Adar003309.1
Basic Information
- Insect
- Anopheles darlingi
- Gene Symbol
- -
- Assembly
- GCA_000211455.3
- Location
- scaffold:12970-17463[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7.3e-12 1.9e-08 33.1 0.0 2 39 598 636 597 640 0.90 2 4 1.1e-12 3e-09 35.7 0.1 2 39 652 689 651 692 0.94 3 4 1.7e-18 4.5e-15 54.3 0.0 3 45 708 751 706 751 0.97 4 4 1.2e-17 3.1e-14 51.7 0.0 1 43 758 801 758 802 0.96
Sequence Information
- Coding Sequence
- ATGATCCTAAATCTGGTCGATACACTGAGTTTATTACGGACCGCGGAACAGCTTAAAATTAAGGGTTTATGTGAAGTGGGGGAACCACAGTACGAGCAGGACTACTCGCCCGCAGCCAAACGCTACAAACCGTACCGATCCCGATCGCCACCGGACAATCGGAACCATCATCATCATCAGCAACCTCCTCCTCCCCCTCCGCCACCGGGATCTGGACCCTACGGCGGCGGCAGCGGcggtggtagtggtagcggcggtagtggaggaccttcatcaggtgccggtggtggtggtggtggtggtggccgtggggccagtggtggtAGCTCTTCGCAAGCGCCCGGTTACAGTGAAAACGGCAAAAACAGTGGCAGTTCCGGCCGAGGGCGATCCGGCGGCAGCAGCAGTAGCACCAGTACCAGCAATTACCATCTGCCTTCCACCCACCAGCAGCAGGCGCATCTGCAGCATCCTCTCGCACACCTGCACGGTGTTGAACGGGGTCCACCAACCTCGGCAACGATCGCCAGCACATCGTCGAGCCGCCTCGGTGAGGACGATGGATCGTCGGTGTTAGTGCTAGAATCGCACGATCTCACCACCACCTCTAGGAGGGGTAGCAGTAGCAGCAGCAGTAGTAGAAAAGCAGTTTCCCCTGTGAAGGATAAGCACCACCACCTGCAGCAACAGCAGCACCATCTGGCgcaccatccctcgcatcatctgcatcgacatcaccacctgcagcagcatcatcaccatcatcaACAGCCACCGGGGCACCCGCATCATTCGATCGCCAGCAAAATGGCCAGCCTAGGCATGGGCGTTGGAATAAATGGTTCCGTTATGGGCGTACCAATGGGTTACTTGGATTTTGCACCGGAACCACCAGCCCCGACCGCAACGCCAGTGACAGAACATGTGGACATTAATTGTGCGCCTAGCCACGATACCCGTGATCTGTCCAGTAAGTATTCTGTGCCAAACGATGGTGATTTACGAGTGAAATTCGAAACGTTACGTTCACTAGATCACCCGCCGAATGCGGTGcaactggacaatcaacaagtcgtcagccaccagcagcaacagcaacagcaacagcaacagcaacaacagcagcagcaacagcaacaacagcaacagcaacaacagcagcagcagcagcagcagcagcttcaccatcacgcaacagcacgcaacagcaagcgcaacagcaactattgcatcagcagcaacagcatttactgcaacagcagcagcagcagcagcagcaacaacaacaacaacaagcgcatagacaaacgcctcagccaccggccgttcagcagcagcagcaacagcagaatgagctgcagcgacactcaccaccacacatgcagcagcaacagcaacaacagcagcatCCAGCATCCCGAGAACTTGGTAACGAGCGGTGGTGGCGGTGGTGGTGGATCCGTCACACCGAATCCTGCCGTAGGCAATACCAGCAATGGTGGGGAAGAGCTAGAACCGAGACTGAGTTTAAAACAGGAAATTATAACCGATGCTGAGCAGCAGCAAACGATGGAGGTCGAGCAGGATCAATCGTCGATGCATGGCAGCAGTGGCATGGTGGTGACGCCTGAGATATCGGGCATTATGAATCAAAGCCAGATGAGCGATATGTACCAGTCGGACGCAAGTGAAGACTCCAAGGTTGGCATCCTGGACGGATCTTCGATCCAGTACACCAATTTGACGAGCCCGAACGAAGCGAAAACCCCGACCGGTCCGAAAACCTGGACGGCCGAAGATATGGAATCGGCACTGGAAGCGTTACGTACTCACAACATGAGCTTGACGAAGGCATCCGCAACGTACGGCATTCCCTCGACGACCCTTTGGCAGCGTGCTCATCGCCTTGGCATTGACACACCGAAGAAGGAGGGTCCCTCGAAGACGTGGAACGAGGATTCGCTAAACAGTGCGCTGGAGGCCCTCCGCACGGGCACGATTTCGGCTAACAAGGCTTCGAAAGCGTTCGGTATCCCGTCCTCAACGCTATACAAGATAGCACGCCGCGAAGGTATCCGGCTGGCCGCCCCGTTTAATGCCGCCCCTACCACCTGGTCCGCCGAGGATTTGGACCGTGCCTTGGAAGCGATCCGTGCCGGACAGACATCGGTACAGAAGGCGAGTACCGAGTTCGGCATTCCGACCGGTACGCTCTATGGGCGCTGCAAACGCGAAGGCATCGAGCTGTCACGCTCCAACCCTACGCCATGGTCGGAGGACGCCATGATGGAAGCCTTAGAGTCAGTAAAACAGGGACATATGTCGATCAATCAAGCCGCCATCCACTATAACCTACCGTACAGCTCACTGTATGGTCGGTTCAAACGCGGCAAATACGATACGCCCAGTTCGGGCGGCGGTGGCGGTGGTGGCAGTTCGACAAGCgctgctgctgctgctgctgctgctACGGGGGGCGGTAGTGCTGGCGGTGGCGGAAATACTGGAGCACCCGGCGCCCCCAGTAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAGATAGAACCACAGCATAATGACCATAGTCCAGaaaatacggtaaattacagttattattaa
- Protein Sequence
- MILNLVDTLSLLRTAEQLKIKGLCEVGEPQYEQDYSPAAKRYKPYRSRSPPDNRNHHHHQQPPPPPPPPGSGPYGGGSGGGSGSGGSGGPSSGAGGGGGGGGRGASGGSSSQAPGYSENGKNSGSSGRGRSGGSSSSTSTSNYHLPSTHQQQAHLQHPLAHLHGVERGPPTSATIASTSSSRLGEDDGSSVLVLESHDLTTTSRRGSSSSSSSRKAVSPVKDKHHHLQQQQHHLAHHPSHHLHRHHHLQQHHHHHQQPPGHPHHSIASKMASLGMGVGINGSVMGVPMGYLDFAPEPPAPTATPVTEHVDINCAPSHDTRDLSSKYSVPNDGDLRVKFETLRSLDHPPNAVQLDNQQVVSHQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQLHHHATARNSKRNSNYCISSNSIYCNSSSSSSSNNNNNKRIDKRLSHRPFSSSSNSRMSCSDTHHHTCSSNSNNSSIQHPENLVTSGGGGGGGSVTPNPAVGNTSNGGEELEPRLSLKQEIITDAEQQQTMEVEQDQSSMHGSSGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSIQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGGSSTSAAAAAAAATGGGSAGGGGNTGAPGAPSNVGGSPQMEFKIEPQHNDHSPENTVNYSYY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00092752; iTF_00092253; iTF_00092091;
- 90% Identity
- -
- 80% Identity
- -