Basic Information

Gene Symbol
-
Assembly
GCA_002846955.1
Location
NJHH01007613.1:10641-18537[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.8 1.1e+02 3.0 0.0 2 23 6 27 5 27 0.96
2 14 0.0033 0.2 11.7 2.1 1 23 2060 2083 2060 2083 0.92
3 14 0.014 0.9 9.6 1.5 1 23 2209 2231 2209 2231 0.97
4 14 0.0016 0.1 12.6 1.8 2 23 2234 2255 2234 2255 0.96
5 14 0.0022 0.14 12.2 1.1 1 23 2261 2283 2261 2283 0.98
6 14 6.5e-05 0.0041 17.0 4.2 2 23 2290 2311 2289 2312 0.95
7 14 0.0013 0.084 12.9 0.2 1 23 2322 2344 2322 2344 0.97
8 14 0.00015 0.0095 15.9 2.8 2 23 2350 2372 2349 2372 0.96
9 14 0.012 0.75 9.9 0.6 3 23 2386 2405 2385 2405 0.97
10 14 5.5e-05 0.0035 17.2 1.5 1 20 2414 2433 2414 2436 0.91
11 14 0.0075 0.47 10.5 0.6 1 23 2444 2466 2444 2466 0.97
12 14 6.4e-06 0.0004 20.2 3.5 1 23 2472 2494 2472 2494 0.98
13 14 8.1e-05 0.0051 16.7 6.3 1 23 2500 2522 2500 2522 0.98
14 14 0.003 0.19 11.8 4.4 1 23 2528 2550 2528 2551 0.96

Sequence Information

Coding Sequence
ATGGATCCAATGATCGAGTGCCCGGTGTGTACTCTGTACCTCCGTTCCGGGATGAGCCTTTCGGTGCACCTCGATACGCACCCCAAGGAGAGTGTAATTAAGGCACTGGTAGCCCTGGCTCAGAAGCGTACAACTCCGTCGTCGGTCAccccacaacacaacaccggaGGAGAAACCAGCGTTacaggaggaggtggcgcTATTCTAGGATCAACCGACATATTTTCTTACCTTGTgctcggtggcagcggcgctgctactactgccacGGCGGAAGGTGGCATGAATAATTTGCTCGCTGAATCCGGGAACAAAGTTGGTCGTATTGCTCCTGCGgtaggccagcagcaggcggatGCACTGAGCCTGAACATCACGGGCCGTGCTCAAAATCATACCCCACCGAACGCCATCATGTACGATGGATCGACGACGGTCGCTTATACAGATGCGCCAGTAGCAGCGACTGGTCTAAGCACAGCCGTCCTTTCTGCTTCATCCACGCAACCTTTGGTTTCCACGGTTGGGCCTTCCACTACCAACGGGATCGGTACGCTGGCTCCCAACCACACAATTGCACTGATGAACACGTGCGAAGTAAGCGGTGTGACCACGTTGAGCCACTACCCAGCGAACAGTGTGACGATACTGAAGCGCGAATACCTTCAGCAGCAAAGTAATCCGTTAGGAGGTGCCAACACGCTGGGCGCCAGTTTTCTGCCCACAGTCGAGTCATTAGAGCATGGCAACACCAGCTCCTCCACCGCTTGCGTTGCTGGTCCAGCCTCAACGGTTGTTGGGCGTGCGCCTGGTGGCAACAACGCAATCTCCATTTACCCACGCTACACGAACGAGCTATAttcggggccaccaccaccttatAGTACGGCgatctcctcctccgttgccaccaacacacaaatagTGCCACAGGCGGTGGTAGCGGATCCTGCTACATCTGGCCCGGGCCTTGCTGGAAAGcttaccatcatcagcagaagcaAGACTGGCGCCTATACGATCGacttaaaaaacaacaatctcgGTAGCTTAAGCAACAACGACGGTAGCTCTACCACCACCCATCAGCTGGCTACTTACAACACACTCGTACCTTTCTCGGCAATTGAAGCCCCGACAACCACATCGACGGTTTGCAGTGTCGCCAATGTGTCAATGTCGGCCGGTTCAACGTCGGCCGCTTTCCGATCTCTGTCACTAGCGCACCAACAGCTTCGCCCGGAAGCACACTACACCGAGCGAGAGGACGGGAGTTTTGTTGTGTTCGAGAGCCCAAAGAAAATCGTGGAGTATCGAGAAAATGAAGCTGGTGAATTGACGCTGTTCGAGAAGATCGTCAAATCACCACCCTGGACGGCGCAGGTtgaccaaccgaaaccgatgctGGGCGGCGTTGGTACCCTACAGCAGCGTCATCCGGCGCAATCCAACGACTACCTTCCAGCTCAGTCTCAATACCACCAACCGGCTGCTCATGAGAGTCAtgagcagctgcagcttggTGATCGCAAGCACTCCGAGCGGTCCGGAGAAGTGGTACGACCGGAAGGAAGCGGTATAGCACCATCCACCACTGTCCCTTCCTATGGTGTTCAACCGATGCCAACGTTCCAGCTGCTAGTGGCTAGCTCGACTGCACCCAATGCATCCTCCACACCGGCACTAGCGCCATCCTCATCGATGGCCGGTACGGTTACAGCTACGGTAAACAATGCGGCGACATCGGACGTTATTACGGCAGTCACAGGATGCACCAGCTCAAGTACCGCACCACCCACACCTTCCTCCTGCGTTGCTAATCCCATCCAGCCAGTGCTGATACGCAAACGAAACGCCAGTGGATTGAAAGTACTAAGCAACGTCAAAGTGACCACCGATCTCTCCCAGGGTATTAAGGACATAATCTTGAACCTCAATTCACGCAATGGGAGCGGTCGCACCAACGCGATTATTgccgcatcgtcgtcgctgagtGGATCGACGAGCATGGTCCGTGGCCAGTGTAGTCGGCGTTCGGTTGGCGAGGAACGGCCCGTTGTATCCCGTGGAAACGAATTGATCATACCACCAGCCAAAGGTCCAGCGAATACTAGCAAtaataacagcagcagtctcagcagcaacattaacaTAGCTAGCGTGCAGGGTATCCATGCCAACAGCATCAATGAGCGGCAACAGGAGTTGCAAGTGATTGatgaggtggaggaggtgctGGCTGAAGATGATTTACTAGAACCGGAAGAactggacgatgacgacgatgatgatttagaggaaaatgaagatgcagatgatgaagaggacgacgaagaggatACTGGCAATGCATCAACGGCTGTGGATTTGGAAGGCTCGTTGGTTAAACCTACGCTCAAGAACTGTTTTATGGGCCAGGTAATTAATGCAAGTGCGTCAACGTCATCAGCTAACACCGTCGCTGCAGTAGTGACAAGCGTCATCCGCATGACTTCAAACCCTTCGCCACCTGTGTGTTCACAGGCGGCAACGAGTAGAAACAGCCAATCAGACTTAGCGTCGGGTGAGGTGATTCCACTATCCGAACAAACCGACATCAAACCGACAGTCCCACAGcgcgacgacggagacgaatATGCAAATACTGCACTAGTTGGCGTGAAAAGTTCCTGCAACGATGAACGAAAACTGATATTTCTTCCCGTTGAAGGGGCACACGCGAAACCATTATCGACGGcgaccggtagcagcagtagcaatggTACACTGGTTACGGCAACGGCTTGCTCAAGCCGGGCATCGCCAGATGGCGGAAAGCATTCGAATCAGACTCAACCGTCTACTACGTCTGCCGCATGCTCTAAGCAACGTCCAGTCACATGGACCATCGGTGggtacaccaacaccaaccgccACGTCGCCAACAGCAAGCAGGCTCCCCTGTTTCGTGCTCCTAAAAAGCTGGCGGTCAAATTAATCCGTCCCCTTCCGTCGTTAGCTAGTAAAGGTGACAATGGTAGTGGCGTTGGTGAAGTTCAATGTTCCGTCACCGCTGACGGGCAATGTCACGCTGGAATGGCTGCGAAAGGTGTCTCTTCAAACTCCGCCTCCCTGATACTAACTCCATTGACGCCAGGTACCTCCGAACGGGCCCCATTGCGGGCCAATCCAATTCCGAATAGTATTACCGTCGTGATTCAAAAGACTGAGCACCACCGCTTATCGGGAGTAGATCTGCCATCACGTAGCAATGCTGCCGGCGATGACAGCGGTACATTCCGAGTGCTGCAATGCGAGGACAGTACCGCTACATTGCCCACTgatcatccaccaccggtgtgtCCTGCTGGTAGTCAAGTCCAGCACCAATTGCTCCACATCAAGCAGGAACGTCCCTTGGTGGAAACAGAGCCAAAGAGCAGATCGCCACAAGCGACTCCGCCATCGCCTATAGGGGCATCCTCACTCATCTGTTCCGAGATTTCGCCACATGATTCCTCCATCGACATCGGCAAGCAACGCCAGCTCGTCGTACATCAGGTGGCGctgacgaaacgaaaagacGAAACGTTGCATTCGAAGCCAACGACCACCCACCATTTAACGCCGCCAGTCTCATCCGACGTCAATGTCGACGTTTACAACCTGACGTTTATTGGCAATGCGGGTCATACCGTGTGTGAACCGATCTTGCAGAAGAAAGAACCGCACGAAGAGCACGAAGCTCATGATGCAATCCACAAGAAGGAGGACAGGGTACCGGTTGCTATCGAAccagagaaggaagaagaagacgaggaGATGGTGGATGGGAGTAATGAAGCGCGTATCATTCGCCAAGAAAGTAAAGCGTCGGTGGCAGAACTGATACGCGCTGCACGGCAACAGTTCGGTTGCGCAGGTGGAAGCAACGATCGGAGCTGGCAAATGAAGGTACAGTCTGGTGCAGATGGATTCACCGTAAGTCCTGTGATGGTAGGTGATCTACAGCAacaggaggacgaggacgaagatgaagacatgcacagtagcagcggcgGAGAGATCGACGAGATTGACATGAAGCACATTCCTCTCGAGAAGCCGCATTTTTACGATATAGATGCGGATGCTGGTAATGAGCCGCCGCGCCAAACCGATTTGGAAGAGGACAGTAAGAAAGAGCTCGTACTGCTGGTTGAACCGACTAACACGATACCGAAAACAGAAGGTACATGGGAGTTACATCTGCGCCATCAACGGAATGCGCAAAAAGTGTGCAACAGCGCAGTGGATTGTAACAGCCGTGATGGAATATCAGCAACATCAGGACTAATTTCTTCTCCACAGTCCTTCGATAAGAAGGAGCAAATAGCATACCAGCCATCACGTATTTCGTTATCACCGACAGATGAGGATAATGATACGAGTGAATCAGGATCGTCGGTAGTGAAGTCGGAGAACACtgcgaaggaggaaaagttgtTTGATGAGCCACGAAAATTGGCGTTAAAGGGCTGCTCTTCGTCTGATATCAGGGAGAAGGATTTGCTTGAGGCTGGACCATCTAGAACAGTGCTTGGTTGCTCTTATGATGCAATTAGTCCGAAGAAAGAACCGGGGGCTCCTCCACTGCAGTCCTACTCGCAAACACCTAAAATGCATATGGAAGGAGAGGAAATTCGGCACGGCTCCACCGGTATTCTTCGAAGCGTTGAGAAAGACCTGCTCGAAGCGGGACCATCGCATAGTACAGGGAATTTGCAGCAGGAATGCCGTAGCACTGTCGCACCCCGTGCAATGGCTGCGCACGAGCACAATGGTGCCAGCAGTAACGGTTGTATGTTACTCACCAGTGAACTGACTAAAACAGCAAAGCATAATGAGGCAAGCAGTACTGGTCACCCAGTATCTTGGGTGCGCAAGTATGCTGTAGGGCAGCAATGTAAAACCGAAGTAAAGGAGGATGATCTAGTGCAGACAATGGGaaatgacgctgatgatgcaaGCCGTGACCACGAGCTGTTAATGACTGCTGGAACGGGGGATATACAATTGTTGAGCGCACCCTACCGGGAGACTGATGAGTGTCAGGATAGCTATGGGTCCCGGTACATTGGAATTGGTTGCGATGACAACAGTAGCAtcaatagcaacagcagcaaatgcaataGCACCGGCCaggaaagcaacagcagcagcaaaatcaaTCGCGACGGGAGCAGTAAAAGCATCcgcatcagtagcagcaatagtaacagcaacagccgcagcagtatcagcaacagcaatagtaaaagcaacagcagagacAGCAACGCGACGAAAGGCTCTAGCAACCATAACACAACGGATGGCATCAGTCAGACAACATCGgctaatggtggtgctggtggtggtggtggtggcaacggtaACAGTAGAGCAGGAGGTACCGGTGGGATGATGGGCACTATTTCCAGCCGTCCACCGTCAACGGTGCTCTCGTCTGCTTCATCGACCACGTCGTCCAACTTGGAGCGAGCGGTTTCGACGGAAAGCCTTAACATCCGGACGGACGAGAAAATGCCGGCTAAAGGTGAAATCTCTGAGCAGGAGAGCAACGGCGATATGGATATGACATCTTGGAATCGGCTGTACACTGCAGATGAAAACATTCCCATCTATCCGAGCTCTTACGACCTTTCGACCGCCCAGGAAAGCTGGAACCTTAGCAATCGCCTGCAGCATCAGTCTCACAATCATCCACCCGTTGCCAGTACTAGTGGATCCGTTACCAACAATGCACATCACTATTACGTGCCACATGGTGTAGGATTCCGATTTTATGTTCAAAAAAATCAGCAGTCTCCCCAACTAAAGCAGCCGCTTTACAGTGGGAATGGATCCGATGGTGAACTGGTggctgcagaagaagagggcgttgaagaggaggaggtcgAGGATGACGAAGTGCTAGAGTCCAacgaggatgctgctgtgaaGGGCTCGATCGTAGTCAAAGTGGAACAGCATCTGCCGTTTTCTGCCAACGCTGTAAAGGAAGCGAAACTGACGGTGCAAGAGGGAAACCCTAGCGGCCCATCGTATTTCGATATTAActcggtcggtggccagcaacaacaatccatGATGGAATCATTGTCATTGCgggaagaagcaacagcatcatcaaaaGCTGGTAGAAAGGTGCGCGTTTATCGCTGTCAGGAGTGTCCAAAATCGTTCACCTCCATCAAGCAAAGACGGCTGCACATACACGATGAGCATGCGGACGAGCACGTGCAGTCGACACAACCGcgtcagcaacatcagcaagaGCCGCAAACTGTAGTGGACTCAAAGGAGGGCATCATCGGAAGCGTGGATATCGCGATGACCGGTAATTCTTCTTCGAGCACGACCGTCCCATCCCCACCACTACAGGTAATAATGAACTACTACTGGCTGAAGCAAGAAATTCAACGGAAGTGTGAAGCGTCAACGAtcgccagcggcagcagcagcaatgcgaTTATGCTGGCCGCCAGAAACTCCTCCGCAACCGGCGAAAATGGTGTCGTTGGAGCAGATGGTGTTGGCGCCAACGCGACCATGGGCTTCGTGATGGGTTCCGGTGTCGTACCAGCCAGCCGTAAGCGTACATACGTGTGCGGCAAGTGTAAGAAGCAATTCCAACGCTTCAACCAGTTCGATGCACATTTGATGGAACACCCGGCTGAGTGTTTCAGCTGTCCTCGCACCTTCAAACAGTGGCGCAACTTTTCCCTGCACGTTAAGCGCCACCTCGGCATCAAGGAACACCAGTGCCGGGCATGCGGTAAGCAGTTTGTGATCAAACAGAAGCTAGTAGAGCATATGCGCATTCATTCCGGCATCGCGCCAATCAAGTGTCAGCAGTGCGGCCGTCAGTTCAAGCGGTTTTCGAATCTTGCACAGCATCGAAACCGGCATCATGTTGCCCGCACGGTTGTGAAGAAAGACTTTGTGTGCCAGCAGTGCGGTGAGGTGTTTCATTCGCAAGCGAAAATGGCCTGGCACCTGGAGATTCACGAGAAACAGCCGAAATCGTGCCCGTACTGTCGCGAAAAGTTTATTCATCGAAACAGTCTGACACGCCATATACGGCTTTCGCACACGGAAAAGTATGCAAAGCTGGAACTGAAGACCGAACCGTGTACGGTGTGTAATCAGCCGTATACGCGCACTAGCATGCGGCGACATATGGAGACCCATGGACTTGCTGAGGAGCGGCTGGCGTTTGCCTGCAGTATCTGTAACAAGCGGTTTACGACGAACTGGAACCTGAAACAGCATAAGTGGACGCACGCAAACCCAACCATGAAACCGTATCAGTGCACGCTCTGCCCTAGCGGCTTTGTGCGCCATTCCGACTATGTGACACACGTGAACGCACACCGCTCGGTTCGGCCGTATACTTGCAATCACTGTGGTCGTCAATTTATTAGGAAATATAACTGGATACGGCACACGCGGGAACACGAAAGCGACAAAGGGCATCGGTGCGAGGATTGTGGGCGAAAGTTTCATCGCAAGTATTATCTGACTGAGCATCGGCGTATTCACACCGGTGAGCGACCATTTTCCTGCAACATCTGCGGCAAAACGTCTGCGACGAAGACGAATCATAACAAGCATGTGCGGATTCACCATGCGCGCGATCCGCTAACTGCCGAGGGCTAA
Protein Sequence
MDPMIECPVCTLYLRSGMSLSVHLDTHPKESVIKALVALAQKRTTPSSVTPQHNTGGETSVTGGGGAILGSTDIFSYLVLGGSGAATTATAEGGMNNLLAESGNKVGRIAPAVGQQQADALSLNITGRAQNHTPPNAIMYDGSTTVAYTDAPVAATGLSTAVLSASSTQPLVSTVGPSTTNGIGTLAPNHTIALMNTCEVSGVTTLSHYPANSVTILKREYLQQQSNPLGGANTLGASFLPTVESLEHGNTSSSTACVAGPASTVVGRAPGGNNAISIYPRYTNELYSGPPPPYSTAISSSVATNTQIVPQAVVADPATSGPGLAGKLTIISRSKTGAYTIDLKNNNLGSLSNNDGSSTTTHQLATYNTLVPFSAIEAPTTTSTVCSVANVSMSAGSTSAAFRSLSLAHQQLRPEAHYTEREDGSFVVFESPKKIVEYRENEAGELTLFEKIVKSPPWTAQVDQPKPMLGGVGTLQQRHPAQSNDYLPAQSQYHQPAAHESHEQLQLGDRKHSERSGEVVRPEGSGIAPSTTVPSYGVQPMPTFQLLVASSTAPNASSTPALAPSSSMAGTVTATVNNAATSDVITAVTGCTSSSTAPPTPSSCVANPIQPVLIRKRNASGLKVLSNVKVTTDLSQGIKDIILNLNSRNGSGRTNAIIAASSSLSGSTSMVRGQCSRRSVGEERPVVSRGNELIIPPAKGPANTSNNNSSSLSSNINIASVQGIHANSINERQQELQVIDEVEEVLAEDDLLEPEELDDDDDDDLEENEDADDEEDDEEDTGNASTAVDLEGSLVKPTLKNCFMGQVINASASTSSANTVAAVVTSVIRMTSNPSPPVCSQAATSRNSQSDLASGEVIPLSEQTDIKPTVPQRDDGDEYANTALVGVKSSCNDERKLIFLPVEGAHAKPLSTATGSSSSNGTLVTATACSSRASPDGGKHSNQTQPSTTSAACSKQRPVTWTIGGYTNTNRHVANSKQAPLFRAPKKLAVKLIRPLPSLASKGDNGSGVGEVQCSVTADGQCHAGMAAKGVSSNSASLILTPLTPGTSERAPLRANPIPNSITVVIQKTEHHRLSGVDLPSRSNAAGDDSGTFRVLQCEDSTATLPTDHPPPVCPAGSQVQHQLLHIKQERPLVETEPKSRSPQATPPSPIGASSLICSEISPHDSSIDIGKQRQLVVHQVALTKRKDETLHSKPTTTHHLTPPVSSDVNVDVYNLTFIGNAGHTVCEPILQKKEPHEEHEAHDAIHKKEDRVPVAIEPEKEEEDEEMVDGSNEARIIRQESKASVAELIRAARQQFGCAGGSNDRSWQMKVQSGADGFTVSPVMVGDLQQQEDEDEDEDMHSSSGGEIDEIDMKHIPLEKPHFYDIDADAGNEPPRQTDLEEDSKKELVLLVEPTNTIPKTEGTWELHLRHQRNAQKVCNSAVDCNSRDGISATSGLISSPQSFDKKEQIAYQPSRISLSPTDEDNDTSESGSSVVKSENTAKEEKLFDEPRKLALKGCSSSDIREKDLLEAGPSRTVLGCSYDAISPKKEPGAPPLQSYSQTPKMHMEGEEIRHGSTGILRSVEKDLLEAGPSHSTGNLQQECRSTVAPRAMAAHEHNGASSNGCMLLTSELTKTAKHNEASSTGHPVSWVRKYAVGQQCKTEVKEDDLVQTMGNDADDASRDHELLMTAGTGDIQLLSAPYRETDECQDSYGSRYIGIGCDDNSSINSNSSKCNSTGQESNSSSKINRDGSSKSIRISSSNSNSNSRSSISNSNSKSNSRDSNATKGSSNHNTTDGISQTTSANGGAGGGGGGNGNSRAGGTGGMMGTISSRPPSTVLSSASSTTSSNLERAVSTESLNIRTDEKMPAKGEISEQESNGDMDMTSWNRLYTADENIPIYPSSYDLSTAQESWNLSNRLQHQSHNHPPVASTSGSVTNNAHHYYVPHGVGFRFYVQKNQQSPQLKQPLYSGNGSDGELVAAEEEGVEEEEVEDDEVLESNEDAAVKGSIVVKVEQHLPFSANAVKEAKLTVQEGNPSGPSYFDINSVGGQQQQSMMESLSLREEATASSKAGRKVRVYRCQECPKSFTSIKQRRLHIHDEHADEHVQSTQPRQQHQQEPQTVVDSKEGIIGSVDIAMTGNSSSSTTVPSPPLQVIMNYYWLKQEIQRKCEASTIASGSSSNAIMLAARNSSATGENGVVGADGVGANATMGFVMGSGVVPASRKRTYVCGKCKKQFQRFNQFDAHLMEHPAECFSCPRTFKQWRNFSLHVKRHLGIKEHQCRACGKQFVIKQKLVEHMRIHSGIAPIKCQQCGRQFKRFSNLAQHRNRHHVARTVVKKDFVCQQCGEVFHSQAKMAWHLEIHEKQPKSCPYCREKFIHRNSLTRHIRLSHTEKYAKLELKTEPCTVCNQPYTRTSMRRHMETHGLAEERLAFACSICNKRFTTNWNLKQHKWTHANPTMKPYQCTLCPSGFVRHSDYVTHVNAHRSVRPYTCNHCGRQFIRKYNWIRHTREHESDKGHRCEDCGRKFHRKYYLTEHRRIHTGERPFSCNICGKTSATKTNHNKHVRIHHARDPLTAEG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00098538;
90% Identity
-
80% Identity
-