Aaqu009307.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- -
- Assembly
- GCA_002846955.1
- Location
- NJHH01006653.1:61384-64176[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.14 8.9 6.5 2.2 1 23 278 301 278 301 0.91 2 13 2.2 1.4e+02 2.7 0.8 1 23 307 329 307 329 0.93 3 13 0.14 9 6.5 3.6 1 23 333 356 333 356 0.97 4 13 0.0039 0.24 11.4 0.4 1 23 358 380 358 380 0.97 5 13 1.7e-06 0.00011 22.0 0.6 2 21 389 408 389 409 0.95 6 13 4.9e-05 0.0031 17.4 0.1 2 23 465 487 464 487 0.95 7 13 0.25 16 5.7 3.2 1 22 495 516 495 517 0.82 8 13 0.0015 0.096 12.7 0.3 3 23 536 557 535 557 0.91 9 13 3.4e-05 0.0022 17.9 2.3 1 23 564 587 564 587 0.94 10 13 0.00094 0.059 13.4 3.2 1 23 594 616 594 616 0.97 11 13 2.6e-05 0.0016 18.3 3.5 1 23 622 644 622 644 0.97 12 13 4.4e-05 0.0028 17.5 1.8 1 23 650 672 650 672 0.98 13 13 6.3e-05 0.0039 17.1 0.5 1 23 678 701 678 701 0.97
Sequence Information
- Coding Sequence
- ATGCCGCCAAAGGTGGGCGATCCCATCCAGCTAAACAATCGGACCTGCCGCCTATGCCTGGATAACTGCCAGGAGCTTCTACCGTTGGAGCGTGCTCTCAACCAAGAACAGCTGCAGAACGTCATCGCCAAGTTTCTAGAGATCGACTTGAAGGAAAACTCCCCGTTTTGCAATGCTTGCCAGCGTTGCGTGGACGAGGTGCGTCGGATAGAGTACTGGAGGGCATTCTTTATGGACAAGAATCGCATGTTCGATGTTCTTTGGACGCAACACAAACGATTTCAAGGCAACAGAAAGCCGAAGCTCTACAGTGAGGCGATCGTCCGGGACAAAAGAGTGATCGCCGATGGCTACATCATCGATCACATCGTGTTGGAGCAGAACGAGCTGTACCTTGATCCGATGGACGAGTTCGTAaaggatgaagaagatgatgatcagctAGAGATTTTGGACGAAGTCAAACAAGAAGCTACTGGACAGGAATCTTCACCAGTGACCGAGGAGCTGGTGTATGAGGAGGTGGCCGTGGAGGTCGAAGACATCGAAGATGATGGAATGGTGCTCATGGCGGAGGAAAAGCATCAACAAGCAGATGACACCGACGAAGTAGGCATGGTGATAGAGGAAGCGGACGAAATTCTGCTGGAgggcgaagaggaggagataCTCGATGAGCACATAGACGAGCTGCAGATAGCGAGAGAAGATTCGACGGCAGAGGAAACCGGCGAGGATGTTTGCCAAAACGAACCGGACAGTGAACCGATTGAGGAGAGTGGCAAAATCGAGGTTCTGGAACTGAATGGTGGAGTGTACGATAGCACACTTCACTGTTGTTACCTCTGCACGCAGGAGTTTGACGACGCGGACCAGCTTGATCAACACTTCCAAGAGGGACACCAGGATACGTTACCGTATCACTGCGACAAGTGCCTGTCCTATTTCTCCCCGATGGAGGCCGTGAACCAACATCTTGTCACGCATGTGTACCCGTACGTGTGTCTCTATTGTCGGCAGCAGTACAGCCACGAGGTACTCCTGGtggaacacaacaaaacgTGCCATGCGTATCGCTGTCCGCACTGTTCGGCAGAGTTTGAGATCATGGCCCAGCTGAATGCCCACAAGAAAGAACACACCGCCATACTACGGCAGTCGAATCGATGCAAAACCTGTGGTCGAACGTTCACGCAGCAAGGCAATCTGTTACGGCACGTGCGGCTACGGTCCTGCGTgaaaccggcaccgaaaatggcaaaatcgAAAACGAGCAACCAGAAAGCCACCGCAGAACCTCAGAAAGCGCTGCGTGGTTCTAACAAGCGGCAATTGCCGGCTGATGGAGATGCATCGGAGTATAGCGACGACGTACGCTCGAAGAATCTGGTCGTGTGCCAGGTGTGTAGCCTTCGGTTcgagagcaacagcaatctAGCGCGTCACATCGATCGTGAGCACGCAGAGTTCAAAATTCCGCTCTACAGCTGCGACGTTTGTCCCAAAAAGTTTACGGTTTTCGAAAAGTGTGTCCGCCACCGGGCATTCCATCGGCATTCGAAGCCAAAGGAGAAACCGGTGAAAAAGGAGGATTCCGATCGGAACTGTAAACTGTGTGGCAAAGAGTTCCGCATCGAGTTCCAGCTGTTGCGCCATCTGGCCGATGAGCACATGCTGGCGTTGCAACTGTTCGAGTGTGATCAGTGCGATCGcaagttttccaccgaaaccaaGCTACGCAAGCATCTGTACAATAGCCATCGCGAGAACAAAACACTGTACGTTTGCTCGCACTGCGGGCAGAAGTTCGAGAAGAAGCTCACTCTGAAGGACCACGAGACGAAGCATCTGGGCGAACCGGCGTACCGGTGTGATATCTGCACCAAAACCTTCATCCACAAGCACAGCCTCGATCGGCATGCGCTCGTGCACAGCGATGCGAAGATGTTCGAGTGTGAGTTTTGTTTGAAGCGCTTCAAACGCAACACTACGCTGGTAATACACCGCAGGATACATACCGGTGAAAAGCCCTACTCCTGCGATGCGTGTGATCTTCGTTTCATCGATTCCAGCACACTCATCAAGCACCGGCAGCGATCGCATTCCAAAACCGCATGA
- Protein Sequence
- MPPKVGDPIQLNNRTCRLCLDNCQELLPLERALNQEQLQNVIAKFLEIDLKENSPFCNACQRCVDEVRRIEYWRAFFMDKNRMFDVLWTQHKRFQGNRKPKLYSEAIVRDKRVIADGYIIDHIVLEQNELYLDPMDEFVKDEEDDDQLEILDEVKQEATGQESSPVTEELVYEEVAVEVEDIEDDGMVLMAEEKHQQADDTDEVGMVIEEADEILLEGEEEEILDEHIDELQIAREDSTAEETGEDVCQNEPDSEPIEESGKIEVLELNGGVYDSTLHCCYLCTQEFDDADQLDQHFQEGHQDTLPYHCDKCLSYFSPMEAVNQHLVTHVYPYVCLYCRQQYSHEVLLVEHNKTCHAYRCPHCSAEFEIMAQLNAHKKEHTAILRQSNRCKTCGRTFTQQGNLLRHVRLRSCVKPAPKMAKSKTSNQKATAEPQKALRGSNKRQLPADGDASEYSDDVRSKNLVVCQVCSLRFESNSNLARHIDREHAEFKIPLYSCDVCPKKFTVFEKCVRHRAFHRHSKPKEKPVKKEDSDRNCKLCGKEFRIEFQLLRHLADEHMLALQLFECDQCDRKFSTETKLRKHLYNSHRENKTLYVCSHCGQKFEKKLTLKDHETKHLGEPAYRCDICTKTFIHKHSLDRHALVHSDAKMFECEFCLKRFKRNTTLVIHRRIHTGEKPYSCDACDLRFIDSSTLIKHRQRSHSKTA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098545;
- 90% Identity
- -
- 80% Identity
- -