Basic Information

Gene Symbol
-
Assembly
GCA_000211455.3
Location
scaffold:17927-29020[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.53 32 4.5 0.0 2 23 6 27 5 27 0.96
2 14 0.011 0.63 9.9 1.6 1 23 2050 2073 2050 2073 0.92
3 14 0.013 0.75 9.7 1.5 1 23 2196 2218 2196 2218 0.97
4 14 0.00027 0.016 14.9 3.2 2 23 2221 2242 2220 2242 0.96
5 14 0.002 0.12 12.2 1.1 1 23 2248 2270 2248 2270 0.98
6 14 5.7e-05 0.0034 17.0 4.2 2 23 2277 2298 2276 2299 0.95
7 14 0.00039 0.023 14.4 0.5 1 23 2309 2331 2309 2331 0.97
8 14 0.00013 0.0079 15.9 2.8 2 23 2337 2359 2336 2359 0.96
9 14 0.01 0.62 9.9 0.6 3 23 2373 2392 2372 2392 0.97
10 14 4.9e-05 0.0029 17.2 1.5 1 20 2401 2420 2401 2423 0.91
11 14 0.0066 0.39 10.5 0.6 1 23 2431 2453 2431 2453 0.97
12 14 5.6e-06 0.00033 20.2 3.5 1 23 2459 2481 2459 2481 0.98
13 14 7.1e-05 0.0042 16.7 6.3 1 23 2487 2509 2487 2509 0.98
14 14 0.0026 0.16 11.8 4.4 1 23 2515 2537 2515 2538 0.96

Sequence Information

Coding Sequence
ATGGATACATTGATCGAGTGCCCGGTGTGTACTCTGTACCTCCGTTCCGGGATGAACCTGTCGGTACACCTCGATACGCACCCCAAAGAGAGTGTAATTAAGGCACTGGTAGCCATCGCCCAGAAGCGTACAACTTCGTCGTCGGTCACACACAGCACCGGGGGAGAAACCAACGCTACAGGAGGTGGCGCTATCCTAGGATCTACCGACATTTTTTCTTATCTAGTGCTCGGTGGAACCGGAGCTACTAGTAGTGCTGCTACGACCGAAGCTGGAATAAATAATATGCTAACAGAATCCGGCAATAAAGTTGGTCGTACCGTTCCAGCAGTAGGGCAGCAGCAGGCAGATGCACTGTCCCTGAATGTCACGGGCCGTGCTCAAAACCGTACCCCACCGAATGCCATCATGTACGATGGTTCGACGACGATCGCTTACGCTGATGCACCAGTATCAGCGGCTGGTCTAAGCACAGCAGTGCTTTCTGCTTCATCTACTCAACCTCTGGTCTCCACCGTTGGGCCTACCGCAACCAACGGGATCGGCACGCTAGGTCCCAACCATACGATAGCATTGATGAACACGTGCGAAGTAAGCGGTGTTACCACGTTGAGCCATTACCCAGCGAATAACGTAACGATCCTGAAGCGTGAATATCTCCAGCAACAAAGTAATCCGTTAGGAGGAGCTAATACGCTGGGCACCAGTTTCCTGCCCACAGCCGAGTCATTAGAGCATGGAAACACCAGCTCCTCCAACACTTGTGCCGATGGTCCAGCCTCAACCGTTGTTGGTCGTGCGCCTGGTGGAAACAACGCGATCTCCATTTACCCACGCTATACAAACGAGCTCTACTCTGGGCCACCTCCTCCTTATAGTACTGCGATCTCCTCCTCGGTTGCCACCAATACACAAATAATGCCTGCAGCGGTGGTGGCCGATCCTGCTATACCTGGTGCCGGCCTCGGTGGAAAGCTTACTTTCATAAGCAGGAGCAAGACTGGCGCCTATACTATCGACTTAAAAAACAACAATCTCGGTAGCTTAAGCAACAACGACAGTAGCTCTACCAGCACCCAACAACTTGCTACTTACAACACATTAGTACCTTTTTCCGCAATTGAAGTCCCGACAAGCACTTCGACGGTTTGCAGTGTCGCCAATGTGTCAATGGCGGCCGGTTCAACCTCAGCCGCTTTCCGATCGCTGTCACTAGCGCACCAACAGCTTCGTCCGGAAGCACAATACACCGAGAGAGAGGATGGAAGTTTTATTGTGTTCGAGAACCCAAAGAAGATAGTGGAGTATCGCGAAAATGAGGCAGGTGAATTGACGCTTTTCGAGAAGATCGTCAAATCACCACCCTGGACAGCACAGGTTGACCAACCGAAGCCGATGCTGGGAGGCGTTGGGCAGCTACAACAGCGTCATCCCACGCAATCTAACGAATATGCTACAGCACAGCAATACCATCAACCGGTAATTCATGATCATGAGCAACTGCAGCTTAGCGATCGCCAGAACTCTGAGCGGTCCGGCAATGTAGTACGATCGGAAGCAAGCGTCATACCATCATCCTCCACGGTCCCTTCCTATGCTGTTCAATCGATGCCAACGTTCCAGTTGCTAGTGGCCAGCTCCAATGCATGCTCCACGCCGGCACTAGCGCCACCCCCAACGTTGTCCGGTAGAGATACAGCCACTATGAATAATACGACGACAGCGGAAATTATTACGGCAGTCACGGGATCGGCCAGTACAAGTACTACACCAGCCACTCCCTCCTCCGTTGCCAATCCCACCGCACCCTTGCCGATGCGAAAACGAACCGCCAGCGGACTGAAAGTACTAAGCAACATCAAAGTGACCACCGATCTCTCCCAGGGTATTAAGGACATTATCTTAAACCTCAATTCGCGCAATGGGGGCGGTCGCACCAATGCGATCATTGCCGCAGCGTCTTCGCTAAGTGGATCGACGGGCATGGACCGTGGAAATTGTAGTCGACGTTCGTTTGGCGAGGAACGGCCCGTGGTGTCCTGTGGAAACGAATTGATAATACCGCCAGCCAAAAGTCCAGCGACTGCTAGTGATAGTACCAGCATTCTCGCTAGTAACATTAACATAGCTAGCGTGCAGGGTATCCGTGCCAATAGCATCAATGAGCGGCTACAGGAGCTGCAAATGATTGATGAGGTAGAAGAGGTGGTGGCTGAAGATGATTTACTTGAACCTGAAGAGCTTGACGATGACGACGATGATGATTTAGAGGAAAACGATGATGCAGATGATGAAGAGGACGAAGAAGACGATACAGGCATTTCCACGGCGGTAGATTTGGAAGGCTCGTTGGTAAAACCCAAGCTCAAGAACTGTTTTACGGGTCAGGTTATTGATGCGGATGCGTCACCGTCAGCTAATAACGTTGCTGCAGTAGTAACAAGTGTCATCCGGATGACTTCAGACTCTGCAACGCCTGCGTGCTCACAGGTGGCAGCAAGTAGCAGCAGTCAATCGGACTTAACGTTAGGCGAGGTGACTTCACTGTCCGAGGAACCCGACATCAAACCGACAGTTCTTCATTGCGACAACGGAGAGGAAAATGCAACCACTTCGCTAGTTGGCGTTGAAAGATCCTGCAACGACGAACGAAAATTGATATTTCTTCCCGTTGAAGGGGCACAGACGCAAACACTGTCGACGGCGGCTGGTAGCAGCAGTAGTAATACAATGGTTACGGCAACGGCTTGCTCAAGCCGGGCATCACCAGATGGCGGAAAGAATTTTATTCAGACCTTACCGTCTACCACGTCATGCTCTCAGCAACGTCCAGCTACATGGACCATTGGTGGGTACACTAACACCAACTGCAAGCAGGTGTTTCGGCCTCCCAAAAAGCTGGCGGTAAAATTAATCCGTCCCCTTCCGTTAGCTAGTAAAGGTGACAATGGTAGTGGCGTCGGTGAAGTTCCATGCTCGGATACCTCTGGTGTGCAATGTCGTGCTGGAACGTCTGCGAAAGGTGTATCTTCCAACTCGGCCTCCTTGATACTGACTCCTTTGGCGCCAGGTACCTCCGAAAGAGCCCCATTACGAACAAACTCAATTCCGAATAGTATTACCGTCGTGATTCAAAAGACTGAGCACCACCGCCTGTCGGGAGTAGATCTGCCGCCACGCGGCAATGGTGCAAACGACGAGAGCGGCACATTCCGGGTGCTGCAATGTGAGGACAGTACCGCTACATTGTCCACTGACCATCCACCACCAGTGTGTCCTTCAGGTAGTCAAATCCAGCACCAGCTACAACAATTGCTCCACATTAAGCAGGAACGTCCTTCGATGGAAACAGAGCCAACGAGCCGATCGCCACAAGCAACACCGCAATCGCCAATTCGCCCAACCTCACTCATCTGTTCCGAGATTTCGCCGCACGATTCCTCAATCGACATCGCCAAGCAGCGCCAACTGGTTGTACATCAGGTGGCACTGAAAGACGAAACGCTACATTCACATTCGAAGGCAGCAGTCACCCACCATTTGCAGCCATCTGTCTCATCCGATGTAAATGTCGACGTTTACAACCTGACGTTTATTGGCAATGCCGATCATGCTGTTTGTGAGCCGCTCCTGCAGAAGAAAAAATCAAACGAAGATCTAGAAGCTCCTGATTCGATCAGCAAGGAGAAGGAGGTAGTGGAGGTTATCGATCCAGAGAACGGAGAAGAAGACGAGGAGATGATGGATGGTAGTAATGAAGCGCGTATCGCTAACCCGGACAGTAAGGCATCAGTGGCAGAACTTATACGTGCTGCACGGCAACAGTTCGGTTGCGCAGGTGGGAACAATGATCGCAGCTGGCAAATGAAGGTACAATCTGGAATAGATGGATTTACCGTAAGTCCTGTGATGGTAGGTGATCTACAGCAACAGGAGGACGAGGACGAAGACGAAGACAGTCACAGTAGCAGCGGCGGAGAGATCGACGAGATTCAAATGAAGCACATTCCTCGTGATAAGCCGCACTTTTACGACATTGCTGCACATGCTGGCAGTGAGCCGCTGCGCCAAAACGACATTGAAGAGGACAGTAAGGATGAGCTAGTAGAGTTGCTAGATGCAACTAATACGAGGCCCAAAACGGAGGGAACATGGGAGATGCATCTGCGCCATCAACGAATAGTGAAAAAAGGGTGCAACAGCGAAGTCGATTGTAGCAACAGTGACGGAATAACAGCAACTAGTTCGGTCAAGTCTATGGAGAATGGATTAATTTCTTCTGCGCAGTCGCTCGATAAAAAGGAGCAAATTGCATACCAGTCATCATGTATTCCGTTATTGCCGACAGCCGAAGATAATGCTACGAGCGAGTTAGAATCGTCGATAGTGAAACCGGAGAAAAATGCGAAGGAAAACAAATTGTTTGATGAGCCAAAACAACATCTACGAGAAATGGCACCAAATTCCTGTTCTTCGTCTGATATAAAGGAGAAGGATTTGCTTGAAGCTGGCCCTTCTAGAACAGTGCTTGGTGGCTCATATGATACAACTATTCCGAAGAAAGAACCAGGGGTAGCTCCACTGCAGTCCCAGTCGCATAAAACTAAAATGCATTTGGAAGGAAGAGAATATAGGCAGGTTTCGTGTCCTATTTCCACCAGTATTCTTCGAAGCGATGAGAAGGACCTGCTCGAAGCGGGACCATCGCATAGTACTGGCAATTTGCAGCAGGAACGTCACAGCACTGTCGGACCCCGTGCAACACCTGTGCACGAGCACAATGGTTCCAGCAGTAACGATTGTATGTTACTCAACACTGAACAGACTAAAGCTGAAAAACAAAGTGAAGCCGGCAGTACCGGTCACCCAGTATCCTGGGTGCGCAAATATGCCGTAGGACAGCAATGTAAAACCGAAGAAAAGGAAGAGGAGCTAGTGCAGACAATGGCGAATGAAGTAGATGATGCAAGTCCAGACCACGAGCTGCTAATGACTGCTGGAACAAGTGATATGCAACTGCTGACCGCGCCCTACCGAGAGACTGATGAGTGTCTAGATAGCTATGGGTCCCGTTACATTGGAATTGGTTGCGATGATaactgtagcatcaacagcaacagcagcaagtgcaatagtagtggccatgaaagcaacagcaacagcaacaacaaaatcaaccgcgacgggagcagtaaaggcaaccgcaccagcaacagtaatagtaactgcagcagtcgtagcagtatcagcaccagcaatagcaaacgcaacagcagagacagcaacgcaatgaaaggttgtagcaaccataacacgacggattgcatcagtcaagcaacatcagctaatggcggtgggggtcacggcagcaTTAGAGCAGGAGGTTCTGGTGGGTTGACGGGCAATACCTCTAGCCGTCCACCATCGACGGTGCTCTCGTCCGCTTCCTCGACCACTTCGTCCAATCTAGAGCGTGCGGTTTCGACGGAAAGTCTTAACATCCGGACGGACGAGAAAATGCCGGCCAAAGGTGAAATCTCTGAGCAGGAGAGTAACGGTGATATGGACATGACATCTTGGAATCGGCTGTACACTGCAGATGAAAGCATTCCCATCTATCCGAGCTCTTACGATCTTTCGACCGCACAGGAAAGTTGGAACCTTAGCAATCGCCTGCAGCATCAGTCTCATAATCATCCACCAGGTACCAGTACTAGTGGAACCGTTACCAACAGTGCACATCACTATTACGTGCCACACGGTGTAGGATTTCGATTTTACGTTCaaaaaaaCCAGCAGTCTCCTCAACTAGAGCAGCCGCTATATCGTAGCAATGGATCCGATGGTGAACTGCTGGTTACGGAAGAAGAGTGCGCTGAGGAGGAGGAGGTCGAGGATGACGAAGTGTTGGAGTCAAACGAGCACGCTACTGTGAAGGGTTCAATCGTGGTCAAAGTGGAGCAGCATTCTTCGTTTTCTGTCAACGCTGTGAAAGAAGCGAAGCTGATAGCGCAAGAGGGAAATCCTAGCCGTCCATCGTACTTTGATATTAGCTCGGTCGGCGGCCAGCAACAACAATCCATACTGGAATCGTCATTACGCGAAGAAGCAACAGCATCATCGAAAGCGGGTGGAAAGCTGCGCGTATACCGCTGTCAGGAGTGTCCGAAATCGTTTGCCTCCATCAAGCAACGACGCTTGCACGTACACAATGAGCACGCGGAGGAGCACCTACAGTTGACCCAACAGCGTCACCAACATCAGCAAGAACCGCAAACTTTGGTGGACTCAAAGGAGGGCATCATCGGAAGCGTGGATATTGCTGTAACTGGTAATTCCTCTACGGCCACAACCGTCTCATCCTCACCACTGCAGGTAGTAATGAACTACAACTGGCTAAAGCAAGAAATTCAACGAAAGTGTGAAGCAACAACAACCGGCAGCAGCAGTGCGATCATGCTGGCTGCCAGAAGCTCCTCCGCAACCGGCGATAATGGTGCCGTTGGAGCAGATGGTGTTGCCACCACCACAGCGATGGACTTTGTGATTAGTTCCGCCATCGTTCCAGCCAGTCGTAAGCGTACATACGTGTGCGGCAAGTGTAAGAAGCAGTTCCAACGCTTCAACCAGTTCGATGCACACTTGATGGAACATCCAGTCGAATGTTGCAGCTGTGGTCGCACCTTTAAACAATGGCGCAACTTTTCCCTGCACATTAAGCGTCACCTCGGCATCAAGGAACACCAGTGCCGGGCATGTGGTAAGCAGTTTGTGATCAAACAGAAGTTAGTAGAGCATATGCGCATTCATTCCGGCATCGCTCCAATCAAGTGTCAACAGTGTGGACGTCAGTTCAAGCGGTTTTCCAACCTTGCCCAGCATCGGAATCGACATCATGTTGCCCGGACAGTTGTGAAAAAAGACTTTGTGTGCCAGCAGTGCGGTGAAGTGTTTCACTCGCAAGCGAAAATGACCTGGCACCAGGAAATTCACGAAAAACAACCAAAATCGTGTCCATACTGCCGTGAAAAGTTCATTCATCGCAACAGTCTGACACGTCACATACGGCTATCGCACACGGAGAAATATGCAAAGCTAGAGCTGAAGACCGAACCGTGTACAGTGTGCAATCAGCCGTACACGAGAACCAGCATGCGGCGGCATATGGAGACCCATGGACTAGCCGAAGAGCGGCTAGCGTTTGCCTGCAGTATCTGCAACAAGCGGTTCACGACGAACTGGAATCTGAAACAGCATAAGTGGACGCACGCAAACCCAACCATGAAGCCGTATCAGTGCACGCTCTGTCCTAGCGGCTTTGTGCGCCATTCCGATTATGTGACACACGTGAACGCACACCGATCGGTACGACCGTATACTTGCAATCATTGCGGTCGTCAATTTATAAGGAAGTATAACTGGATACGGCACACGCGGGAACACGAAAGCGACAAAGGACACCGCTGCGAGGATTGTGGACGAAAGTTTCATCGCAAGTATTATTTGACTGAGCATCGCcgtattcacaccggcgagcgaccattttcctgcaacatctgcggcaaaACGTCTGCAACGAAGACGAATCATAACAAGCATGTACGCATTCACCATGCGCGCGATCCGTTAACCGCAGAGGGCTAA
Protein Sequence
MDTLIECPVCTLYLRSGMNLSVHLDTHPKESVIKALVAIAQKRTTSSSVTHSTGGETNATGGGAILGSTDIFSYLVLGGTGATSSAATTEAGINNMLTESGNKVGRTVPAVGQQQADALSLNVTGRAQNRTPPNAIMYDGSTTIAYADAPVSAAGLSTAVLSASSTQPLVSTVGPTATNGIGTLGPNHTIALMNTCEVSGVTTLSHYPANNVTILKREYLQQQSNPLGGANTLGTSFLPTAESLEHGNTSSSNTCADGPASTVVGRAPGGNNAISIYPRYTNELYSGPPPPYSTAISSSVATNTQIMPAAVVADPAIPGAGLGGKLTFISRSKTGAYTIDLKNNNLGSLSNNDSSSTSTQQLATYNTLVPFSAIEVPTSTSTVCSVANVSMAAGSTSAAFRSLSLAHQQLRPEAQYTEREDGSFIVFENPKKIVEYRENEAGELTLFEKIVKSPPWTAQVDQPKPMLGGVGQLQQRHPTQSNEYATAQQYHQPVIHDHEQLQLSDRQNSERSGNVVRSEASVIPSSSTVPSYAVQSMPTFQLLVASSNACSTPALAPPPTLSGRDTATMNNTTTAEIITAVTGSASTSTTPATPSSVANPTAPLPMRKRTASGLKVLSNIKVTTDLSQGIKDIILNLNSRNGGGRTNAIIAAASSLSGSTGMDRGNCSRRSFGEERPVVSCGNELIIPPAKSPATASDSTSILASNINIASVQGIRANSINERLQELQMIDEVEEVVAEDDLLEPEELDDDDDDDLEENDDADDEEDEEDDTGISTAVDLEGSLVKPKLKNCFTGQVIDADASPSANNVAAVVTSVIRMTSDSATPACSQVAASSSSQSDLTLGEVTSLSEEPDIKPTVLHCDNGEENATTSLVGVERSCNDERKLIFLPVEGAQTQTLSTAAGSSSSNTMVTATACSSRASPDGGKNFIQTLPSTTSCSQQRPATWTIGGYTNTNCKQVFRPPKKLAVKLIRPLPLASKGDNGSGVGEVPCSDTSGVQCRAGTSAKGVSSNSASLILTPLAPGTSERAPLRTNSIPNSITVVIQKTEHHRLSGVDLPPRGNGANDESGTFRVLQCEDSTATLSTDHPPPVCPSGSQIQHQLQQLLHIKQERPSMETEPTSRSPQATPQSPIRPTSLICSEISPHDSSIDIAKQRQLVVHQVALKDETLHSHSKAAVTHHLQPSVSSDVNVDVYNLTFIGNADHAVCEPLLQKKKSNEDLEAPDSISKEKEVVEVIDPENGEEDEEMMDGSNEARIANPDSKASVAELIRAARQQFGCAGGNNDRSWQMKVQSGIDGFTVSPVMVGDLQQQEDEDEDEDSHSSSGGEIDEIQMKHIPRDKPHFYDIAAHAGSEPLRQNDIEEDSKDELVELLDATNTRPKTEGTWEMHLRHQRIVKKGCNSEVDCSNSDGITATSSVKSMENGLISSAQSLDKKEQIAYQSSCIPLLPTAEDNATSELESSIVKPEKNAKENKLFDEPKQHLREMAPNSCSSSDIKEKDLLEAGPSRTVLGGSYDTTIPKKEPGVAPLQSQSHKTKMHLEGREYRQVSCPISTSILRSDEKDLLEAGPSHSTGNLQQERHSTVGPRATPVHEHNGSSSNDCMLLNTEQTKAEKQSEAGSTGHPVSWVRKYAVGQQCKTEEKEEELVQTMANEVDDASPDHELLMTAGTSDMQLLTAPYRETDECLDSYGSRYIGIGCDDNCSINSNSSKCNSSGHESNSNSNNKINRDGSSKGNRTSNSNSNCSSRSSISTSNSKRNSRDSNAMKGCSNHNTTDCISQATSANGGGGHGSIRAGGSGGLTGNTSSRPPSTVLSSASSTTSSNLERAVSTESLNIRTDEKMPAKGEISEQESNGDMDMTSWNRLYTADESIPIYPSSYDLSTAQESWNLSNRLQHQSHNHPPGTSTSGTVTNSAHHYYVPHGVGFRFYVQKNQQSPQLEQPLYRSNGSDGELLVTEEECAEEEEVEDDEVLESNEHATVKGSIVVKVEQHSSFSVNAVKEAKLIAQEGNPSRPSYFDISSVGGQQQQSILESSLREEATASSKAGGKLRVYRCQECPKSFASIKQRRLHVHNEHAEEHLQLTQQRHQHQQEPQTLVDSKEGIIGSVDIAVTGNSSTATTVSSSPLQVVMNYNWLKQEIQRKCEATTTGSSSAIMLAARSSSATGDNGAVGADGVATTTAMDFVISSAIVPASRKRTYVCGKCKKQFQRFNQFDAHLMEHPVECCSCGRTFKQWRNFSLHIKRHLGIKEHQCRACGKQFVIKQKLVEHMRIHSGIAPIKCQQCGRQFKRFSNLAQHRNRHHVARTVVKKDFVCQQCGEVFHSQAKMTWHQEIHEKQPKSCPYCREKFIHRNSLTRHIRLSHTEKYAKLELKTEPCTVCNQPYTRTSMRRHMETHGLAEERLAFACSICNKRFTTNWNLKQHKWTHANPTMKPYQCTLCPSGFVRHSDYVTHVNAHRSVRPYTCNHCGRQFIRKYNWIRHTREHESDKGHRCEDCGRKFHRKYYLTEHRRIHTGERPFSCNICGKTSATKTNHNKHVRIHHARDPLTAEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00092961; iTF_00092328;
90% Identity
-
80% Identity
-