Acol006383.1
Basic Information
- Insect
- Anopheles coluzzii
- Gene Symbol
- -
- Assembly
- GCA_016097175.1
- Location
- CM027928.1:21957129-21959789[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 4.5 2.3e+02 2.2 0.1 2 23 261 283 260 283 0.93 2 13 0.23 12 6.3 1.6 1 23 289 311 289 311 0.97 3 13 0.0024 0.13 12.5 0.2 1 19 315 333 315 335 0.96 4 13 0.00049 0.026 14.7 1.5 1 23 340 362 340 362 0.98 5 13 4.9e-06 0.00026 21.0 2.0 2 22 371 391 370 391 0.94 6 13 6.6e-05 0.0035 17.4 0.6 2 23 435 457 434 457 0.93 7 13 0.075 3.9 7.8 2.0 1 23 465 487 465 487 0.91 8 13 0.0002 0.01 15.9 0.8 2 23 505 527 504 527 0.92 9 13 0.00082 0.043 14.0 5.1 1 23 534 557 534 557 0.93 10 13 0.0012 0.065 13.4 3.2 1 23 564 586 564 586 0.97 11 13 2.5e-05 0.0013 18.7 2.5 1 23 592 614 592 614 0.97 12 13 3.9e-05 0.0021 18.1 1.0 1 23 620 642 620 642 0.97 13 13 5.1e-05 0.0027 17.8 0.3 1 23 648 671 648 671 0.97
Sequence Information
- Coding Sequence
- ATGCCGCCGGAAACTGGGCCAACGTACGAGCTATCGAACGGTACCTGCCGTTTGTGTTTAGAGCACAAGGAAGAACTGATCCCTCTCGAATGCGCTCTGTCGGAAACGGAGCTTATCAACGTCATCGATTGCTTCCTCAAGATAGACATAACCGACAATTGGCCTTTCCAGAACGTATGTGATGATTGTGTCATGCAGGTTCGGTTGATTGAAAAATTACGCGCCCATTTCGATGAGAGGAATCGTATTTTCGATGTGCTATGGACACAATACAAGCGAATACACATGCAAGCCGATGGGGCGGGTGGTAGTAGTAAAAAGAAATTGTCCAAAACAGAGGAGAGCAACGCCAACTCTGGCTACGTCATCGAGGGAATGGTGATAGAGAAAACGGAAGTGGAGATACTGCCACCGGACATGTTGCTGAAGGCAGAGGCTGGAACTGAACAGTGTGGCGCCGTCATCAAACAGGAAGAGAACGAAGAAGAGGACCATTTGGTGGAGGAGCTGGTGTACGAGGAGCTAACGCTGGACGAAACGGAACTCGACGAGGGTGAGATCATAGAAGAGGACAAGGATACGCTGGAGGGTGAACATGAGAGCGAAATGGTAGAGGAACACATCATGGAACATGAGGAAGACGTGATTGCGGCAGGGGACGAATCGGACGACCAAATTGAGCACCAGCTGTACGAGATTGCAGACAGTGAGGACAGTGGGCAGCAAAAACAGCAGCAGGAGCAACAGCAGGATGACTGTTATTACGACGAAACGGTCAGCCGATGCTACATCTGCATGGAAACGCTGGAATCGGAGAGCGTGCTCCAAGAGCACCTAGGGACGGTGCATCTTAAATTGCTCCCATTTCACTGCGACAAATGTTTGCAGTACTATCGCACAATCGACGAGGTAAATCAGCATCTGATCTCGCACGAGTATCCGTTCGTTTGCATGTACTGCCCGCGCAGGTACAGCTCCGAGCGGCAGCTAGAGAACCACAACATAGACTGCAACACCTACCGGTGCCTGTACTGCCCGGCGGAGTTCGAGGTGCTGTCCCACCTGAACACACACAAGCGGCAACATGCGGCCCAGCTGCGGGGCAAGCTAAAGTGCAAGGCTTGCGGCCGTCAGTTCACACAGTCGTCCCATCTGAAGCGCCATCTACGGTCGGGAAGCTGTGCCGGCTTGAAAGAACGCGGACCAAAGCGCAAGTACATGCGTAGACAGGGGCAAGAAATTCCGACCTCCCCTAGAGGCGGCGACCAATGCAGCAAGGAGCCGCAGAACAAAAATCTACTCTACTGTCAGGTGTGCGATCGGAAGTTTGTCAGCAACTCCTACCTGGCGCGGCACTTCGAGCGGGACCATTCCGAGCTACGGTTTCCCCTGTTTCCCTGTGACGTCTGTACGAAGAAGTTTACCTCGTTCGAAAAGTCCGTCCTGCACCGACGGTATCACCGCCGGCAGCCAGCCATCAAACCGAAGGAGCTAAAGAAACCGAAGGAAACGGTGTGCAAAATCTGCGGCAAAGAGTTCCGCGTCGACCATCAGCTGCTGCGCCATCTGACGGAGGAGCATTCGCTCGCGCTCGAGCTGTTCCAGTGCGACCAGTGTCCGCGCAAGTTTTCGACCGAGTTCAAGCTGCGCAAGCACCATTACAACAGCCACCGGGAGAACAAGACGCTGTACGTTTGCTCGCACTGCGGGCAGAAGTTCGAGAAGAAGCTGACGCTGAAGGACCACGAAACGAAGCACCTGGGTATGCCGGCCTATCGGTGCGCGGTGTGCGACAAGACGTTCATCCACAAGCACAGCCTGGACCGGCACGCGCTCGTGCACAGTGACGAGAAGCAGTTCGCGTGCGAGTTTTGCGCGAAAACGTTCAAGCGCAACACCACGCTGGTGATCCACCGGCGGATACACACCGGGGAGAAGCCGTACCAGTGCGAACCGTGCGGTATGCGGTTCATCGATTCCAGCACGCTGATCAAACACCGGCAGCGGGCGCACATGAAAGCGGAGTGCATGCCGTTGAAACAGGAACAAGGGCAGTAG
- Protein Sequence
- MPPETGPTYELSNGTCRLCLEHKEELIPLECALSETELINVIDCFLKIDITDNWPFQNVCDDCVMQVRLIEKLRAHFDERNRIFDVLWTQYKRIHMQADGAGGSSKKKLSKTEESNANSGYVIEGMVIEKTEVEILPPDMLLKAEAGTEQCGAVIKQEENEEEDHLVEELVYEELTLDETELDEGEIIEEDKDTLEGEHESEMVEEHIMEHEEDVIAAGDESDDQIEHQLYEIADSEDSGQQKQQQEQQQDDCYYDETVSRCYICMETLESESVLQEHLGTVHLKLLPFHCDKCLQYYRTIDEVNQHLISHEYPFVCMYCPRRYSSERQLENHNIDCNTYRCLYCPAEFEVLSHLNTHKRQHAAQLRGKLKCKACGRQFTQSSHLKRHLRSGSCAGLKERGPKRKYMRRQGQEIPTSPRGGDQCSKEPQNKNLLYCQVCDRKFVSNSYLARHFERDHSELRFPLFPCDVCTKKFTSFEKSVLHRRYHRRQPAIKPKELKKPKETVCKICGKEFRVDHQLLRHLTEEHSLALELFQCDQCPRKFSTEFKLRKHHYNSHRENKTLYVCSHCGQKFEKKLTLKDHETKHLGMPAYRCAVCDKTFIHKHSLDRHALVHSDEKQFACEFCAKTFKRNTTLVIHRRIHTGEKPYQCEPCGMRFIDSSTLIKHRQRAHMKAECMPLKQEQGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00102531; iTF_00101124; iTF_00107141; iTF_00104563;
- 90% Identity
- iTF_00102531; iTF_00101124; iTF_00107141; iTF_00104563;
- 80% Identity
- -