Basic Information

Gene Symbol
PAXBP1
Assembly
GCA_000349165.1
Location
KB702526:9161-22841[+]

Transcription Factor Domain

TF Family
GCFC
Domain
GCFC domain
PFAM
PF07842
TF Group
Unclassified Structure
Description
This entry describes a domain found in a number of GC-rich sequence DNA-binding factor proteins and homologues [4, 5], as well as in a number of other proteins including Tuftelin-interacting protein 11 [1]. While the function of the domain is unknown, some of the proteins it is found in are reported to be involved in pre-mRNA splicing [1, 2]. This domain is also found in Sip1, a septin interacting protein [3].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 2 5.3e-36 2.9e-32 111.7 0.1 3 271 690 898 688 900 0.94
2 2 0.025 1.4e+02 1.2 0.0 51 126 1166 1239 1160 1240 0.86

Sequence Information

Coding Sequence
ATGTCGCTTTTTCGGAAACCCAAAAAACCCATCCAGCGGCGCGTTTTTAGCGGCTACGATGATGAGGACGAGGAAAACTACGGCACTTCGGCGAAGGATTCGACCCACCCGAATAGTGCCAGCAGCGGCAACGGGACACACAATGGTAGCGGCATCAATCGATCAACACCGATGGACGTTGACCCCGTGCCGGAAGGTCCGGCAATAGCAGCGGTCATACCGTCCTCCTCCTCGGAACAGCACCGCAAGCGAAAAGAGCACCGTGCTGCTGCTGCTGCGGACTCTGGCTCAAAGGGCTCGTTGAAAGCGAACCCGAGCACCAAACCCTCTTTGCTTAGTTTCGACGACGAAGAGGAGGGCGGTGAAGTTTTCCAAGTGAAAAAGTCCTCCCACAGCAAGAAGGTGATGAAAACGCTCGACAAGGAACGGCGCCGGAAGCGACATCTGGAAAAAAGCAATGGCACACAGACCGGAGGTCCGGGATCGGGTGGAACCGGCACGATGGACCAGGGCAAACCAACAAACGCTGCTGCCCGGAAGCACCAGTCCTCGACGCCACCGTCGACCGTGGTGGGGTCGGCTTACGGCAACGACAGTAATGATAAGATAAAAAGAGAAAAGTGTGAAAATTCTAGCTCTAATATCCAAACAGAAATACGCACAGACGACTTTGTGCTGGTGGTCAAGAAATCGGACCCTGAGAATATGATCCTAAACGGACGGGCGGCACTGTGCGCCGGACGGAACGATATGTCCTCGGAGGATGACGGGAACGAGGAAGAGGAATCGGAGGGTCGGATGCAGCATCATCATCGGTTTGCGAAACCGCAGGATAACTTCAAGATGTGTCTCGAAAACGGTGTCATACCGGATGCGGCCATGATTCATGCCGCACGAAAGCGACGCCAGAAAGCACGCGAGCAAGGCGAATTTATTCCTGTTGAGGAACCGAAGGAAGAGAAGACCAAAAAGCGAACCGTGCAAGAGGATGGCGATGGCGATGGATCCGATGAGGATGACGATCGAATCGACATGTCGGCCATAACCGGTGCCAAAGAGCGAGAAGAACGGCGGGAACAGTTTTATGCCGTACAGCGTGAAGATTCCGATGCGGAGGATTCCGACGTGGAAACGAAGGAATGGGAAAATCAACAAATACGCAAAGGTGTCACCGGTGCACAGCTGGTATCCGCGCAGCAAGAATCCGTCATATCGCAGTACTTAATTGGCAGCAGCTTTAGTCAAACGTTCCAGAATAAATCCACCCTACTGCTGGATGATCAGCGGACTGGCGGCGATGGAACCAGTGAGTTCCGTGGTCTATCAACAGCTGCCTTACTCGAGAAAGCGTACGCAGCATCTAGCGGTATTCGATTGTCTGGTACCGGTGGTAGCAGCAAACGATCGCAAGCATCAAGCAACAACAGTGGACCGAAATCGTCCGACACGAAACCAACTGGTCCACGGATGCCTCAGCAGATTCTTGCGCAGCTAACGGAACGGCATCGTACAACGGCCGAATTGAACCGAAAGCACGACGAAGACATCGATCACATCACCCAGGAGGTAAAGCTGCTCCAGATGGATCATCTGGCCTGTGAGCAGAAGGCTCCGGTTGCGGCGGCCAAGTACCGGTTCTATCAGGAATTTCGTTGCTACGTTTCCGATTTGGTTGAGTGTCTGAACGAGAAGGTACCGTTGGTGACGGCACTCGAACAAAAGGCACTCGCCTTGATGGGGAAATATTCGAGTATGCTTATAGAGCGACGCCGTCAGGATATGCGCGACCAGGTGAAGGAGGTGACAGACGCAAACAAAATGGCCAAAAAAGCTGGTCCAGAGGATCAGGAACGCGTTCGGAGGGCTGCCGAACGGGAGGGTCGTCGAACGCGTCGTCGGCGAGATCGTGAAAAGAACGAAACGGCCGAAAGCCATTTCGACGGCATGTCTAGTGATGACGAAATCCCCGACATGGAGGCAGCGCGCTACCGTTCCGCTCTGCAAGCGATTGAACTGGAGTCGCGGGAAATCTTTGCAGACGCGGCAGAAGAGTACGGCGAGGTCGGTGGTATACTGGAGCGGTTCGAGCAGTGGCGCGAACATGATATGCCCGCGTACAGCGATGCTTACGTGAGCCTCTGTCTGCCGAAAATCCTGGCCCCGCTGATCCGTCTCGCGCACGTCTGCTGGAATCCGCTGACGATGGATGCGCTGGTCGAGCTGGAGAACGAAAGGTGGTACCGCACGGCCGCACAGTACGGTTGCTCGGCCACGACGGAAGCGGCGCTCGCAGCAGATCCGGACGTACGGCTGATACCGACGCTGGTGGAGAAAATATTCCTGCCCAAGCTGACGGCACTGGTGGAACAGTACTGGGATCCGCTGTCGACGACGCAAACGTTCCGGCTGGTGCGACTGCTGAAACGGTTCGTGCGGGACTACCCCTCGCTAAGGAGCACCTGCAAGCCGCTCCGGGTCCTCTTCCAAGCGATCCTCGATAAGCTGAAACAATCGGTCGATAATGATGTGTTTATTCCAATCTTTCCTAAGCAAGCCCAAGAGGCAAAGTCGTCCTTTTTCCAGCGTCAGTTCTGTAGTGGTTTAAAGCTACTGCGCAACATCACCAGCTGGCAAGGTATTGTGGCAGATGCGGCATTGAAGGATCTCGCCATTGGATCACTGCTGAATCGCTATCTACTGAACGGTATGCGTGTCTGCTCACCGGTGGACGCGGTCGCAAAAGCATCCACGATTGTGTACACCTTGCCGCGTGTTTGGCTCAACCCGGGTGCCTCGTTGATGCAGAGCATGGATCAGTTCGTCAGTATGCTGCGACATCTTCAATCTCAACTCGATTCTTCTCTTCCTCAAAATGGCGAACTTGCCGAACAGATACCTCTGCTCATGCTGCCACCGCTTCTTATCGAGCGTTGCAATGCGTTCGATATTTTCCCTCCCAACTACGACATCCGGTACCGGCTGGAAACGGACGTAACGCTCGTGCCGGATGTGCATGCGACCGATAACTACATGTGGTATCTTAATGGTTACCTGCGCGTCCATCGGTATGATGCGAAGAATCTCGCCGCTCAGATCGAGCTGGATCGTCATCACATACCGCAAAGTGAGGGTGATGTGTCGGCCCTGCTGCAACCGTTCCGCATAGCGATCGCCAACGATACGATCCTGAGCATTCAGTTCAAGCTGAACGAACCGATCTGGTCGGCGAACATTAAGCGTGCGCTGGCCTCGCTGCTGCAGGCGCACGGTGACGGACCCGGTGCGTACGTCGTGGACGAGCAGGGTATCTTTGGCAGCTGCCCGACCGAGTACTTCGTCGTGAACAAGTCGAACGTGTTCGAGATCTCCAAAACGTACGGCATGGACCGGTGCACGATCTACCGCGGTGCGATCTACCTGACGCGCAGCAACATCCCGCAGAACCACTGCATCCCGAACAAGCAACCGCAGGCCATCACATCGCGCATTGCCAACTACAAGCTGCGCAAGATTGAATCGTACCGCTACATGCTGACCGAGCTCGACGGAACAATGCGCACCAACATCCGGACGCTCGAGTCGTACTATCCACAGTTCCTGTACTCCCGGGTGGTACTGCGCTACGAGCAGCACCAGGTGCTGGACGATACGCCCGGACGGCCGGTGGTGGACATTGTCAGCGACATGGCACTCCTGTTAAGTCCGATCCTGTTCGACAGTCCCGATCTGGAGGCGACCGGTGGCCGGAGTCCCAAGTCGAAGGAGAAGCTTATTAAGCGCACCGCCAGCTTGCTGAACGCGATGGCCGACAATCTCGAGACGGTGGACAACAAGCTGAAGGAGCCGTACGATGAGACGGTGTCGGAAATCATTCGCCTGATGGGCACGATGGATCTGGAAACGTTGAAGCAGCTGTACGAGGAGATTGATCTCGGTACGTCCTACCGGCAGGAAACGGCACGGAACATCTTTCTCGAGATTGTGCCGCGTACCGGGACCACCTCCACGATACTGCTCACGCGCGACCTTATCATGAACAAGCAGGTTAACCCGATGACGGCGGTGCAGCTGCTGATTTCGCTGCCCTTTTACATGGCGGAACCGTCCAAGGAGCTGGTGAAGGAGTGTGAGGTATTTCTGGAGGTGGGTGCAGATCGGCCGGACATTAAGCATGCGGCCGTCCTGAGCTACGCCACCATGATCTACAACACGTTCGTCGCTGGCAAGCTGACGGCGGACACGTTCGAGAAGTACGTGAAAATGTACTTCGATCTGTTTCTAAATAGCTTCGAGTATGAGCAGCAGATGCTCTATCTCGAAGGGTTAGGCAATCTGCAGCTCGAAAACGTGGCCGAATATCTGGATCCAATTATACGTGCTGACTATCCGCAAAACACGGACATTCGCTTTCTGGCCATGCTGGCATTACTGCCAACGGCACATCTACGCCCGAACCAGGTGTACGAAACGTACTGGCCAATCTTTCACTCGCGCACCAGCCCACTGCAGCTGCGGGTGGCCGCTTTTACGATGCTGCTCTTTTCGAATCCAACGCCGGGTCGGCTGCTGGGGCTGTACAGCGTGATCAAGACGGAAAACGATCCGCACATGATCAACTTCTATCGCACGACAGTGTTGAGCATCTCCGAGACGACCTATCCTTGCTATCAGCATCTCAAACTTCTGCTCGCCTACATGACCCGTCAGCTGCCGGATGCACCGGCCCCAAAGTACTGGGTCACTGGTAACTATCTGTTCGACTATCGTGATCGCAAGTTCCACATCGGTTCCATGCTGCAGACGATGCTGATCGGCAGCCATCAGACGGACCTGCCGATGATTGCTTCACTCAAGTTCGATACGGAAGCTCTTGGACGATTCACTGGACAGCTGGGGCTGTACATTAAGGCACGGGGGTTGAGTGACGCCGTCATCAATCGACTGACCACCTTCAACTCGAGCCACCTACGGCTGGACCGGCTGAGCAGCATACTGAAGACGATGAAGCTGTCCACCATCAGTCCAACGCCGCTGCACTTTGAGTTCATCGTTCAGTTTGAAGGCAAGGCGGTCTTGTGTTACCATCTGAATCAAACTACCTTCCACAATTTAACCGATGGAAACATAATCAACCGGATCAACCTGCTGCGTGACAGCCACGTGAACATGCAGATCGTACGACGCCCGTTCATGATCAAGTACGCGCTGCCGACGCTGCTTGGCACACCGGCAGACATACTGATCGAAAACACCGTGCTGGCAACGGTGCGCGGCAACACGACGCAGCAGATGATGCTGATGGACAAGGTGGCACGCAGCAATCAGGTGGACGTACGGTACTCGTCCTATGCGGTGGTCAAAATTCGCAGCTACAACCCAATCAACGATGTGGAATATTCGACCATCCGCGAGCAGGGCTTCCTGGTGTACATACCGGTCAACAACGAGATCGTGTGGGACATAGCGGGGAAGTCCATCAGCTATAGCTTCTATCGGCCGGAAAACATGACCAGTGGCATCTCGCTTAAGAGCCGCACCCGCAACACACCGGACAATGGGTCGGAGGCAACGGAAACGCTCGAACCGAAGGAGGAAGACATTGCCAAGTACGGGTACAAGATAGACGATCTTGGGATACAGCTGTTGGCACGGGTACATCAAGACTACACCAAGGACAATGTCATGTTTATGCTCGAAACTGACATTCTGGACAATGCGAAGGTGCTAACCAAAGCGCCCTTCTCGCTGGTCAACAATCTGCTCCGCATCGTCAGCCTGATCCAACTGAACACGATCCACATTGGGCGAGACAAGCACCTGACGCTGCTGATTGCAAACGACCAAAAAACGCTCCTGCAGGGCACACTCAAGTGGGACACACAGAACTACTCGAAGCAACCGTCCGTGCCGGAGAATGAGGTACTGCGGGTAAATCTCATACTGGCCCACACCATCCCGAAACCGGAAGGGAGCCGGGATGAGGTGAAGGTACTGCACAAGTGGGACATCGTATCGCAGTACACCAACTTCAAGTGTGATCGGGCGGCGCGGATCTTCTTCTCCCTGACGCGCCACGAATGGAACAGCTCACACTGGAAGATGTGCTTTTCGGCGGATTATCGACCGCTGGTGTTTTTGCAGCGACCGTTCGAGCTAACCGGTGATGTAGTGTTTGGCGAAACGCGTGTACCGAAACAGTGCCCCAAGGAGCCACGGATTGCGTTCAATGTGTCCTACCATCTGCCGGAGTACGTCGAGCGCATTTACCGTGCACTGGACACCAAG
Protein Sequence
MSLFRKPKKPIQRRVFSGYDDEDEENYGTSAKDSTHPNSASSGNGTHNGSGINRSTPMDVDPVPEGPAIAAVIPSSSSEQHRKRKEHRAAAAADSGSKGSLKANPSTKPSLLSFDDEEEGGEVFQVKKSSHSKKVMKTLDKERRRKRHLEKSNGTQTGGPGSGGTGTMDQGKPTNAAARKHQSSTPPSTVVGSAYGNDSNDKIKREKCENSSSNIQTEIRTDDFVLVVKKSDPENMILNGRAALCAGRNDMSSEDDGNEEEESEGRMQHHHRFAKPQDNFKMCLENGVIPDAAMIHAARKRRQKAREQGEFIPVEEPKEEKTKKRTVQEDGDGDGSDEDDDRIDMSAITGAKEREERREQFYAVQREDSDAEDSDVETKEWENQQIRKGVTGAQLVSAQQESVISQYLIGSSFSQTFQNKSTLLLDDQRTGGDGTSEFRGLSTAALLEKAYAASSGIRLSGTGGSSKRSQASSNNSGPKSSDTKPTGPRMPQQILAQLTERHRTTAELNRKHDEDIDHITQEVKLLQMDHLACEQKAPVAAAKYRFYQEFRCYVSDLVECLNEKVPLVTALEQKALALMGKYSSMLIERRRQDMRDQVKEVTDANKMAKKAGPEDQERVRRAAEREGRRTRRRRDREKNETAESHFDGMSSDDEIPDMEAARYRSALQAIELESREIFADAAEEYGEVGGILERFEQWREHDMPAYSDAYVSLCLPKILAPLIRLAHVCWNPLTMDALVELENERWYRTAAQYGCSATTEAALAADPDVRLIPTLVEKIFLPKLTALVEQYWDPLSTTQTFRLVRLLKRFVRDYPSLRSTCKPLRVLFQAILDKLKQSVDNDVFIPIFPKQAQEAKSSFFQRQFCSGLKLLRNITSWQGIVADAALKDLAIGSLLNRYLLNGMRVCSPVDAVAKASTIVYTLPRVWLNPGASLMQSMDQFVSMLRHLQSQLDSSLPQNGELAEQIPLLMLPPLLIERCNAFDIFPPNYDIRYRLETDVTLVPDVHATDNYMWYLNGYLRVHRYDAKNLAAQIELDRHHIPQSEGDVSALLQPFRIAIANDTILSIQFKLNEPIWSANIKRALASLLQAHGDGPGAYVVDEQGIFGSCPTEYFVVNKSNVFEISKTYGMDRCTIYRGAIYLTRSNIPQNHCIPNKQPQAITSRIANYKLRKIESYRYMLTELDGTMRTNIRTLESYYPQFLYSRVVLRYEQHQVLDDTPGRPVVDIVSDMALLLSPILFDSPDLEATGGRSPKSKEKLIKRTASLLNAMADNLETVDNKLKEPYDETVSEIIRLMGTMDLETLKQLYEEIDLGTSYRQETARNIFLEIVPRTGTTSTILLTRDLIMNKQVNPMTAVQLLISLPFYMAEPSKELVKECEVFLEVGADRPDIKHAAVLSYATMIYNTFVAGKLTADTFEKYVKMYFDLFLNSFEYEQQMLYLEGLGNLQLENVAEYLDPIIRADYPQNTDIRFLAMLALLPTAHLRPNQVYETYWPIFHSRTSPLQLRVAAFTMLLFSNPTPGRLLGLYSVIKTENDPHMINFYRTTVLSISETTYPCYQHLKLLLAYMTRQLPDAPAPKYWVTGNYLFDYRDRKFHIGSMLQTMLIGSHQTDLPMIASLKFDTEALGRFTGQLGLYIKARGLSDAVINRLTTFNSSHLRLDRLSSILKTMKLSTISPTPLHFEFIVQFEGKAVLCYHLNQTTFHNLTDGNIINRINLLRDSHVNMQIVRRPFMIKYALPTLLGTPADILIENTVLATVRGNTTQQMMLMDKVARSNQVDVRYSSYAVVKIRSYNPINDVEYSTIREQGFLVYIPVNNEIVWDIAGKSISYSFYRPENMTSGISLKSRTRNTPDNGSEATETLEPKEEDIAKYGYKIDDLGIQLLARVHQDYTKDNVMFMLETDILDNAKVLTKAPFSLVNNLLRIVSLIQLNTIHIGRDKHLTLLIANDQKTLLQGTLKWDTQNYSKQPSVPENEVLRVNLILAHTIPKPEGSRDEVKVLHKWDIVSQYTNFKCDRAARIFFSLTRHEWNSSHWKMCFSADYRPLVFLQRPFELTGDVVFGETRVPKQCPKEPRIAFNVSYHLPEYVERIYRALDTK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00097768; iTF_00095643;
90% Identity
iTF_00097768;
80% Identity
-