Basic Information

Insect: Anopheles atroparvus
Gene Symbol: -
Assembly: GCA_015501955.1
Location: CALTRM010000050.1:446233-448711[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 3 6.8e+03 -4.8 1.3 17 30 118 134 114 139 0.67

2 12 1.3 2.9e+03 -2.9 0.0 27 46 235 254 233 258 0.85

3 12 0.26 5.9e+02 -0.6 0.1 26 32 411 417 400 428 0.76

4 12 0.24 5.5e+02 -0.5 0.0 26 47 495 516 487 521 0.82

5 12 0.0022 5.1 6.0 0.0 21 46 518 543 512 549 0.85

6 12 0.00011 0.26 10.1 0.0 21 45 546 570 542 577 0.87

7 12 0.0031 7.2 5.5 0.1 21 45 574 598 570 603 0.89

8 12 0.11 2.4e+02 0.6 0.0 21 47 626 652 613 655 0.83

9 12 0.00012 0.28 10.0 0.1 21 52 655 686 645 687 0.82

10 12 0.02 46 2.9 0.0 22 45 712 735 709 742 0.84

11 12 0.00038 0.87 8.4 0.1 21 48 739 766 735 770 0.86

12 12 0.00021 0.47 9.3 0.0 21 45 767 791 763 794 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	3	6.8e+03	-4.8	1.3	17	30	118	134	114	139	0.67
2	12	1.3	2.9e+03	-2.9	0.0	27	46	235	254	233	258	0.85
3	12	0.26	5.9e+02	-0.6	0.1	26	32	411	417	400	428	0.76
4	12	0.24	5.5e+02	-0.5	0.0	26	47	495	516	487	521	0.82
5	12	0.0022	5.1	6.0	0.0	21	46	518	543	512	549	0.85
6	12	0.00011	0.26	10.1	0.0	21	45	546	570	542	577	0.87
7	12	0.0031	7.2	5.5	0.1	21	45	574	598	570	603	0.89
8	12	0.11	2.4e+02	0.6	0.0	21	47	626	652	613	655	0.83
9	12	0.00012	0.28	10.0	0.1	21	52	655	686	645	687	0.82
10	12	0.02	46	2.9	0.0	22	45	712	735	709	742	0.84
11	12	0.00038	0.87	8.4	0.1	21	48	739	766	735	770	0.86
12	12	0.00021	0.47	9.3	0.0	21	45	767	791	763	794	0.91

Sequence Information

Coding Sequence: ATGGCCGTGGTCTTCGCTGTAGCTCATTCAATGCTCGGTAAATATGCCGATGCGAGTTCCAGCTCGATGATAAACCTGGAAAATGGTCTCCGGAACCGCGCACTGTACCATCAGAACATGATGGGTATGAATCTGATGGCCGAGTTCTACCACAACCCTCCGTCTCTTACGAATCCGTCCGTCAGCAGTGGCGGTGGCGGCGGTGCCGGCGTTGGAGCAGTTTCTATGATGTCACAGTCGCAAAAGATGCTCAACAGTCTGTCGGTAAGCGCTGGAAACGTTCTGCAATCGCAGCACACCGGCAACGCTCCCGTAGTGACGACGGTAGCGATAGGAGCTGCTCCAACCACATCGAGTAGTGCATCGCAGCAACCGCTGGCGCAGCTGCAATGTCAACTTTGTCAAAAGTACTGCATTTCCGGCACCGTACTCGCACAGCACATGAAAACACACGAAAATGACTACTTGCCAGCGAGGGAAGAGGTCGGCCCGAGTGGCGGCTACAGTCAGCAACAATCGATACCGTCCGCTTCCTCGCTAGTAACGGCAGTGGCATCGAGTAGCAAAACTAGTCCACCGCTGCTGACACAGCACAGCATCAAGAGTGAGTACATTGGAGGAAATGCGACTGCCACGGCTGTGTCCCTGGCGGTAGGGGCAGGCCAGTTTTCTCCTGCGTACGGcataacgaagcagtttgattgccacatttgtcacaaatcgttcatgacaatgatgaacctcaatctgcacatgaaAATTCACGAGGAGTTGAAATCGGCTGCGGCAAGCCACATCTACTCCCATGCGGCGGGtgccaccacgacaacgtcgaacaattttcatcaccaccatcatcaccagcatcaaaatcatcacaacaacaacccgcaacagcagcagcagcagcacattcctatgctaggatcatcaataggagcgactgtaaacgatggcTCGTGCCAGATTTGCCATAAAACTTTCAGCACGGTGGAACAATTTACGGCACACATGAAGATTCACGAGAATGAGTTTAAAAACCGTGCCCTGTAccactccggtagctcaaatgccgtcggtagcagtagcagcagcagcagcagcgtagtgcatagcgtcacgacgccgacaacgacggcagGGACAGATCCGTTTTACCCTGCAACGCAACCACTGCAGATCCTCGCTCCGCAGACACCGGcaccgcagcttgacgccacgaagggccaccgatgtccaatctgccacaaaatgtccaacaacatcatcgaacacattaagcaacacgaaggacagctaacgatgggtgacggtggggcaaacagcagaagcggaacggccccgtcaccaccgggggttgtgggttcacctggaggccccaccaccgcagtgtatccacaattgaacgaagattcacagtcatcgctcgagggagacgacagcgagggccaggctggcgaggggcccgagagccgaaagcacgagtgtctgatctgccacaaaaagttctcgagctcgggaaacttggccatccatatacgggtgcactcgggcgagaagccgttcaaatgtaccgtgtgcggcaagggtttcatccagtccaacaacctggcgacgcacatgaaaacgcacacgggcgaaaaaccttacgcgtgcacgatctgcgggaaaaattttagccagtcgaacaacctgaagacacacatccggacgcacaccggagaaaagccttacgcgtgcacgatctgcgggaagcggttcaaccagaagaacaatctgaccacgcacatgcgcacgcaccagctggtgtgcatggtgtgcggcgtgcagttcatgcatccgtccgacctggccaaccacatgaaatttcacaacgacgaaaagccgtacatctgctcggtatgcaacaaggtgtacctcaacctggacgagctgaccgagcacatgaagaagacgcacaaccaggtcaagccgtaccggtgccacatctgcgacaaaacgttcacccagtcgaacaacctgaagacgcacatcaagacgcacatattccaagatccgtacaagtgccagatgtgctcgcgctccttccagaaggaggacgactattcgcagcatatgctcgtgcacacggccgataagccgtacgagtgcacgtactgcggcaagcggttcatccagtccaacaacctgaagacgcacgtccgcacgcacacgggcgaaaagccataccggtgttcgatctgcgcgaagctgttcaaccagaagaacaatctcaatacgcacatgcgcatccacaccggcgagaaaccgttcgaatgtaccatctgcgacaagcgcttcaaccagtcgaacaatctgaacaaacacatcaaaacgcatggccaggagaaggatgagcagcagcacgcgagttga
Protein Sequence: MAVVFAVAHSMLGKYADASSSSMINLENGLRNRALYHQNMMGMNLMAEFYHNPPSLTNPSVSSGGGGGAGVGAVSMMSQSQKMLNSLSVSAGNVLQSQHTGNAPVVTTVAIGAAPTTSSSASQQPLAQLQCQLCQKYCISGTVLAQHMKTHENDYLPAREEVGPSGGYSQQQSIPSASSLVTAVASSSKTSPPLLTQHSIKSEYIGGNATATAVSLAVGAGQFSPAYGITKQFDCHICHKSFMTMMNLNLHMKIHEELKSAAASHIYSHAAGATTTTSNNFHHHHHHQHQNHHNNNPQQQQQQHIPMLGSSIGATVNDGSCQICHKTFSTVEQFTAHMKIHENEFKNRALYHSGSSNAVGSSSSSSSSVVHSVTTPTTTAGTDPFYPATQPLQILAPQTPAPQLDATKGHRCPICHKMSNNIIEHIKQHEGQLTMGDGGANSRSGTAPSPPGVVGSPGGPTTAVYPQLNEDSQSSLEGDDSEGQAGEGPESRKHECLICHKKFSSSGNLAIHIRVHSGEKPFKCTVCGKGFIQSNNLATHMKTHTGEKPYACTICGKNFSQSNNLKTHIRTHTGEKPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFMHPSDLANHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQKEDDYSQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYRCSICAKLFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKDEQQHAS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00094079;
90% Identity: iTF_00094079;
80% Identity: iTF_00094079;