Adar006226.1
Basic Information
- Insect
- Anopheles darlingi
- Gene Symbol
- -
- Assembly
- GCA_000211455.3
- Location
- scaffold:66175-68910[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 3.4 2e+02 2.0 0.6 3 23 279 300 277 300 0.89 2 13 0.44 26 4.8 1.8 1 23 306 328 306 328 0.96 3 13 0.18 11 6.0 3.8 1 23 332 355 332 355 0.97 4 13 0.0034 0.2 11.4 0.4 1 23 357 379 357 379 0.97 5 13 1.5e-06 9e-05 22.0 0.6 2 21 388 407 388 408 0.95 6 13 4.2e-05 0.0025 17.4 0.6 2 23 464 486 463 486 0.95 7 13 0.14 8.1 6.4 3.1 1 23 494 516 494 516 0.86 8 13 0.0011 0.063 13.0 0.3 3 23 535 556 534 556 0.92 9 13 3e-05 0.0018 17.9 2.3 1 23 563 586 563 586 0.94 10 13 0.00083 0.049 13.4 3.2 1 23 593 615 593 615 0.97 11 13 2.2e-05 0.0013 18.3 3.5 1 23 621 643 621 643 0.97 12 13 3.9e-05 0.0023 17.5 1.8 1 23 649 671 649 671 0.98 13 13 8.6e-06 0.00051 19.6 1.0 1 23 677 700 677 700 0.97
Sequence Information
- Coding Sequence
- ATGCCGCCAAAGGGGGCCGCCCCAATCCAGCTAAATAAGCGAACCTGCCGCCTGTGCCTGAATGACTGCCAGGAGCTGTTATCCTTGGAGTGTGCTCTCACACCCGAAGAACAGCAGAATATCATCTCCAAGTTTCTACAGATCGACCTGAAGGAAAACTCACCGTTCAGCAACGCTTGCCAGAGCTGCGTGGACGAGGTCCGTCGGATAGAATACTGGAGGGAATTCTTTACGAGCAAGAATCGCATGTTCGATGTTCTTTGGACACAACACAAACGGTTTCAAGGCAACAAAAAGCCGAAGCTCTTCAGAGAAGCGATCGTCAGGGATAAAAGAGTGATCGCGGATGGCTACATTATCGATCACATCGTGTTGGAGCAGAACGAGCTGTACATTGATCCGATGGAAGAGTTCGCAAAAGACGAAGAAGAGGACGATCAGGTTTTGGACGTCAAACAAGAGGTTACCGATCCGGAATCTTCACTTGCAAACGAGGAGCTGGTGTATGAGGAAGTTGCCGTAGAGGTCGAAGACATCGAAGATGGATCAGTGCTCATGGCGGAGGCGAAGCAACCAGCCGATGATATCGACGAAGAAGAAAGCATGGTGATAGAGGAAGGGGACGAAATCTTGATGGAAGAAGAAGAAGAGGAGGAGGAGGAGATACTCGAGGAGCATATAGACGAGCAGCAGATAGGAAGGGAAGATTCGACGGCAGAGGAAACTGGGGAGGATGTTTGCCATAACGAAGCGGAAAGTGAGCAGATTGAGGAGAGCGGCAAGATCGAAGTTCTGGAAGTCAACGGTGGAGTATACGATAGGACGCTCCTCTGTTGCTATCTTTGCATGCAGGAGTATGACGACGCGGACCAGCTTAGTCAACACTTCCAAGAGGCACATCAGGATACGGTACCGTTTCACTGCGACAAATGCCTGTCCTATTTCTCCTCGATGGAGGACGTGAACCAGCATCTTGTCACGCATGTGTACCCGTTCGTGTGCCTCTACTGTCGGCAACAGTACAGTCACGAGGTACTGCTAGTGGAACACAACAAGACTTGCCATGCGTATCGCTGTCCGCACTGTTCGGCGGAATTCGAGATCATGGCCCAGCTGAATGCCCACAAGAAGGAACACGCAGCCATACTACGGCAATCAAACCGATGCAAAACCTGTGGACGAACGTTTACGCAGCAGGGCAATCTGTTACGGCACGTACGGCTACGTTCCTGCGTAAAGCCGACACCGAAGATGGGGAAATCGAAATCGAGCAACCAAAAGGCCTCGTCGGAAGCTGCTAATAGTCTGCGTCCCATAAGGATCTTCCAAGAATTGTCTGCAGATAAAACATTGAAGGATATCGAGGAGATTCGCATGAAGAATGTGGTAGTTTGTCAAGTGTGTAGCCATCGGTTCGAGAGCAACAGCAATCTTGCGCGTCACATCGATCGTGAGCACGCTGAGTTCAAAATTCCGCTCTATAGCTGCGACGTTTGTCCCAAAAAGTTTACGGTCTTTGAAAAGTGTATCCGACACCGTGCATTTCATCGGCAGTCGAAGCCAAAGGAGAAACCGGCGAAAAAGGAGGATTCCGACCGGAATTGTAAGCTGTGCGGCAAGGAGTTCCGCATCGAGTTCCAACTCCTGCGCCATCTGGCCGAAGAGCACATGCTGGCGCTGCAACTGTTCGAGTGTGATCAGTGCGATCGAAAGTTTTCCACCGAAACCAAGCTACGCAAGCATCTGTACAATAGCCACCGCGAGAACAAGACGCTCTACGTTTGCTCGCACTGTGGGCAGAAGTTCGAGAAGAAGCTCACTTTGAAGGACCATGAAACAAAGCATCTGGGCGAACCGGCGTACCGGTGTGAAATCTGCACCAAAACCTTCATCCACAAGCACAGTCTCGATCGGCATGCGCTCGTGCACAGCGATGCGAAGATGTTCGAGTGTGAATTTTGTCTGAAGCGCTTCAAGCGCAACACAACACTAGTAATACATCGCAGGATACATACTGGGGAAAAGCCCTACTCCTGCGATACGTGCGATCTACGTTTCATCGATTCCAGCACCCTCATCAAGCACCGGCAGCGATCGCATTCCAAAACCGAATGA
- Protein Sequence
- MPPKGAAPIQLNKRTCRLCLNDCQELLSLECALTPEEQQNIISKFLQIDLKENSPFSNACQSCVDEVRRIEYWREFFTSKNRMFDVLWTQHKRFQGNKKPKLFREAIVRDKRVIADGYIIDHIVLEQNELYIDPMEEFAKDEEEDDQVLDVKQEVTDPESSLANEELVYEEVAVEVEDIEDGSVLMAEAKQPADDIDEEESMVIEEGDEILMEEEEEEEEEILEEHIDEQQIGREDSTAEETGEDVCHNEAESEQIEESGKIEVLEVNGGVYDRTLLCCYLCMQEYDDADQLSQHFQEAHQDTVPFHCDKCLSYFSSMEDVNQHLVTHVYPFVCLYCRQQYSHEVLLVEHNKTCHAYRCPHCSAEFEIMAQLNAHKKEHAAILRQSNRCKTCGRTFTQQGNLLRHVRLRSCVKPTPKMGKSKSSNQKASSEAANSLRPIRIFQELSADKTLKDIEEIRMKNVVVCQVCSHRFESNSNLARHIDREHAEFKIPLYSCDVCPKKFTVFEKCIRHRAFHRQSKPKEKPAKKEDSDRNCKLCGKEFRIEFQLLRHLAEEHMLALQLFECDQCDRKFSTETKLRKHLYNSHRENKTLYVCSHCGQKFEKKLTLKDHETKHLGEPAYRCEICTKTFIHKHSLDRHALVHSDAKMFECEFCLKRFKRNTTLVIHRRIHTGEKPYSCDTCDLRFIDSSTLIKHRQRSHSKTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00092331; iTF_00092972;
- 90% Identity
- -
- 80% Identity
- -