Basic Information

Insect: Anopheles farauti
Gene Symbol: -
Assembly: GCA_000473445.2
Location: KI915041.1:2814085-2817565[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.94 3e+03 -2.0 0.0 27 46 193 212 189 216 0.84

2 11 0.3 9.6e+02 -0.4 0.1 26 32 346 352 333 363 0.76

3 11 0.27 8.7e+02 -0.3 0.0 26 47 421 442 415 447 0.81

4 11 0.0026 8.5 6.1 0.0 21 46 444 469 439 475 0.85

5 11 0.00014 0.44 10.3 0.0 21 45 472 496 468 503 0.87

6 11 0.0037 12 5.7 0.1 21 45 500 524 496 529 0.89

7 11 0.14 4.6e+02 0.6 0.1 21 46 552 577 539 580 0.82

8 11 3e-05 0.095 12.4 0.1 12 52 572 612 568 613 0.87

9 11 0.024 78 3.0 0.0 22 45 638 661 635 668 0.84

10 11 0.0013 4.2 7.1 0.1 21 48 665 692 661 696 0.86

11 11 0.00024 0.79 9.4 0.0 21 45 693 717 691 723 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.94	3e+03	-2.0	0.0	27	46	193	212	189	216	0.84
2	11	0.3	9.6e+02	-0.4	0.1	26	32	346	352	333	363	0.76
3	11	0.27	8.7e+02	-0.3	0.0	26	47	421	442	415	447	0.81
4	11	0.0026	8.5	6.1	0.0	21	46	444	469	439	475	0.85
5	11	0.00014	0.44	10.3	0.0	21	45	472	496	468	503	0.87
6	11	0.0037	12	5.7	0.1	21	45	500	524	496	529	0.89
7	11	0.14	4.6e+02	0.6	0.1	21	46	552	577	539	580	0.82
8	11	3e-05	0.095	12.4	0.1	12	52	572	612	568	613	0.87
9	11	0.024	78	3.0	0.0	22	45	638	661	635	668	0.84
10	11	0.0013	4.2	7.1	0.1	21	48	665	692	661	696	0.86
11	11	0.00024	0.79	9.4	0.0	21	45	693	717	691	723	0.91

Sequence Information

Coding Sequence: ATGCTTGGCAAGTATGGCGAGGCTGCGAGTTCCGGCTCGATGAAAAATTTGGAAAATGGTTTACGGGACCGTGTGCTGTACCACCAGAACATGCTGAGCATGAACCTGACTACCGATTTCTACCACAATCCATTCCTTTCGGCCGGTGGCGGTGGTGTTGTTGGTAGTAGCAGCGCCGGCACAGCGCCCGGCTCGGCAGCTATGGCCCAGCCAGTGCAGAAGATTCAACTCCACACACAACAGCACACAACCGCAGCAGGAGCGGCACCCGCCCTAACGTTGTACCAGTGTCAGCTCTGCCAGAAGTGTTTCATCACGAACGCGCTCTTAACGCAGCACATGAAAATGACGCACGAAAACAACGGGTTCGTGGCGCGCGAAGGTACCAATTACGTCCAGCAGCAGCAGCAGCAAACGACCGCACCGTCCACGGTAGCCGCGGTGCCAGTCGCGAGTGGCAGCAAAACTAGTCCTACCATCCTTTCGCAGCACATCATCAAGACCGAGTACGGCGGCGGCACGTCCGCCGGTCACACGATGGGACAATTTTCCTACGGCATCGCGAAACAGTTCGAGTGTCAGATCTGCCACAAATCGTTCATGACGCAGGTGAACCTCAATCTGCACATGAAAATCCACGACATGACCGAGCAGAAGACGGCCCCGATGTACCTGCAGATGGCGAACGCGGGCTATCAGGCGCACGATCAGCACCCGCCGATGGCAGTACCGGGCGGTGGCCCCCCGGACGGCGTGTGCCAGATATGCCACAAAACGTTCAGCACGGCCGATCAGTTTGCGGCGCACATGAAAATCCACGAAAATGAGTTTAAAAATCGGGCCCTCTATCATTCGGGCGGTGGGGCAGCCGCGAATGGGGCTGCGGACGGGAGCGGTGCGGTGACGCCGCTTTCGACGACCGGCAACGGTACGTCGGACCATTTCTATGCCGCACCAGCGCATGCGAGCGCACATCAGCTACCGTCGCACGCATCGCACCACCCACCGCCCCATCTCGACGCGAGCAAGGGCCACCGGTGCCCGATATGCCACAAAATGTCCAACAACATCATCGAGCACATCAAACAGCACGAGGGACAGCTCACGATGGGTGGCGGTGGTGGTAGCGGATCCGGACCGGATGTTGCCGGTGGTTCTCCGCCGGGGTCGGGCTATCAGCAGCAGCCGCATCCGGCGGAAGATTCCCAGTCCTCGCTGGAGGAGGAAAGCGACGGTGGCGACGGTAGCGCCCGCAAGCACGAGTGTCTGATATGCCACAAAAAGTTCTCGAGCTCGGGCAACCTGGCCATCCACATACGCGTGCACTCGGGCGAAAAACCGTTCAAGTGTAGCGTGTGCGGCAAGGGTTTCATCCAGTCGAACAACCTGGCGACGCACATGAAAACGCACACGGGCGAAAAGCCGTACGCGTGCACGATCTGTGGCAAAAACTTCAGCCAGTCGAACAACCTGAAAACGCACATCCGGACGCACACGGGCGAAAAACCGTACGCGTGCACGATCTGCGGCAAGCGGTTCAACCAGAAGAACAACCTCACGACGCACATGCGGACGCACCAGCTCGTGTGCATGGTGTGCGGCGTGCAGTTCATGCACCCGTCCGATCTGGCCAACCACATGAAGTTCCACAACGACGAGAAACCGTTCATCTGCTCCGTCTGCAACAAGGTGTACCTCAACCTGGACGAGCTGACCGAGCACATGAAGAAGACGCACCAGCAGGTGAAACCGTACCGCTGCCACATCTGCGACAAAACGTTCACGCAGTCGAACAACCTGAAGACGCACATCAAGACGCACATCTTCCAGGACCCGTACAAGTGTCAGATGTGCTCGCGCTCGTTCCAGAAGGAGGACGACTACTCGCAGCACATGCTGGTGCACACGGCCGACAAGCCGTACGAGTGTACGTACTGCGGGAAGCGCTTCATCCAGTCGAACAACCTCAAGACCCACGTCCGGACGCACACGGGCGAAAAGCCGTACCGCTGCACAATCTGCTCGAAGAACTTCAACCAGAAGAACAATCTCAACACGCACATGCGCATCCACACCGGCGAAAAGCCGTTCGAGTGTACGATCTGCGACAAGCGGTTCAACCAGTCGAACAACCTGAACAAACACATCAAAACGCACGGCCAGGAGAAGGAGCAGCAGCACGCGAGTTGA
Protein Sequence: MLGKYGEAASSGSMKNLENGLRDRVLYHQNMLSMNLTTDFYHNPFLSAGGGGVVGSSSAGTAPGSAAMAQPVQKIQLHTQQHTTAAGAAPALTLYQCQLCQKCFITNALLTQHMKMTHENNGFVAREGTNYVQQQQQQTTAPSTVAAVPVASGSKTSPTILSQHIIKTEYGGGTSAGHTMGQFSYGIAKQFECQICHKSFMTQVNLNLHMKIHDMTEQKTAPMYLQMANAGYQAHDQHPPMAVPGGGPPDGVCQICHKTFSTADQFAAHMKIHENEFKNRALYHSGGGAAANGAADGSGAVTPLSTTGNGTSDHFYAAPAHASAHQLPSHASHHPPPHLDASKGHRCPICHKMSNNIIEHIKQHEGQLTMGGGGGSGSGPDVAGGSPPGSGYQQQPHPAEDSQSSLEEESDGGDGSARKHECLICHKKFSSSGNLAIHIRVHSGEKPFKCSVCGKGFIQSNNLATHMKTHTGEKPYACTICGKNFSQSNNLKTHIRTHTGEKPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFMHPSDLANHMKFHNDEKPFICSVCNKVYLNLDELTEHMKKTHQQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQKEDDYSQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYRCTICSKNFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKEQQHAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00100442; iTF_00099136; iTF_00099366;
90% Identity: iTF_00100442;
80% Identity: iTF_00100442;