Aara002363.1
Basic Information
- Insect
- Anopheles arabiensis
- Gene Symbol
- -
- Assembly
- GCA_016920715.1
- Location
- NC:38550016-38553192[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0028 0.13 12.2 2.8 2 23 424 445 423 445 0.97 2 13 0.00017 0.0079 16.1 2.0 1 23 451 473 451 473 0.99 3 13 0.019 0.93 9.6 2.0 1 23 483 505 483 505 0.97 4 13 1.1 53 4.0 0.0 3 23 530 557 528 557 0.79 5 13 0.41 20 5.4 1.3 2 23 564 585 563 585 0.89 6 13 0.67 32 4.7 0.3 1 22 591 609 591 611 0.76 7 13 5.8e-05 0.0028 17.5 0.2 1 20 623 642 623 643 0.97 8 13 0.0038 0.18 11.8 1.0 2 23 652 673 651 673 0.97 9 13 5.8e-05 0.0028 17.5 0.4 2 23 679 700 678 700 0.93 10 13 0.35 17 5.6 2.0 2 23 709 730 708 730 0.95 11 13 9.8e-05 0.0047 16.8 1.8 2 21 737 756 736 757 0.94 12 13 0.00087 0.042 13.8 3.1 1 23 768 790 768 790 0.98 13 13 0.00046 0.022 14.7 2.5 1 23 796 819 796 819 0.98
Sequence Information
- Coding Sequence
- ATGGCCCACATCACCAGTTGTGCGCTTTGTTTAACAGCCGAATCCCAGTGGTTCGTTCGAGTATTTGACGAAGCTAACACGACGCTCAATATGGCACAGATCATATCCAAATATTTATGGTTTGATcTAAAACCGGCCGCCCAGCCGTGCGTGTGCGGTGAATGCTGGAGCAGTGTGCACGATTTTCATCAATTCTACACCAAACTGGAGAACATTCATTGTGACGAGTTAGTTGCAGCGGACAGTACAGAGCAACAACCGACTGAATTTGAGCTACCAGAAGAAACCCACCAAAAGGAAGATCAGTTGCAGAAAAGTATCGATGATGGGTATGAAAGGAAGCATGTTCCCACAGTTGAAGTCATTGACAGCAGCGAGAAGAGAAACAACTCAGACAGCGCTGCGAACGAACCGGCGAAACCCCACACGCAAACAGACGCCATGGAAACTATGGACAAAGGAGACAAGAAACATTTCGTGGAGGTGGAAGACTATGCTAGCAATGATGATGACACCGGCGGCTATTGCCCATCGGATGACAACATGCTGGATGGTGATACACTTAACACCGAAGGCAGGGATGAATCTATCGATAAAAAGCCTACGATAAATAACGCAACCGTTGTCGCCATACCTGTGGAACAGCTATCCGTAAAGCGTGGTAGAGGCCGTCCACCAAAGCCAAAGCTGGAACAGCAAAGCGTAGCAGTAGATGCAAAAGAATCTCCAAAGGATACGAGCGCCTCGGAGCAAACACCTGCGAAACGTCCCAGGGGTCGTCCACCAAAGCGAAAGCTGGACATTTCAAGCGCCTCGCCGAACGTTGCTCAGAAAAGTGAAGCACCGCCTGCTGTAATTGAAACGTCACTTGTTGCCACCACGACCGAACCCGTTAAGCGACGCAGAGGTAGACCACCGAAAAATGCCCTTACCGCCGTTGCGGTACATTCTGGCCGTGGGAGGAAAGTTCACTCTGTTACTGGCAACAAACGGTCAACCGCGCTGCGGACGAAAGTGAAGAAAGAAATAATACGTGGACAGGAGCCAACATACACGGATAGCGGTGAGAGCGAATCGGAGAATGGTTCGGATTATGAAGCGGCGAATGCTAAAAAAAGCCGCCAAAGCGTGAGAAGAGCGACCGACGAGCGAATATTTAAGTACGTCGATGAGTTTTGCTGCCATTACTGTGTGGAAAATGTGACGTTCAAGCGGTTCGTCGATGCGGACCGCCACTACAAGCTGGTGCACAACGAGCCGGGCTTTCTGAAGTGTACGAAATGCGAGAAGAAGTGTTTTACGCCCGGCATGTTCGTGAGCCACATGGAGACGCACGAAGATCCGGAAAAGTATAAATGCAACATTTGCGGCAAAATAACGGACTGTAACATCTCGCTCAAGAAGCACATGCGAGTGCATTTGAGTCAGCTGGAAGAGAACCTACCCTTCCCTTGCAGTCGTTGCAAACGAAAGTTCGAATCGGAAGAACAGCGCAACAAGCACGAAAAACTGCACGTGCCCAAACCGCTGGTCAAGCGGGAAAAGGGCCCGGATCTGGAGGTGCTGGCGTTCTACAAACGCATCTACTGCGATGTGTGCGAAGAGCAAAGCCCCGATTCGACCTCGTTCGAGAACTTCTGGGACCTGCGGGTGCACATGGAGCAGGAGCACAACAAGGGAGCGTACCTGAAATGCCCGATCTGCAACAAGAGGAATCTGTACCGGCAGCATCTCATCACGCATATCGATATGCACAATAATCCGGAGAAGTATCGGTGTGAGGTTTGCAAGGAAGTCTATCAAAATCTCGATTCGCACATGGTCAAAGCCCACACACCCACGACTGCGATTCCGGCGGACAGAAAGTACAAGTGTGACCAGTGCGGACGAATGTTTAACTTCCTGGCCAATTTGAAAATGCACATTGACTGTGTTCATGGCTCGAAAGACATCCGTTGCAATGTATGCAATAAGTACTTCAATCTCAAAGCGTTCCAGGTGCACAAGCGAACAGCTCACACCGACCAGATGCTGATGTGCGAACATTGCcccaaaatgttcaaaacacGTGGCGCGCTGGAGGTACACAAGGGCATTCACGATGATACGCTGGTGCAGTTTACGACCTGCAAGCTCTGCAACAAGCAGATACGGCTTACCAACGTGAAGAAGCACATGACCTCGCAGCACTCCGACGATGGGCCGGTCAGCTGCGAAATGTGTGGCAAATCGTTCCGCTCCATGTTCCACATGAAGCGGCACCAGAAGAACACGTGCGAAGCGACGATTGATTCGCGCAAACACAAGTGCGAAATCTGTGGCAAGGGCTTCTGTTTGAAGCTGACGATGATCGAACACATGacgacacacacgcgcacgaaCAAGTACcagtgtgcgttttgttttaaatcgtTCGGCTACATTTCGAATCTGTACAAACATCGCAAGAAGGCACATCCGCTCGAATGGCAAGAGATACAGGCACGTCCGGAGGAAAATATTGCTTCGGTTATAGTTGTACGAACGAATTGA
- Protein Sequence
- MAHITSCALCLTAESQWFVRVFDEANTTLNMAQIISKYLWFDLKPAAQPCVCGECWSSVHDFHQFYTKLENIHCDELVAADSTEQQPTEFELPEETHQKEDQLQKSIDDGYERKHVPTVEVIDSSEKRNNSDSAANEPAKPHTQTDAMETMDKGDKKHFVEVEDYASNDDDTGGYCPSDDNMLDGDTLNTEGRDESIDKKPTINNATVVAIPVEQLSVKRGRGRPPKPKLEQQSVAVDAKESPKDTSASEQTPAKRPRGRPPKRKLDISSASPNVAQKSEAPPAVIETSLVATTTEPVKRRRGRPPKNALTAVAVHSGRGRKVHSVTGNKRSTALRTKVKKEIIRGQEPTYTDSGESESENGSDYEAANAKKSRQSVRRATDERIFKYVDEFCCHYCVENVTFKRFVDADRHYKLVHNEPGFLKCTKCEKKCFTPGMFVSHMETHEDPEKYKCNICGKITDCNISLKKHMRVHLSQLEENLPFPCSRCKRKFESEEQRNKHEKLHVPKPLVKREKGPDLEVLAFYKRIYCDVCEEQSPDSTSFENFWDLRVHMEQEHNKGAYLKCPICNKRNLYRQHLITHIDMHNNPEKYRCEVCKEVYQNLDSHMVKAHTPTTAIPADRKYKCDQCGRMFNFLANLKMHIDCVHGSKDIRCNVCNKYFNLKAFQVHKRTAHTDQMLMCEHCPKMFKTRGALEVHKGIHDDTLVQFTTCKLCNKQIRLTNVKKHMTSQHSDDGPVSCEMCGKSFRSMFHMKRHQKNTCEATIDSRKHKCEICGKGFCLKLTMIEHMTTHTRTNKYQCAFCFKSFGYISNLYKHRKKAHPLEWQEIQARPEENIASVIVVRTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00093697;
- 90% Identity
- iTF_00102618;
- 80% Identity
- -