Afon009277.1
Basic Information
- Insect
- Anopheles fontenillei
- Gene Symbol
- Rfx2
- Assembly
- GCA_008817895.1
- Location
- VTWG01001099.1:3729-10771[-]
Transcription Factor Domain
- TF Family
- RFX
- Domain
- RFX domain
- PFAM
- PF02257
- TF Group
- Basic Domians group
- Description
- RFX is a regulatory factor which binds to the X box of MHC class II genes and is essential for their expression. The DNA-binding domain of RFX is the central domain of the protein and binds ssDNA as either a monomer or homodimer [1]. It recognize X-boxes (DNA of the sequence 5'-GTNRCC(0-3N)RGYAAC-3', where N is any nucleotide, R is a purine and Y is a pyrimidine) using a highly conserved 76-residue DNA-binding domain (DBD) [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.5e-37 5.4e-33 113.1 0.0 3 78 134 209 132 210 0.97
Sequence Information
- Coding Sequence
- ATGTACAACACTTCCGGCCAGGGACAGACGCAAATGACCTATCCCGTGTACACCGTTGGGGATTACGGCACAaatgggcagcagcagcaacagcagtactACACCACGGGTGGAACCTACGGTACAGCGGGTGCCGGCACGGGAAGCACTCACACCGACACTACCGGCAACGGCACCAGCAACGGTACCGGCACCACCGGAACTGGCCCGAACGGCGTCAATGGCAGCGTATCGTCCGGCAACGGCGGTTCCGCTGCCGGCAACGCTAATCAGCAGCAGTACATTGTGCCCGTGGATGAGTCGGACGTAGCGTCCTACTTGCACGCGCACCAAACGGCGTCCGTTGGTCAGGAGCTCGACTCCGCGCCCAATATGACCCACGCGGCCCGCGTTCTGCCCGCCACGGTGAGCTGGCTGATGGAGAACTACGAAACGGCGGACGGTGTCAGCTTGCCGCGATCGACACTGTACAACCACTACATGTGGCACTGCAACGAGAACAAGCTGGACGCGGTGAATGCGGCCAGCTTCGGCAAACTGATCCGTTCGGTGTTTAGCGGGCTGCGGACGCGCCGGCTGGGCACGCGGGGCAACAGCAAGTACCACTACTACGGCATTCGCATCAAACCGACGTCCCCTCTGGTGCATGCGATCGAGTGTAAGCCTCAACACGGTTCGGGCGGTGTTGGCGGGCTCGGCGGGATGGTTGGTCACCATCAGCAGCTGGGTGGAAGCAACGGACTCGGTGGCGGAAATGGAACGGGCGGCAACAATGGGATGCATGGCCACGCCGGAGGCGGCAATCACGCGAACGGACTGCATGGCAGCAATGGCAGTTCCATGGCgcacggcggtggtggtggtggtggtggcggtggccatTTACAGCAAGGTGTGGTTGGGGGTGCAAATGGAGGCGGTGGAAGTGGAGGCGGCCATGGTATGGCGATGCACCATGGTCGTGGTAAGAAGAACAGCTTCAAGGCGGAAATGCCCGAGTCCTGTGCGCAGTATCTGGGCGATCCGAACGGTGCCATACCGCAGTTTCCGATCATAGACATGATTCACCCCCTGCCGGACGATATCACAATGGAGGACGTGGACACGCTGCGCTCGATCTACCGCGAGCACTGCGAGGCGTTCCTGGATGCTATCCTGAACCTGGACTTCAACATGATCGAATCGCTGTGGCGCGAGTTTTGGCGCGccgagaacaacaacaacaacggggACGAGTGCGAGGAGGAAAAGTATCTCAGCAAGCAGAAGCTGTACCTGCTGACGCAGTGCGAACCGGTGCAGGAGTTTGTCAAGCACGTCGACCTCCAGTTCTACCAGAGCATGGTGGACGTGCTGATCCCGGACGTGCTGCGACCGATACCGACCGGGCTGACCCAGGCGATTCGCAACTTTGCGAAGAACCTCGAGAACTGGCTAACGTCGGCGATGGGCGGCTGCCCGGAGCCGATCGTCGCGATAAAGCTGTCGGCGGTGGCCGCCTTTGGGCAGACGCTGCGCCGCTACACCTCGCTCAACCATCTGGCGCAGGCGGCCCGGGCCGTGCTGCAGAACGGCACGCAGATCGCCCAGATGCTGAGCGATCTGAACCGGGTCGACTTCCGCAACGTGCAGGAGCAAGCCTCCTGGATCTGCCAGTGCGATACGGCGGTGGTGCAGCGGCTCGAGAACGACTTCAAGGCcgccctgcagcagcagaacacgCTCGAGCAGTGGGCGGGCTGGCTGCAGAACGTGGTCGATGACGCGCTGCAGGAGTACCGGGGCAAGCCGAGCTTCGTGCATGCCGCCAGACAGTTTCTGCTCAAGTGGAGCTTCTACAGCTCGATGGTGATCCGCGATCTGACACTCCGGTCCGCCGGCAGCTTCGGCAGCTTTCACCTCATACGGCTGCTGTACGACGAGTACATGTTCTTCATCATCGAGCATAAGGTGGCGAAGGCGACCAACACTACGCCGATTGCGGTTATGGGAGAGAAAATCAACTCGCGTCCCGTACAAGACGATCTGGACCGGATGCTCTACACCAGCGAGTACGGCATGGTCAACGTGAAGCTGGAGCCGAGCGCGAAACGGATGCGCAGTTAG
- Protein Sequence
- MYNTSGQGQTQMTYPVYTVGDYGTNGQQQQQQYYTTGGTYGTAGAGTGSTHTDTTGNGTSNGTGTTGTGPNGVNGSVSSGNGGSAAGNANQQQYIVPVDESDVASYLHAHQTASVGQELDSAPNMTHAARVLPATVSWLMENYETADGVSLPRSTLYNHYMWHCNENKLDAVNAASFGKLIRSVFSGLRTRRLGTRGNSKYHYYGIRIKPTSPLVHAIECKPQHGSGGVGGLGGMVGHHQQLGGSNGLGGGNGTGGNNGMHGHAGGGNHANGLHGSNGSSMAHGGGGGGGGGGHLQQGVVGGANGGGGSGGGHGMAMHHGRGKKNSFKAEMPESCAQYLGDPNGAIPQFPIIDMIHPLPDDITMEDVDTLRSIYREHCEAFLDAILNLDFNMIESLWREFWRAENNNNNGDECEEEKYLSKQKLYLLTQCEPVQEFVKHVDLQFYQSMVDVLIPDVLRPIPTGLTQAIRNFAKNLENWLTSAMGGCPEPIVAIKLSAVAAFGQTLRRYTSLNHLAQAARAVLQNGTQIAQMLSDLNRVDFRNVQEQASWICQCDTAVVQRLENDFKAALQQQNTLEQWAGWLQNVVDDALQEYRGKPSFVHAARQFLLKWSFYSSMVIRDLTLRSAGSFGSFHLIRLLYDEYMFFIIEHKVAKATNTTPIAVMGEKINSRPVQDDLDRMLYTSEYGMVNVKLEPSAKRMRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00099434; iTF_00104140; iTF_00102126; iTF_00095428; iTF_00097521; iTF_00094898; iTF_00106201; iTF_00102813; iTF_00100065; iTF_00108124;
- 90% Identity
- iTF_00104140;
- 80% Identity
- -