Aaqu000027.1
Basic Information
- Insect
- Anopheles aquasalis
- Gene Symbol
- -
- Assembly
- GCA_002846955.1
- Location
- NJHH01001601.1:43283-54363[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.6e-11 2.8e-08 32.8 0.0 2 39 624 662 623 666 0.90 2 4 2.4e-12 4.3e-09 35.4 0.1 2 39 678 715 677 718 0.94 3 4 3.7e-18 6.6e-15 54.1 0.0 3 45 734 777 732 777 0.97 4 4 2.5e-17 4.5e-14 51.4 0.0 1 43 784 827 784 828 0.96
Sequence Information
- Coding Sequence
- ATGGCTGTCTCTTTCATGGTTGGTGGCATGAGTTTATTGCGGACCGCGGAACAGCTTAAAATTAAGGGTTTGTGTGAGGTAGGGGAACCACAGTACGAGCAGGACTACTCACCCGCAGCCAAACGGTACAAACCgtaccgatcgcgatcaccgcCGGACAAtcggaaccatcatcaccatcagcaacctcctcctcctcctccgccaccgggATCAGGACCCtacggaggcggcggcggcggcggcggtggtggtagtagtggtagtggcggtagtggaggcggtggtggaccTTCatcaggtggtggtggccgtggaggcagtgccagtggtggtggctcttCTTCGCAAGCGCCCGGTTACAGTGAAAACGGCAAAAACAGTGGCAGCTCCGGTCGAGGGCGttccggcggcagcagcagcaacagcagcagtaccagcaacTACCATCTGCCTtccccacagcagcagcagcagcacctgcagcatCCTCTCGCACACCTGCACGGTGTCGAACGGGGCCCACCAACCTCGGCAACGATCGCCGGTGGTACATCGAGCCGCCTCGTCGGCGAGGACGAtggatcgtcgtcggtgttaGTGCTAGAATCGCACgatctcaccaccacctcccggaggagtagtagcagcggtggcggtagcagtagtagaaaAGCCGTTTCCCCTGTGAAGGataaacagcaccagcacctgcagcaccatctGGCGCACCATCCTGCGCATCATCTGCACCGGcatcacctgcagcagcagcagcagcaacatcatcatcatcatcaccatcatcaacagccaCCGGGGCAGCCGCATCATTCGATCGCCAGCAAAATGGCCAGCCTAGGCATGGGCGTTGGAATAAACGGTTCCGTTATGGGCGTACCAATGGGTTACCTGGACTttgcaccggaaccaccagccCCGACCGCAACGCCGGTGACAGAACATGTGGACATTAATTGTGCGCCTAGCCACGATACCCGTGATCTGTCCAATTCTGTGCCAAACGATGGTGATTTACGAGTGAAATTCGAAACGTTACGTTCACTAGATCATCCCCCGAATGCGGTGCAACTGGACAATCAACAAGTCgtcagccaccagcagcagcaggcgcagcaacaacagcagcagcaacagcagcttcaccatcaacagcaacagcaagcgcagcaacagcaactattgcaccagcagcaacagcatttactgcaacagcagcagcagcagcagcagcaacaacaacagcaacaagccCATAGACAAACGCCTCAGCCACCagccgttcagcagcagcagcagcagcagaatgagCTCCAGCGACACTCACCACCacacatgcagcagcaacagcaacagcagcatgtaATGTTGATTgatccacaacaacaacagcaccacccgACCACCCATAGTCCTGCTTCGAGTGTGTCGTCCTCATCTTCCAGCCAGCATCCCGAGAACCTGgtaaccggtggtggtggtgctggtggcggcggcggcggcggcggcggtggtggtggttccgtcaCACCGAATCCGAACACCAGCAATGGTGGGGAAGAGCTAGAGCCACCGAGACTGAGTTTAAAACAGGAAATTATAACCgatgctgagcagcagcaaacgatggaggTCGAGCAGGACCAATCGTCGATGCATGGCAGCAGTGGCATGGTGGTGACGCCTGAGATATCGGGCATTATGAACCAAAGCCAGATGAGCGATATGTACCAGTCGGATGCAAGTGAAGACTCCAAGGTTGGCATCCTGGACGGGTCGTCGATCCAGTACACCAATTTGACGAGCccgaacgaagcaaaaacccCGACGGGTCCGAAAACATGGACGGCCGAAGATATGGAATCAGCGCTGGAAGCGTTACGTACTCACAACATGAGCTTGACGAAGGCATCCGCAACGTACGGCATTCCCTCGACGACCCTTTGGCAGCGTGCTCATCGCCTTGGCATTGACACACCGAAGAAGGAGGGTCCCTCGAAGACGTGGAACGAGGATTCGCTAAACAGTGCACTGGAGGCCCTCCGTACGGGCACGATTTCCGCGAACAAGGCTTCGAAAGCGTTCGGTATCCCGTCCTCAACGCTATACAAGATAGCGCGCCGCGAAGGCATCCGGCTGGCCGCCCCGTTCAATGCGGCCCCAACCACCTGGTCCGCCGAGGATTTGGACCGTGCCTTGGAAGCGATCCGTGCCGGACAGACATCGGTACAGAAGGCTAGTACCGAGTTTGGCATTCCAACCGGTACGCTCTATGGGCGCTGCAAGCGCGAAGGCATCGAGCTGTCACGCTCTAACCCTACGCCATGGTCGGAGGACGCCATGATGGAAGCCTTAGAGTCAGTAAAACAGGGACACATGTCGATCAATCAAGCCGCCATCCACTATAACCTACCGTACAGCTCACTGTATGGCCGGTTCAAACGCGGCAAATACGATACGCCCAGTTcgggcggcggtggcggtggtggcagttcgacaagtgctgctgctgctgctgcagccggtggcggtagtgctggtgctggtggaaataCTGGAACACCTGGCGCCGCGAGTAATGTTGGCGGTAGTCCCCAGATGGAGTTTAAGATAGAGCCACAGCATAATGACCATAGTCCAGAAAATACGCAACATTACAATCCTGCACTATCGGCATCGTCGACGCCAACGAGCAATActccaacacaacaacaacagcagcagcagcagcaacagcagcagcaacaacagcaacaacagcaacaacagcagcagcagcagcaaattgctCATCATTTAGTCCAACCCGCTCCAACGCCGGTCAGCATTCACATTATTGATGCCGCTCACCATCATCTCACTCatccgcaccagcagctccatcagcagcaggtgattgcgcagcatcagccgcagccgcaacatcatcatctgcatcatcagcCGCAGCTGATCCAGCATCACATCATTCCGCAGCAACATCACATCATCTACCAGCAGCCGTTGCaaccgatccagcagcagccccagtaCCATCCTATGTATCACATCATCAAGCAGGAAAACGACAGAAGTTGA
- Protein Sequence
- MAVSFMVGGMSLLRTAEQLKIKGLCEVGEPQYEQDYSPAAKRYKPYRSRSPPDNRNHHHHQQPPPPPPPPGSGPYGGGGGGGGGGSSGSGGSGGGGGPSSGGGGRGGSASGGGSSSQAPGYSENGKNSGSSGRGRSGGSSSNSSSTSNYHLPSPQQQQQHLQHPLAHLHGVERGPPTSATIAGGTSSRLVGEDDGSSSVLVLESHDLTTTSRRSSSSGGGSSSRKAVSPVKDKQHQHLQHHLAHHPAHHLHRHHLQQQQQQHHHHHHHHQQPPGQPHHSIASKMASLGMGVGINGSVMGVPMGYLDFAPEPPAPTATPVTEHVDINCAPSHDTRDLSNSVPNDGDLRVKFETLRSLDHPPNAVQLDNQQVVSHQQQQAQQQQQQQQQLHHQQQQQAQQQQLLHQQQQHLLQQQQQQQQQQQQQQAHRQTPQPPAVQQQQQQQNELQRHSPPHMQQQQQQQHVMLIDPQQQQHHPTTHSPASSVSSSSSSQHPENLVTGGGGAGGGGGGGGGGGGSVTPNPNTSNGGEELEPPRLSLKQEIITDAEQQQTMEVEQDQSSMHGSSGMVVTPEISGIMNQSQMSDMYQSDASEDSKVGILDGSSIQYTNLTSPNEAKTPTGPKTWTAEDMESALEALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPSSGGGGGGGSSTSAAAAAAAGGGSAGAGGNTGTPGAASNVGGSPQMEFKIEPQHNDHSPENTQHYNPALSASSTPTSNTPTQQQQQQQQQQQQQQQQQQQQQQQQQQIAHHLVQPAPTPVSIHIIDAAHHHLTHPHQQLHQQQVIAQHQPQPQHHHLHHQPQLIQHHIIPQQHHIIYQQPLQPIQQQPQYHPMYHIIKQENDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00098339;
- 90% Identity
- -
- 80% Identity
- -