Basic Information

Gene Symbol
Kdm5
Assembly
GCA_008817895.1
Location
VTWG01003079.1:16051-21109[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 9.1e-26 2.2e-22 78.9 0.0 2 89 199 282 198 282 0.94
2 2 2.9 6.9e+03 -2.8 0.0 6 41 986 1023 982 1034 0.79

Sequence Information

Coding Sequence
ATGAAAAGTAAGTCCAAAAACTCTTTGACGAACGGGAGTGGCAGTAGcggtagtagcagtagtggcagtggcagtgaTAATTACGCCAATGGTAGCAGCAACTATGGGCCCGCCGGGGCATCGATGACAGGCACAGCGGGGAACGGTGGTGCCTCCGCTGGGACCATGAATggaggcagcagcagacacCCACAATCCTCTTCCAGCCTGAGTGCTGAGAATATTCCATGTCGAACTATTTCCGCTACCGATATCAGAGTGGCGAGTGTGGATGCGGATTGTCTagaccagcagcagcctcaGCAACCGATGAACCATCACAATAATCCGCACCGACCACATATATCGCTGGATAAGTGCGatgattttcaattcaatgttcCGCCGGAAGCTCCTGTTTTCGAGCCGTCGGAGGAAGATTTCAAAAATCCCCTCGTGTACATCAACAAAATTCGTCCGACCGCAGAAAAGTTCGGAATTTGCAAAATTCGTCCACCGAGCTCCTGGCAGCCTCCCTTCACTGTGGATGTAGAAAAGCTGACCTTTACGCCACGCATTCAGCGGTTGAACGAACTGGAAGCGGAAACACGCATTAAACTTAACTTTCTCGATCAGATTGCCAAGTTTTGCGAGTTGCAAGGGACAACTCTCAAGATACCGATGGTGGAAAGAAAGCCGCTAGATCTGTACACCCTACATAAGATCGTTAATCAAGAAGGAGGCCTGGAAGTGGTTACAAAGGAGCGCAAATGGTCCAAAGTAGCATGTCGTATGGGCTACCAGCAAGGCAAGAGCGTTGGATCAAATCTGCGAACTCACTACGACCGATTGCTGTATCCGTTTGATGTGTATCGCTCGGGCAAGGTGGTGGATTTGGCAAACATTGACCCAGAGCCATCCGAAGACTGCGAGTATGAGCCGCACTGTATTGAGTCACGTCAACAGGTTCAACCTCCGATGACGGCAGCTCGTCGCTCCCAGCGGTTTGCCCAGCAacagaacaacagcaaaccctcATCGACCACCGGAAGCAGTGCCGGTGGAAGTGTGCGTGGTTCATCCGACGAGATGTCTCCGAGCAAGAAAGAGTTGCGACACAGAAGCATGCTTGAGTTTGCGAGTAAATTAGCGGCCGCCGCCCGAGACCAAGCGGCAACCAACGGCGGTGCGTcgaaggaggaaaaagttGGAGTCGGTGGAACGCACGGTTACGATCCGATGGCAAAGTACATTTGTCATATGTGCAATCGTGGTGATGTCGAAGAATCGATGCTACTGTGCGACGGATGCGATGCTTCGTATCACACGTTCTGTCTAATGCCGCCGCTACAAGACATTCCGAAGGGAGACTGGCGCTGTCCCAAGTGCATCGTGGAGGAACACTCAAAACCGGTGGAAGCGTTTGGGTTTGAGCAGGCACAACGGGAGTACACACTGCAGCAGTTCGGCGAGATGGCTGATCAATTCAAATCGAACTACTTTAACATGCCGGTTCATCTCGTACCGACCGAGCTGGTGGAGAGGGAATTTTGGCGCATCGTATCATCTATTGACGAAGACGTGACGGTAGAGTATGGGGCCGACTTGCACACGATGGACCATGGCAGTGGCTTTCCTACCAAGTCGTCGTCTCTTTCGTCCACTGATCAGGAGTATGCAGAGTCGAGCTGGAACCTCAATAATTTGCCCGTGCTTGACGAATCAATCCTTGGACACATTAATGCCGATATCAGCGGCATGAAGGTACCATGGATGTATGTTGGAATGTGCTTTGCCACGTTCTGTTGGCATAATGAGGACCACTGGAGTTACTCCATTAACTATTTGCACTGGGGAGAACCGAAAACATGGTACGGTGTGCCCGGCAGCCGAGCAGAAGATTTTGAGCTAGCGATGAAATCGGCTGCCCCGGAGTTGTTCCATTCGCAGCCGGATTTGCTGCACCAGCTGGTTACAATTATGAATCCCAACATTCTGATGAACGCCAACGTCCCTGTTTACCGGACGGATCAGCACGCGGGCGAATTTGTCGTAACATTCCCGCGTGCGTATCACGCCGGCTTTAACCAAGGATACAACTTCGCCGAGGCAGTCAATTTTGCGCCGGCTGATTGGATGAAGATGGGCAGAGAGTGCGTCAATCACTATTCAAAGTTGCGGCGGTACTGCGTATTTTCTCATGATGAGCTCGTTTGCAAGATGGCACTGGAACCAGACAGGCTGAATTTGGGTATTGCAACAGCATGCTATATCGATATGGCAGAGATGGTTGACACCGAGAAGAAACTACGAAAAAATCTTCTAGAATGGGGTGTATCGAATGCTGAACGGGAGGCATTTGAGCTGCTGACGGACGACGCTAGACAATGCGAGATTTGCAAAACTACCTGCTTCCTTTCGGCAGTGAATTGTAAATGCACCAAGAACCTGGCTTGTCTGCGCCATTTTGCTGAGCTGTGCGAATGCCCCCCGGAAAACCACACCCTCAAGTATCGGTACACACTGGACGAGTTGCCGTTGATGGTGCAAAAGTTGAAGGTAAAGGCAGAATCGTTTGAGAAATGGTTGTTCCGTGTGCGAGACGTTCTTGATCCATCGGTTGCGAGTAGCATTACACTCGAGGAATTGCAAAGCATAGCGCATGAAGCCGAAAGTCAAAAGTTCCCCAACAGCGTTATTCTGGAGCGTTTAAATCTGTCAATATTGGAGGCCCAGAAGTGCATTACGGTCATTCAGCAGCTTGATATTAATAAAATACGAACGCGCACGCGAAATTCTTTAGAGTGTGCGAAATACAAGCTGTCGATGGATGAGCTGGAGTTGTTCATCAACGAAATCAACAATCTCCGATGTGTAATTCGAGAGGGTGACAGTGTACGAGAGCTGCAGCGCATCGGGCAAGAATGGCTGCGCCAGGCAGATAAGGCATTGAAATTGCGCTTTAAGGATACGAATGTGCAGCAGCTGAATCAGCTGATCGAAGAAGGAAATGCGCTATGCATTGAGTTGCCGCAAATTGCGGAGTTGCGGGATCGACTTACGCAGTACAAATGGTATCGAGAGGTGCGAACCTTACGGGAAAATACGGTCGATCGCTTGTCGCTGGAGGAAATTAAAAAGCTCATCAATGAAGGAATGCGAATACTACCGCACACAGTATTAGAGAAGGAACTGTCACAGTTGCACGGTATTATGTTGCAGATTGTGGATTGGGAGCAATCTGCTAACCAATGCTTCAAAACGGAAACGCAGCATAAGATCAGCGAAATTGATAGTCTTCTAGAGCGTGCGCAAAATATCGAGGAGTTCTTGCCATTGGCCGGTCAGCTGAAAGACGCGTTGCATAAATCGAAGGAATGGTTACATGCGATCGAAACGCTAGAAAGTAGCAAAAATTATAACTTTTTCCACACACTCCAAAATCTGGCCAACCGCGCCAAGCTGCTGCCAGTAGAAGTGGAAAGCAAGCTGCTGTGTGAAACAATTTTCGGTACAACAACTGCGGGCGGTGGCTGCTACAATCGAAATGGTGGTCAGATGCTACTGTTCAACTCAATGGGTTTCATCGGGGCTAGTGGCGACGAGTGGCGCAATAAATCGTCTTTGCCAGCATCGTCGCAGAAGCGAAAAAGAAATGGTTCAATCTCCAATCTGGACGATCCGGTAATACCTGGTAGTGGAATGGAAAcaatcatgaaaaaaataaaggaggACAGTAGCATCGCCGAACAGGATAAGAGATTGCTGCGAGCTAAGCTGCTATTGGACTGGAACGAGTCGGATGGTGGCATGGGAACCAGCAGCGATAAAAACATGCTCGGACGCTACGACAAtatgaagcagcagcaggaaaatcGTTTGAATTGTAGCAGTGGTTGCGATGTGGTTTATCATTGCGCCAAGTGCTACGAGATGGTGGCCAAAGCGAACGTGTTACGGAAGTATCGGCAtaagcagcatcatcatcattgccggCATCATGAAAGGCACAGCAAGGTAAAACAGGAGCAGAATCATCAGCAGCacagtaatagtagtagtttGTCATCTATGGAACAATTGTTGCAAATGAAAACTTTAAGCGAGGATGATTTTCTTCCCGAGAAGGAAGGAGCAAGTGAAAGGACAACAGCTGAAGGAGGAAGCAGTTTTGACGATTTTTCCTTTAAATTTGGCGAACACGACGAAGCGGAAGACGAGCTAGACGACGAAGAGGCGGCAGATGAGGTTAAAGCAGAAGATGAGGACGAGGATGAGGAAGAAGCTGCCTGTCTTGGACCGCCGGGACGGAATGGGTGTCATGGTTGCAAACCGCCGGACGAAAAGGAACGGCAACCAAGTGCGTTGTTGCCGGCATGCACAAGCGCTAGAATAAAAGAGGAACCGCTAGACGATGTGGAGCACCTCGATGAAGAGGAAAGGGAGATGCGACACAGCTCTAAAGTCCCTGGTGGAGAAGGGGCCGTGACCGGTGCAACTAAAACCATCTGTCCCGAGAGCACTAGTCAACCGTTGGCAGTGGTGTCTGCAAATGGCAAAAGTCATGCCAACGGTGCCAACGGCGTTAGTACCTCTACGAACGCTTCTTATCCACCGCACGACCGGCAGCGACAAGAACACAACCCACAGAGCAATCTAACAAGCTTATGA
Protein Sequence
MKSKSKNSLTNGSGSSGSSSSGSGSDNYANGSSNYGPAGASMTGTAGNGGASAGTMNGGSSRHPQSSSSLSAENIPCRTISATDIRVASVDADCLDQQQPQQPMNHHNNPHRPHISLDKCDDFQFNVPPEAPVFEPSEEDFKNPLVYINKIRPTAEKFGICKIRPPSSWQPPFTVDVEKLTFTPRIQRLNELEAETRIKLNFLDQIAKFCELQGTTLKIPMVERKPLDLYTLHKIVNQEGGLEVVTKERKWSKVACRMGYQQGKSVGSNLRTHYDRLLYPFDVYRSGKVVDLANIDPEPSEDCEYEPHCIESRQQVQPPMTAARRSQRFAQQQNNSKPSSTTGSSAGGSVRGSSDEMSPSKKELRHRSMLEFASKLAAAARDQAATNGGASKEEKVGVGGTHGYDPMAKYICHMCNRGDVEESMLLCDGCDASYHTFCLMPPLQDIPKGDWRCPKCIVEEHSKPVEAFGFEQAQREYTLQQFGEMADQFKSNYFNMPVHLVPTELVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSSLSSTDQEYAESSWNLNNLPVLDESILGHINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPGSRAEDFELAMKSAAPELFHSQPDLLHQLVTIMNPNILMNANVPVYRTDQHAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPADWMKMGRECVNHYSKLRRYCVFSHDELVCKMALEPDRLNLGIATACYIDMAEMVDTEKKLRKNLLEWGVSNAEREAFELLTDDARQCEICKTTCFLSAVNCKCTKNLACLRHFAELCECPPENHTLKYRYTLDELPLMVQKLKVKAESFEKWLFRVRDVLDPSVASSITLEELQSIAHEAESQKFPNSVILERLNLSILEAQKCITVIQQLDINKIRTRTRNSLECAKYKLSMDELELFINEINNLRCVIREGDSVRELQRIGQEWLRQADKALKLRFKDTNVQQLNQLIEEGNALCIELPQIAELRDRLTQYKWYREVRTLRENTVDRLSLEEIKKLINEGMRILPHTVLEKELSQLHGIMLQIVDWEQSANQCFKTETQHKISEIDSLLERAQNIEEFLPLAGQLKDALHKSKEWLHAIETLESSKNYNFFHTLQNLANRAKLLPVEVESKLLCETIFGTTTAGGGCYNRNGGQMLLFNSMGFIGASGDEWRNKSSLPASSQKRKRNGSISNLDDPVIPGSGMETIMKKIKEDSSIAEQDKRLLRAKLLLDWNESDGGMGTSSDKNMLGRYDNMKQQQENRLNCSSGCDVVYHCAKCYEMVAKANVLRKYRHKQHHHHCRHHERHSKVKQEQNHQQHSNSSSLSSMEQLLQMKTLSEDDFLPEKEGASERTTAEGGSSFDDFSFKFGEHDEAEDELDDEEAADEVKAEDEDEDEEEAACLGPPGRNGCHGCKPPDEKERQPSALLPACTSARIKEEPLDDVEHLDEEEREMRHSSKVPGGEGAVTGATKTICPESTSQPLAVVSANGKSHANGANGVSTSTNASYPPHDRQRQEHNPQSNLTSL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00106232;
90% Identity
iTF_00106804;
80% Identity
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