Basic Information

Gene Symbol
Kdm5
Assembly
GCA_000349105.1
Location
KB671214:30503-37572[-]

Transcription Factor Domain

TF Family
ARID
Domain
ARID domain
PFAM
PF01388
TF Group
Helix-turn-helix
Description
This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 1.4e-25 2.4e-22 78.6 0.0 2 89 213 296 212 296 0.94
2 2 1.5 2.5e+03 -1.7 0.0 5 41 999 1037 996 1058 0.81

Sequence Information

Coding Sequence
ATGAAAAGTAAGTCTAGAAATTCTTTGACGAACGGGAGTAGCGGCGGTGGCAGCGGCAGCAGTAGTAGTGGCAGTGGCAGTGATAATTACGCCAATGGCAGTAGCCATGGGCCCAACGGGGCAACGATGACGGGCGCATTGGGTGCGAGTGGTGCTTCCGTTGGGACGATGAACGGCGGCGGCAGACACCTACAATCCTCTTCCACCATGAGTGCTGAAAATTCTCCCAGTCGATCTAATATTTCCGCTACCGATGCCGGTACATCGGGTCTGGATGGCACGGATTGTCCAGACAATCAGCAACAGTCGCAGCAACCGATGAACCATCAAAATAATCGCAATCATTCGTGTCAGCAGCCAAGGCAGGGAGGAAACCGCCCTCATATATCCTTGGATAAGTGTGATGATTTTCAATTCAATGTTCCGCCGGAAGCGCCTGTTTTCGAGCCATCGGAGGAAGACTTTAAAAATCCGCTTGTGTATATCAATAAAATACGCCCGACCGCTGAGAAGTACGGAATCTGCAAAATTCGGCCACCTAGTTCCTGGCAGCCTCCCTTCACCGTGGATGTAGAAAAGCTGACCTTTACGCCACGCATACAGCGGCTGAACGAATTGGAAGCGGAAACGCGCATTAAATTGAACTTTCTTGATCAGATTGCAAAGTTTTGCGAGCTGCAGGGAACAACACTGAAAATCCCGATGGTAGAAAGAAAGCCACTTGATCTGTACACCCTGCACAAGATTGTGAATCAGGAGGGTGGTCTGGAGGTGGTGACAAAGGAGCGCAAATGGTCAAAAGTAGCATGCCGCATGGGCTACCAGCAGGGCAAGAGCGTTGGATCAAATTTACGGGCGCACTACGACCGCCTGCTTTATCCGTTCGATGTGTATCGCTCGGGAAAGGTGATAGATTTGGCAAACATTGATCCGGAGCCGTCGGAAGACTGTGAGTATGAACCGCATTGCATTGAGTCGCGTCAGCAGGTTCAACCTCCGATGACGGCAGCACGTCGTTCACAGCGGTTTGCTCAGCAACAGAACAGCAAACCGCCCTCGACCACCGGTAGTAGTGCCGGTGGAAGTGTACGTGGTTCATCGGATGAAATGTCTCCGGGCAAGAAGGAACTGCGACACCGAAGCATGCTGGAGTTGGCGAGTAAGTTGGCTGCAGCGGCTCGAGATCAAGCCGCAACCAATGGCAGTGCGTCGAAGGAGGAAAAGAGTGGTGGTGGCGGAGCGCATGGGTACGATCCGATGGCAAAGTACATCTGCCACATGTGCAACCGTGGCGATGTGGAAGAGTCGATGCTACTTTGTGACGGATGTGATGCTTCGTACCACACGTTCTGTCTAATGCCCCCGCTGCAAGACATTCCGAAGGGAGACTGGCGATGTCCGAAGTGCATTGTGGAGGAAAACTCGAAGCCGGTGGAAGCGTTCGGGTTTGAGCAGGCGCAACGTGAGTACACGCTGCAGCAGTTTGGCGAGATGGCCGATCAGTTCAAATCGAACTATTTTAAAATGCCCGTTCATCTTGTGCCGACGGAATTGGTTGAGAGGGAATTTTGGCGCATCGTGTCATCGATTGACGAAGACGTGACGGTTGAATATGGGGCGGATTTGCACACAATGGATCATGGTAGTGGCTTTCCCACCAAATCTTCGCCGTATCTGTCGTCGAGCGATCAGGAGTATGCAGAGTCGAGCTGGAACCTCAACAATCTGCCCGTACTGGACGAATCGATCCTTGGCCACATTAACGCCGACATCAGCGGCATGAAGGTGCCGTGGATGTACGTTGGAATGTGTTTCGCCACCTTTTGCTGGCACAATGAGGACCACTGGAGCTACTCGATCAACTATCTGCACTGGGGCGAACCGAAAACATGGTACGGAGTGCCGGGCAGCAGGGCGGAAGAATTTGAGCTGGCGATGAAATCTGCCGCCCCCGAGCTATTCCATTCGCAGCCGGACTTGCTGCACCAGCTGGTGACGATTATGAATCCCAACATTCTGATGAACGCCAACGTGCCCGTCTACCGGACGGACCAGCATGCGGGCGAATTTGTCGTAACATTCCCGCGTGCCTACCACGCCGGTTTTAACCAGGGATACAACTTTGCCGAGGCGGTAAATTTTGCACCGGCCGATTGGATGAAGATGGGTCGAGAATGCGTCAATCATTATTCCAAGCTACGGCGGTACTGTGTGTTTTCTCACGATGAGCTCGTCTGCAAGATGGCACTAGAGCCCGATAGGCTAAATTTGGGAATTGCAACTGCATGCTACATCGACATGGCCGAGATGGTTGACACGGAGAAAAAGCTGCGAAAAAATCTTTTGGAATGGGGTGTGTCAAATGCTGAACGGGAAGCATTTGAGCTGCTGACAGACGACGCTAGGCAATGCGAGATTTGCAAAACTACATGCTTCCTCTCAGCGGTGAATTGTAAGTGCACCAAAAATCTGGCCTGTCTGCGCCACTTTGCCGAGTTGTGCGAATGCCCTCCGGAAAATCACACACTTAAGTATCGCTACACGCTAGACGAGCTGCCGTTGATGGTGCAAAAGCTCAAAGTGAAGGCAGAATCGTTTGAGAAGTGGTTGTTCCGTGTGCGCGATGTTCTTGATCCATCGGTTGCGAGTAGCATTACGCTCGAAGAGTTGCAAAGCATCGCACACGAAGCCGAAAGTCAAAAGTTCCCCAACAGCGTTATTCTGGAGCGTTTGAACCTTTCAATACTGGAGGCCCAGAAGTGCATTACGGTTATTCAGCAGCTTGATATAAATAAGATTCGAACGCGCACGCGAAACTCGCTGGAGTGTGCCAAGTACAAGCTGACGATGGATGAATTGGAGTTGTTTATCAATGAAATCAACAATCTCCGATGTGTAATTCGAGAGGGTGATAGTGTACGGGAGTTGCAGCGCATCGGGCAGGAATGGTTACGCCAGGCGGATAAGGCGCTGAAAATGCGTTTTAAGGATACGAATATGCATCAGCTGAATCAGCTTATCGAGGAGGGAAACGCACTGTGCATAGAGTTGCCGCAGATCGCTGAGCTGAAGGATCGGCTGACACAGTACAAATGGTATCGTGAGGTGCGCACATTACGTGAGAATACAGTCGATCGGCTGTCGCTGGAAGAAATCAAGAAGCTCATTAATGAAGGAATGCGAATACTACCGCATACAGTATTAGAGAAGGAACTGTCGCAGTTACACGGTATTATGTTGCAGATTATCGATTGGGAGCAGTCGGCAAACCAATGCTTCAAAACAGAGACACAACATAAGATCAGTGAAATTGATAGTCTTTTGGAGCGGGCGCAAAATATCGAGGAGTTCTTGCCACTGGCCGGTCAGCTGAAAGAAGCGCTGCATAAATCCAAGGAATGGTTACATGCGATCGAAACGCTAGAAAGTAGCAAAAATTATAACTTTTTCCACACACTCCAAAATCTGGCCAATCGGGCAAAGCTACTGCCAGTAGAGATGGAGAGCAAGCTGCTGTGTGAAACTATTTTCGGCACCACGACCACCGGCGGAGGCTGTTACAATCGAAACGGCGGCCAGATGCTTCTGTTCAACTCGATGGGTTTTATCGGAGCTAGTGGTGACGAGTGGCGCAATAAATCTTCTTCACCAGCACCTTCGCAGAAGAGGAAAAGAAATGGTTCGATCTCGAACCTGGACGATCCAGTCATACCGGGTAGTGGTATGGAAACAATAATGaaaaaaaTCAAGGAGGATGGCAGCATTGCTGAGCAAGATAAGAGACTGCTAAGAGCTAAGCTGCTGCTGGACTGGAACGAATCGGACGGTGGGCTGGGAACCAGCAGTGACAGAAACATGCTTGGAAGTTACGACAATATGCGGCAGTCGCAGCAGCAGCAAAATCGATCAAATAGAAGTGGTTGCGACGTAGTTTATCATTGCGCCAAGTGCTACGAGATGGTAGCCAGAGCCAACGTGTTGCGGAAGTATCGTCATAAGCAGCATCATCATCATTGCCGGCATCATGAAAGGCACAGTAAGGTAACTGTTAAACAGGAGCAGAATCATCAGCAGCAAAATAAtagtagtagtagtagtagtagCTTGTCATCTATGGAACAGTTGTTACAAATGAAAACATTAAATGAGGACGACTTTTTTGTGGATAACAGTACAAGAGAAAGGACAAGCGCTGCAGCAGAAGGAGGAAGTAGTTTTGATGATTTTTCATTTAAATTTGGCGAACACGATGAGGCCGAAGATGAGCTAGATGACGAGGAGGCAGCAGATGAGGTGAAAGCAGAGGACGAAGATGAGGAAGAAACTGCAGATGGTGGACACGTGGGGAGAAATGGGTGCCATGGTTGCAAACCACCGGACGAAAATGAACGCAAACCAAGTGCATTGAAACCTTTGCTGACTGCTACCGCTGATGGCATAAAGGTCGAACCGTTGGATGAGAGTGATCACGTCGCTGAAGAGGATAGAGAGGAACGGCACAATTCTAAAGGCTCTAGCGGAGCGGGGTCCGTGGTAGCCGCTACTAAAACTCTCTGCTCCGAGAGTACTAGTCAAGCGTTGGAAGTTTTGTCTGCCAATGGTGGAAGTCATGCGAATGGAGCCAACGGTGTTAGTACCTCTGCAAATGCTTCTCTGCAACAGCACGACAAGCAGCGATCGGAACACAATCAACCCAATAATTTAACAAACTTATGA
Protein Sequence
MKSKSRNSLTNGSSGGGSGSSSSGSGSDNYANGSSHGPNGATMTGALGASGASVGTMNGGGRHLQSSSTMSAENSPSRSNISATDAGTSGLDGTDCPDNQQQSQQPMNHQNNRNHSCQQPRQGGNRPHISLDKCDDFQFNVPPEAPVFEPSEEDFKNPLVYINKIRPTAEKYGICKIRPPSSWQPPFTVDVEKLTFTPRIQRLNELEAETRIKLNFLDQIAKFCELQGTTLKIPMVERKPLDLYTLHKIVNQEGGLEVVTKERKWSKVACRMGYQQGKSVGSNLRAHYDRLLYPFDVYRSGKVIDLANIDPEPSEDCEYEPHCIESRQQVQPPMTAARRSQRFAQQQNSKPPSTTGSSAGGSVRGSSDEMSPGKKELRHRSMLELASKLAAAARDQAATNGSASKEEKSGGGGAHGYDPMAKYICHMCNRGDVEESMLLCDGCDASYHTFCLMPPLQDIPKGDWRCPKCIVEENSKPVEAFGFEQAQREYTLQQFGEMADQFKSNYFKMPVHLVPTELVEREFWRIVSSIDEDVTVEYGADLHTMDHGSGFPTKSSPYLSSSDQEYAESSWNLNNLPVLDESILGHINADISGMKVPWMYVGMCFATFCWHNEDHWSYSINYLHWGEPKTWYGVPGSRAEEFELAMKSAAPELFHSQPDLLHQLVTIMNPNILMNANVPVYRTDQHAGEFVVTFPRAYHAGFNQGYNFAEAVNFAPADWMKMGRECVNHYSKLRRYCVFSHDELVCKMALEPDRLNLGIATACYIDMAEMVDTEKKLRKNLLEWGVSNAEREAFELLTDDARQCEICKTTCFLSAVNCKCTKNLACLRHFAELCECPPENHTLKYRYTLDELPLMVQKLKVKAESFEKWLFRVRDVLDPSVASSITLEELQSIAHEAESQKFPNSVILERLNLSILEAQKCITVIQQLDINKIRTRTRNSLECAKYKLTMDELELFINEINNLRCVIREGDSVRELQRIGQEWLRQADKALKMRFKDTNMHQLNQLIEEGNALCIELPQIAELKDRLTQYKWYREVRTLRENTVDRLSLEEIKKLINEGMRILPHTVLEKELSQLHGIMLQIIDWEQSANQCFKTETQHKISEIDSLLERAQNIEEFLPLAGQLKEALHKSKEWLHAIETLESSKNYNFFHTLQNLANRAKLLPVEMESKLLCETIFGTTTTGGGCYNRNGGQMLLFNSMGFIGASGDEWRNKSSSPAPSQKRKRNGSISNLDDPVIPGSGMETIMKKIKEDGSIAEQDKRLLRAKLLLDWNESDGGLGTSSDRNMLGSYDNMRQSQQQQNRSNRSGCDVVYHCAKCYEMVARANVLRKYRHKQHHHHCRHHERHSKVTVKQEQNHQQQNNSSSSSSSLSSMEQLLQMKTLNEDDFFVDNSTRERTSAAAEGGSSFDDFSFKFGEHDEAEDELDDEEAADEVKAEDEDEEETADGGHVGRNGCHGCKPPDENERKPSALKPLLTATADGIKVEPLDESDHVAEEDREERHNSKGSSGAGSVVAATKTLCSESTSQALEVLSANGGSHANGANGVSTSANASLQQHDKQRSEHNQPNNLTNL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00106232;
90% Identity
iTF_00106804;
80% Identity
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