Basic Information

Gene Symbol
-
Assembly
GCA_013758885.1
Location
NC:2058981-2070117[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 0.71 34 4.5 0.0 2 23 6 27 5 27 0.96
2 14 0.014 0.68 9.9 1.6 1 23 2036 2059 2036 2059 0.92
3 14 0.017 0.79 9.7 1.5 1 23 2180 2202 2180 2202 0.97
4 14 0.015 0.72 9.8 3.9 2 23 2205 2226 2204 2226 0.96
5 14 0.0026 0.12 12.2 1.1 1 23 2232 2254 2232 2254 0.98
6 14 7.6e-05 0.0036 17.0 4.2 2 23 2261 2282 2260 2283 0.95
7 14 0.0011 0.053 13.4 0.3 1 23 2293 2315 2293 2315 0.97
8 14 0.00018 0.0084 15.9 2.8 2 23 2321 2343 2320 2343 0.96
9 14 0.014 0.66 9.9 0.6 3 23 2357 2376 2356 2376 0.97
10 14 6.5e-05 0.0031 17.2 1.5 1 20 2385 2404 2385 2407 0.91
11 14 0.0088 0.42 10.5 0.6 1 23 2415 2437 2415 2437 0.97
12 14 7.5e-06 0.00036 20.2 3.5 1 23 2443 2465 2443 2465 0.98
13 14 9.5e-05 0.0045 16.7 6.3 1 23 2471 2493 2471 2493 0.98
14 14 0.0035 0.17 11.8 4.4 1 23 2499 2521 2499 2522 0.96

Sequence Information

Coding Sequence
ATGGATACATTGATCGAGTGCCCGGTGTGTACGCTGTACCTTCGTTCCGGGATGAACCTTTCGGTACATCTCGATACGCACCCCAAAGAGAGTGTTATTAAGGCACTGGTCGCTATCGCCCAGAAGCGTACAACTCCATCGTCGGTCACACACAGCACCGGAGGAGAAACCAACGTTTCAGGAGGTGGCGCTATTCTAGGATCTACCGATATTTTTTCATACCTTGTGCtcggtggtagcggtgctactactaccactgccaCGACAGAAGGTGGAATAAATAATTTGCTCGCTGAATCCGGGAGCAAAGTTGGTCGTATCGTCCCTGCCgtgggccagcagcagacggatGCGCTGAGCCTGAATATCACGGGCCGTGCGCAAAATCATACCCCACCGAATGCCATCATGTACGATGGTTCAACAACGGTCGCTTATACTGATGCACCAGTATCAGCGACTGGCCTAAGCACAGCGCTGCTTTCTGCCTCATCTACTCAACCTTTAGTGTCGACCGTTGGGCCTTCCGCTGCTAGCGGGATCGGCACGCTGGCTCCCAACCACACAATTGCTTTGATGAACACGTGCGAAGTAAGCGGTGTGACCACGTTGAGCCACTATCCAGCGAACAATGTGACGATTTTGAAGCGCGAATACCTCCAGCAGCAAAGTAATCCGTTAGGAGGAGCCAACACACTGGGCGCCACTTTTCTGCCAACAGCTGAGTCATTAGAGCatggcagcaccagctcctccAACAATTGTGTTGCTGGACCAGCCTCAACAGTTGTTGGGCGCGCGCCTGGTGGCAACAACGCGATCTCCATTTACCCACGCTACACGAATGAGCTCTACTCTGGGCCACCACCTCCTTATAGTACTGCGATCTCCTCCTCGGttgccaccaacacacaaataATGCCACCAGCGGTGGTAGCTGATCCTGCTACACCTGGCCCCGGCCTTGGTGGAAAGcttaccatcatcagcaggagcaagaCTGGCGCCTACACTATCGActtaaaaaacaacaatattGGTAGCTTAAGCAACAATGACGGTAGCTCTACCACCACCCATCAGCTTGCTACTTACAACACATTAGTACCTTTTTCGGCAATTGATGCCCCGACGACCACTTCGACAGTGTGCAGTGTCGCCAATGTGTCAATGTCGGCCGGTTCAACATCGGCCGCTTTCCGATCTCTATCACTAGCGCACCAACAGCTTCGCCCGGAAGCACAGTACACCGAGAGAGAGGACGGGAGTTTTGTTGTGTTCGAAAACCCAAAGAAAATAGTGGAGTATCGAGAAAATGAAGCCGGTGAATTGACGCTTTTCGAGAAGATCGTTAAATCACCACCCTGGACAGCGCAGGTTgaccaaccgaaaccgatgtTGGGAGGCGTTGGACAGCAGCGTCATCCGGGACAGTCCAACGACTACTCTCCATCACAGCAATACCCTCAGCCGGTAATTGAGGACTCACAGCGGTCCGGAGAAGTAGTACGATCGGAAGTAAGCGGGATAGCATCATCCTCCACTGTCCCTTCTTATGCTGTTCAATCGATGCCAACGTTCCAGTTGCTAGTGGCTAGCTCCTCTGCATCCAATGTATGTCCCACGCCGGCACTAGCACCACCTTCGTCATTGACCGGTACAGGTACAGCTGCTTTGAATAATGCGACGACATCGGACGTGATTACGGCAGTAACAGGATCCGCCAGTTCAAGTATTACACCACCCACTTCTTCCTCCTGCGTTGCTAATCCCACCGAACCATCACCGATGCGCAAACGAACCGCCAGCGGATTGAAAGTGCTAAGCAACGTTAAAGTGACTACCGATCTCTCCCAGGGTATTAAGGACATTATCTTGAACCTCAATTCGCGTAATGGGAGCGGTCGCACCAACGCGATCATTGCCGCATCGTCTTCACTGAGTGGATCGACGGGCATAGTTCGTGGACACTGTAGTCGCCGTTCGGTTGGCGAAGAACGGCCCGTAGTATCCTGTGGAAACGAATTGATAATACCTCCAGCCAAAAGTCCAGCGAATACTAGCAATAATAATAGTATTCTCACCAGCAACATTAACATAGCAACCGTGCAGGGTATCGGTACTAATAGCAGCaatgagcagcaacaggatctGCATATGATTGATGAGGTAGAGGAGGTGCTGGCTGAAGATGACTTACTTGAGCCGGAAGAacttgacgatgacgatgatgatgatttagaggaaaacgaagatgcagatgatgaagaggacgatgaagaggaTACGGGCATTTCAACGGAGGTCGATGTAGAAGGCTCGTTGGTTAAACCTACGCTCAACAACTGTTTTACAAGTCAAGCTATTAATACGAGTGCGTCAGCGTCGGCTAACAACGTCGCTGCAGTAGTGACAAGTGTCATCCGTATGACTTCAAATCCTTCGCCGCCTGCGTGTTCGCAggcagcagtaacagtaacaAGTAGTAACAGTCAATCGGACTTAGCGTCGTGTGAGGAGATTCCACTGTCTGAGGAAACCGACATCAAACCGACAGTCACACAACGCGACAACGAAGACGAATATGCAAACACTTCGCTAGTTGGCGTTGAAAGATCCTGCAACGATGAACGAAAATTGTTATTTGTTCCCGTTGAAGGACCACACACGAAACCAATATCGACAACGGcgggtagcagcagtagcagtacaaTGGTTACAACGGCTTGCTCAAGCCGGGCATCACCAGATGGCGGAAAGAATTTTAATCAGACCCTACCGTCTACTAGGTCAGTCGCAAGTGCTCAGCAACGCCCAGTTACATGGACTATCGGTGGCTATACTAACACCAACCGACACGGCACAAACAGCAAGCAGGCTCCCCTGTTTCGGGCTCCCAAAAAGTTGGCGGTCAAATTAATCCGTCCCCTTCCGTTAGCTAGTAAAGGTGACAATGTTAATAGCATTGGTGAAGTTCAATGTTCTGTTACCTCTGGCCAAGCAGGAATGTCTGCGAAAAGTGTATCTTCCAACTCGGCCTCCCTGATACTGACCCCTTTGACGCCTGGTACCTCCGAAAGAGCCCCATTACGGGCGAACCCAATTCCGAATAGTATTACCGTCGTGATTCAAAAGACTGAGCACCATCGCCTATCGGGAGTAGATCTGCCATCACACAGCAATGCTGCAGGCAATGAGAGCGGTACATTCCGGGTGATACAATGCGAGGACAGTACCGCTACTTTGGCCACTGATCATCCGCCACCAGTATGTCCTTCCGGTAGTCAAACCCAGCACCAATTGCTCCACATCAAGCAGGAACGTCCCTTGGTGGAAACAGAGCCAAAGAGCCGATCGCCACAAGCGACTCCGTCATCGCCTATTCGTGCAACCTCACTTATTTGTTCCGAGATTTCGGCGCATGATTCCTCTATCGACATCGGCAAGCAGCGCCAACTAGTCGTACACCAGGTGGCACTGAAAGAGGAAACGTTGCATCCACATTCGAAGGTAGCAACCACCCATCATTTGACACCGTCAGTCTCATCCGATGTCAATGTCGACGTTTACAACCTAACGTTTATTGGCAATGCTGGTCACACCGTTTGTGAATCGGTCTtgcagaagaaagaagcgCACGAAGATCGAGAAGCGCCTGATTGTATCAACAAGGAGAGGGTAGCGGAGGCTATGGAATCGGAAAAtcaagacgaagacgaagaaatgCCGGATGGTGGTAATGAAGTGCATATCGTTAACCAGGACAGTAAGGCGTCGGTCGCAGAACTGATACGTGCTGCACGACAACAATTCGGTTGCGCAGGTGGGAGCAACGATCGTAGCTGGCAAATGAAGGTACAGTCTGGTGCAGATGGATTCACTGTGAGTCCTGTGATGGTAGGTGATCTACAGCAACAGGAGGGcgaggacgaagatgaagacATCCATAGTAGCAGCGGCGGAGAGATCGACGAGATTGAAATGAAGCACATTCCTCGCGAAAAGCCGTGTTTTTACAATATTGATGGTAATAAGTCGTCGCGTCAAAACCATTTGGACGAAGCCAGTAAGGAAGAGCTCGTAGGGTTGATTGGTCCGACCAACACAATACCTAAAAAGGAGGGAACATGGGAGTTGCATCTGCGCCATCAACGTATATTGAAAAAAGTGGGCAACAGCGAAATTGATTGTACCAACAGTAACGGAATAACAGCAGCTTGCTCGATGAAGTCGGTTGAGAATGGATTAATTTCTTCTACGCAGTCTCTCGATAAAAAAGAGCAAATTGCATCACGTATTCCGTTATCGCCGACAGTCGAGGATAATGATACGAGTGAATCAGGATCTTCGGTAGTAAAACCGATGAACactgcaaaggaaaaaaagttCTTTGATGAGCCAAAACAACATCCACGCGAATTGGCAATAAAGGCCTGCTCGTCGTCTGATATAAAGGAGAAGGATTTGCTGGAAGCTGGACCATCTAAAACAGTGCTTGGTAGCTCATATGATACAACTAGTCCGAAGAAAGAACCGGGTGTACCTCCACTGCAGTCCTACTCGCAAAAACCCAAAATGCATTTGGAAAGTGATAGAAATCGACAGGCTTCGTACCCTGTTTCCACCGGTATTCTTCGAAGTGCTGAGAAAGATCTGCTTGAAGCGGGACCATCGCACAGTACAGGCAATTTGCAGCAGGATCGTCGTAGCACTGTCGTGCCCCGTGTAATGCCTGTCAATGATTACAATGCTGCCAGCAGTAACGATTGTATGCTACTCACCACTGAACTGGCCAAAACTGTAAAACATAATGAGACCGGCAGTACTGGTCACCCAGTATCGTGGGTGCGCAAGTATGCTGTAGGACAGCAATGTAAAACCGAAGAAAAGGAGGATGGCCTAGTGCAGACAATGACGAATGACACAGATGATGCAAGTCGCGACCACGAGCTGTTAATGACTGCTGGAACAGGTGATATGCAATTATTGGCCGCACCCTTCCGAGAGACTGACGAGTGTCTAGATAGCTATGGGTCCCGCTACATTGGATTAGGTTGCGATGATAACAGTAgcctcaacagcaacagtagcaaatGCAATATAAGTGGTCacgaaagcaacagcaaaatcaACCGCGACGGGAGCACTAAAAGCAACCGCCTCAGTAGCAGTAAtagtaacagcaacagtcgcagcagtatcagcaacagcaatagcaaaagcaacagccGAGACAGCAATGCGACGAAAGGGTCAAGCAACCATAACACGACCGATGGCATCAGTCAGACAATATCGGCTAATTGTGGAGGTGgtaacagtagcagtagagcAGGAGGTACAGGTGGGACGACAGGCAGTAGCTCTAGCCGTCCACCATCGACGGTGCTCTCGTCCGCTTCTTCGACCACTTCGTCCAACTTGGAACGAGCGGTTTCGACGGAAAGTCTTAACATCCGGACGGATGAGAAAATGCCGGCCAAAGGTGAAATCTCTGAGCAGGAGAGCAACGGCGATATGGATATGACATCTTGGAATCGGTTGTACACTGCAGATGACAACATTCCCATCTATCCGAGCTCTTACGATCTTTCAACCGCACAGGAAAGTTGGAATCTTAGCAATCGCCTTCAGCATCAGTCTCACAATCAACTACCCGGTGCCAGTACTAGTGGAACCGTTAGCAACAGTGCACATCACTATTATGTGCCACATGGTGTGGGATTTCGATTTTATGTTCAAAAAAACCAGCAATCTCCTCAACTAGAGCAGCCGCTCTATCGTGCGAATGGATCCGATGGCGAACTGGTagttgcagaagaagagggcgttgaagaggaggaggtggaggaggaagcggtGCAGGATTCAAACGAGCACGGTGCTGTGAAGGACTCAATCGTAGTCAAAGTGGAACAGCATCTGCCGTTTTCTGTCAACGCTGTTAAAGAAGCGAAACTGATGGTGCAAGAGGGAAACCCTAGCGGCCCATCGTACTTTGATATTAGCTCGGCCGgcggccagcaacaacaatccatGCTGGAATCGTTGTCATTACGCGAAgaggcaacagcatcatccaAAGCGGGTGGAAAGCTGCGCGTTTACCGCTGTCAGGAGTGTCCGAAATCGTTTGCCTCCATCAAGCAACGACGGCTGCACGTACACAATGAACATGCGGAGGAGCACCTGCAGTCGACCCAACAGCGTCACCAACATCAGCAAGAACCGCAAACCTTAGTGGACTCAAAGGAAGGCATCATCGGAAGCGTGGATATCGCGATGACTGGTAATTCTTCTTCGGGTACAACCGTCTCATCCTCACCACTCCAGGTAATAATGAACTACTATTGGCTGAAGCAAGAAATTCAACGGAAGTGTGAGGCGACaacaacaggcagcagcagtgcaattATGCTGTCCGCTAGAAGTTCTTCCGCAACCGGCGAGAATGGTGTGGCTGCAGCAGATGGCACCAACGCCGCCATGGGGTTCGTGATGGGTTCCGGCGTCGTTCCAGCCAATCGTAAGCGTACATATGTATGTGGTAAGTGTAAGAAGCAATTCCAACGCTTCAACCAGTTCGATGCACACTTGATGGAACACCCGGTTGAATGCTGCAGCTGTAGTCGCACCTTCAAACAGTGGCGAAATTTCTCCCTGCACGTTAAGCGCCACCTCGGCATCAAGGAACATCAATGCCGGGCATGTGGCAAGCAGTTTGTGATCAAACAGAAACTAGTAGAACATATGCGCATTCATTCCGGCATCGCGCCAATCAAGTGTCAGCAGTGCGGTCGTCAGTTCAAGCGGTTTTCGAATCTTGCCCAGCATCGGAACCGACATCATGTGGCCCGCACGGTTGTGAAAAAAGACTTTGTGTGCCAGCAGTGCGGTGAGGTGTTTCACTCGCAAGCGAAAATGGCATGGCACCAGGAGATTCACGAAAAACAGCCAAAATCGTGTCCATACTGTCGCGAAAAATTTATTCATCGAAACAGTCTGACACGTCACATACGGCTTTCGCACACGGAAAAGTATGCAAAGCTGGAACTCAAGACCGAACCGTGTACTGTGTGTAATCAGCCGTATACGAGAACCAGCATGCGTCGGCATATGGAGACCCATGGACTTGCTGAGGAGCGGCTGGCGTTTGCCTGCAGTATCTGTAATAAGCGGTTCACGACGAACTGGAACCTGAAACAGCATAAGTGGACGCACGCAAACCCAACCATGAAGCCGTATCAGTGCACGCTCTGTCCTAGCGGGTTTGTGCGTCATTCCGATTATGTGACACACGTGAATGCACACCGATCGGTACGACCGTATACTTGCAATCATTGTGGTCGTCAATTCATAAGGAAATATAATTGGATACGGCACACGCGGGAACATGAAAGCGACAAAGGACATCGTTGCGAGGATTGCGGGCGAAAGTTTCATCGCAAGTATTATCTGACTGAGCATCGGCGCATTCACACCGGCGAGCGACCATTTTCCTGCAACATCTGCGGCAAAACGTCTGCCACGAAGACGAATCATAACAAGCATGTACGAATTCATCATGCGCGCGATCCGCTAACCGCCGAGGGATAA
Protein Sequence
MDTLIECPVCTLYLRSGMNLSVHLDTHPKESVIKALVAIAQKRTTPSSVTHSTGGETNVSGGGAILGSTDIFSYLVLGGSGATTTTATTEGGINNLLAESGSKVGRIVPAVGQQQTDALSLNITGRAQNHTPPNAIMYDGSTTVAYTDAPVSATGLSTALLSASSTQPLVSTVGPSAASGIGTLAPNHTIALMNTCEVSGVTTLSHYPANNVTILKREYLQQQSNPLGGANTLGATFLPTAESLEHGSTSSSNNCVAGPASTVVGRAPGGNNAISIYPRYTNELYSGPPPPYSTAISSSVATNTQIMPPAVVADPATPGPGLGGKLTIISRSKTGAYTIDLKNNNIGSLSNNDGSSTTTHQLATYNTLVPFSAIDAPTTTSTVCSVANVSMSAGSTSAAFRSLSLAHQQLRPEAQYTEREDGSFVVFENPKKIVEYRENEAGELTLFEKIVKSPPWTAQVDQPKPMLGGVGQQRHPGQSNDYSPSQQYPQPVIEDSQRSGEVVRSEVSGIASSSTVPSYAVQSMPTFQLLVASSSASNVCPTPALAPPSSLTGTGTAALNNATTSDVITAVTGSASSSITPPTSSSCVANPTEPSPMRKRTASGLKVLSNVKVTTDLSQGIKDIILNLNSRNGSGRTNAIIAASSSLSGSTGIVRGHCSRRSVGEERPVVSCGNELIIPPAKSPANTSNNNSILTSNINIATVQGIGTNSSNEQQQDLHMIDEVEEVLAEDDLLEPEELDDDDDDDLEENEDADDEEDDEEDTGISTEVDVEGSLVKPTLNNCFTSQAINTSASASANNVAAVVTSVIRMTSNPSPPACSQAAVTVTSSNSQSDLASCEEIPLSEETDIKPTVTQRDNEDEYANTSLVGVERSCNDERKLLFVPVEGPHTKPISTTAGSSSSSTMVTTACSSRASPDGGKNFNQTLPSTRSVASAQQRPVTWTIGGYTNTNRHGTNSKQAPLFRAPKKLAVKLIRPLPLASKGDNVNSIGEVQCSVTSGQAGMSAKSVSSNSASLILTPLTPGTSERAPLRANPIPNSITVVIQKTEHHRLSGVDLPSHSNAAGNESGTFRVIQCEDSTATLATDHPPPVCPSGSQTQHQLLHIKQERPLVETEPKSRSPQATPSSPIRATSLICSEISAHDSSIDIGKQRQLVVHQVALKEETLHPHSKVATTHHLTPSVSSDVNVDVYNLTFIGNAGHTVCESVLQKKEAHEDREAPDCINKERVAEAMESENQDEDEEMPDGGNEVHIVNQDSKASVAELIRAARQQFGCAGGSNDRSWQMKVQSGADGFTVSPVMVGDLQQQEGEDEDEDIHSSSGGEIDEIEMKHIPREKPCFYNIDGNKSSRQNHLDEASKEELVGLIGPTNTIPKKEGTWELHLRHQRILKKVGNSEIDCTNSNGITAACSMKSVENGLISSTQSLDKKEQIASRIPLSPTVEDNDTSESGSSVVKPMNTAKEKKFFDEPKQHPRELAIKACSSSDIKEKDLLEAGPSKTVLGSSYDTTSPKKEPGVPPLQSYSQKPKMHLESDRNRQASYPVSTGILRSAEKDLLEAGPSHSTGNLQQDRRSTVVPRVMPVNDYNAASSNDCMLLTTELAKTVKHNETGSTGHPVSWVRKYAVGQQCKTEEKEDGLVQTMTNDTDDASRDHELLMTAGTGDMQLLAAPFRETDECLDSYGSRYIGLGCDDNSSLNSNSSKCNISGHESNSKINRDGSTKSNRLSSSNSNSNSRSSISNSNSKSNSRDSNATKGSSNHNTTDGISQTISANCGGGNSSSRAGGTGGTTGSSSSRPPSTVLSSASSTTSSNLERAVSTESLNIRTDEKMPAKGEISEQESNGDMDMTSWNRLYTADDNIPIYPSSYDLSTAQESWNLSNRLQHQSHNQLPGASTSGTVSNSAHHYYVPHGVGFRFYVQKNQQSPQLEQPLYRANGSDGELVVAEEEGVEEEEVEEEAVQDSNEHGAVKDSIVVKVEQHLPFSVNAVKEAKLMVQEGNPSGPSYFDISSAGGQQQQSMLESLSLREEATASSKAGGKLRVYRCQECPKSFASIKQRRLHVHNEHAEEHLQSTQQRHQHQQEPQTLVDSKEGIIGSVDIAMTGNSSSGTTVSSSPLQVIMNYYWLKQEIQRKCEATTTGSSSAIMLSARSSSATGENGVAAADGTNAAMGFVMGSGVVPANRKRTYVCGKCKKQFQRFNQFDAHLMEHPVECCSCSRTFKQWRNFSLHVKRHLGIKEHQCRACGKQFVIKQKLVEHMRIHSGIAPIKCQQCGRQFKRFSNLAQHRNRHHVARTVVKKDFVCQQCGEVFHSQAKMAWHQEIHEKQPKSCPYCREKFIHRNSLTRHIRLSHTEKYAKLELKTEPCTVCNQPYTRTSMRRHMETHGLAEERLAFACSICNKRFTTNWNLKQHKWTHANPTMKPYQCTLCPSGFVRHSDYVTHVNAHRSVRPYTCNHCGRQFIRKYNWIRHTREHESDKGHRCEDCGRKFHRKYYLTEHRRIHTGERPFSCNICGKTSATKTNHNKHVRIHHARDPLTAEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00098538;
90% Identity
-
80% Identity
-