCAGGGGTCGTCCACCAAAGCGAAAGCTGGACATTTCAAGCGCCTCGCCGAACGTTGCTCAGAAAAGTGAAGCACCGCCTGCTGTAATTGAAACGTCACTTGTTGCCACCACGACCGAACCCGTTAAGCGACGCAGAGGTAGACCACCGAAAAATGCCCTTACCGCCGTTGCGGTACATTCTGGCCGTGGGAGGAAAGTTCACTCTGTTACTGGCAACAAACGGTCAACCGCGCTGCGGACGAAAGTGAAGAAAGAAATAATACGTGGACAGGAGCCAACATACACGGATAGCGGTGAGAGCGAATCGGAGAATGGTTCGGATTATGAAGCGGCGAATGCTAAAAAAAAGCCGCCAAAGCGTGAGAAGAGCGACCGGGACGAGCGAATATTTAAGTACGTCGATGAGTTTTGCTGCCATTACTGTGTGGAAAATGTGACGTTCAAGCGGTTCGTCGATGCGGACCGCCACTACAAGCTGGTGCACAACGAGCCGGGCTTTCTGAAGTGTACGAAATGCGAGAAGAAGTGTTTTACGCCCGGCATGTTCGTGAGCCACATGGAGACGCACGAAGATCCGGAAAAGTATAAATGCAACATTTGCGGCAAAATAACGGACTGTAACATCTCGCTCAAGAAGCACATGCGAGTGCATTTGAGTCAGCTGGAAGAGAACCTACCCTTCCCTTGCAGTCGTTGCAAACGAAAGTTCGAATCGGAAGAACAGCGCAACAAGCACGAAAAACTGCACGTGCCCAAACCGCTGGTCAAGCGGGAAAAGGGTCCGGATCTGGAGGTGCTGGCGTTCTACAAACGCATCTACTGCGATGTGTGCGAAGAGCAAAGCCCCGATTCGACCTCGTTCGAGAACTTCTGGGACCTGCGGGTGCACATGGAGCAGGAGCACAACAAGGGAGCGTACCTGAAATGCCCGATCTGCAACAAGAGGAATCTGTACCGGCAGCATCTCATCACGCATATCGATATGCACAATAATCCGGAGAAGTATCGGTGTGAGGTTTGCAAGGAAGTCTATCAAAATCTCGATTCGCACATGGTCAAAGCCCACACACCCACGACTGCGATTCCGGCGGACAGAAAGTACAAGTGTGACCAGTGCGGACGAATGTTCAACTTCCTGGCCAATTTGAAAATGCACATTGACTGTGTTCATGGCTCGAAAGACATCCGTTGCAATGTATGCAATAAGTACTTCAATCTCAAAGCGTTCCAGGTGCACAAGCGAACAGCTCACACCGACCAGATGCTGATGTGCGAACATTGTcccaaaatgttcaaaacacGTGGCGCGCTGGAGGTACACAAGGGCATTCACGATGATACGCTGGTGCAGTTTACGACCTGCAAGCTCTGCAACAAGCAGATACGGCTTACCAACGTGAAGAAGCACATGACCTCGCAGCACTCCGACGATGGGCCGGTCAGCTGCGAAATGTGTGGCAAATCGTTCCGCTCCATGTTCCACATGAAGCGGCACCAGAAGAACACGTGCGAAGCGACGATCGATTCGCGCAAACACAAGTGCGAAATCTGTGGCAAGGGCTTCTGTTTGAAGCTGACGATGATCGAGCACATGacgacacacacgcgcacgaaCAAGTACcagtgtgcgttttgttttaaatcgtTCGGCTACATTTCGAATCTGTACAAGCATCGCAAGAAGGCACATCCGCTCGAATGGCAAGAGATACAGGCACGTCCGGAGGAAAATATTGCTTCGGTTATAGTTGTACGAACGAATTGA
- Protein Sequence
- MAHITSCALCLTAESQWFVRVFDEANTTLNMAQIISKYLWFDLKPAAQPCVCGECWSSVHDFHQFYTKLENIHCDELVAADSTEQQPPEFELPEETHQKEDQLQKSIDDGYERKHVPTVEVIDSSEKRNNSDSAANEPAKPHTQTDAMETMDKGDKKHFVEVEDYASNDDDTGGYCPSDDNMLDGDTLNTEGRDESIDKKPTINNATVVAIPVEQLSVKRGRGRPPKPKLEQQSVAVDAKESPKDTSASEQTPAKRPRGRPPKRKLDISSASPNVAQKSEAPPAVIETSLVATTTEPVKRRRGRPPKNALTAVAVHSGRGRKVHSVTGNKRSTALRTKVKKEIIRGQEPTYTDSGESESENGSDYEAANAKKKPPKREKSDRDERIFKYVDEFCCHYCVENVTFKRFVDADRHYKLVHNEPGFLKCTKCEKKCFTPGMFVSHMETHEDPEKYKCNICGKITDCNISLKKHMRVHLSQLEENLPFPCSRCKRKFESEEQRNKHEKLHVPKPLVKREKGPDLEVLAFYKRIYCDVCEEQSPDSTSFENFWDLRVHMEQEHNKGAYLKCPICNKRNLYRQHLITHIDMHNNPEKYRCEVCKEVYQNLDSHMVKAHTPTTAIPADRKYKCDQCGRMFNFLANLKMHIDCVHGSKDIRCNVCNKYFNLKAFQVHKRTAHTDQMLMCEHCPKMFKTRGALEVHKGIHDDTLVQFTTCKLCNKQIRLTNVKKHMTSQHSDDGPVSCEMCGKSFRSMFHMKRHQKNTCEATIDSRKHKCEICGKGFCLKLTMIEHMTTHTRTNKYQCAFCFKSFGYISNLYKHRKKAHPLEWQEIQARPEENIASVIVVRTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102618; iTF_00093696;
- 90% Identity
- iTF_00102618;
- 80% Identity
- -