Basic Information

Insect: Anopheles albimanus
Gene Symbol: -
Assembly: GCA_013758885.1
Location: NC:61892135-61896013[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 1.1 4.2e+03 -2.7 0.0 27 46 93 112 91 114 0.84

2 11 0.043 1.6e+02 1.9 0.1 20 32 252 264 248 276 0.78

3 11 0.11 4.3e+02 0.5 0.1 26 47 338 359 331 364 0.81

4 11 0.0029 11 5.6 0.0 21 45 361 385 356 388 0.89

5 11 2.1e-05 0.079 12.4 0.0 21 44 389 412 385 417 0.91

6 11 0.0032 12 5.5 0.1 21 45 417 441 413 446 0.89

7 11 0.086 3.2e+02 0.9 0.0 21 47 469 495 456 498 0.83

8 11 9.9e-05 0.37 10.3 0.1 21 52 498 529 488 530 0.82

9 11 0.025 93 2.6 0.0 22 44 555 577 552 581 0.88

10 11 0.00031 1.2 8.7 0.1 21 51 582 612 577 614 0.86

11 11 0.00015 0.57 9.7 0.0 21 45 610 634 606 640 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	1.1	4.2e+03	-2.7	0.0	27	46	93	112	91	114	0.84
2	11	0.043	1.6e+02	1.9	0.1	20	32	252	264	248	276	0.78
3	11	0.11	4.3e+02	0.5	0.1	26	47	338	359	331	364	0.81
4	11	0.0029	11	5.6	0.0	21	45	361	385	356	388	0.89
5	11	2.1e-05	0.079	12.4	0.0	21	44	389	412	385	417	0.91
6	11	0.0032	12	5.5	0.1	21	45	417	441	413	446	0.89
7	11	0.086	3.2e+02	0.9	0.0	21	47	469	495	456	498	0.83
8	11	9.9e-05	0.37	10.3	0.1	21	52	498	529	488	530	0.82
9	11	0.025	93	2.6	0.0	22	44	555	577	552	581	0.88
10	11	0.00031	1.2	8.7	0.1	21	51	582	612	577	614	0.86
11	11	0.00015	0.57	9.7	0.0	21	45	610	634	606	640	0.91

Sequence Information

Coding Sequence: ATGCTgtggccactgccaccgccgccgccaccaccaccggaggatTCGTCAGCCGACAGGAAACCACCGTTGGCAGCAGTTATCTGCAACCGTCTGCTTCATCGCTCGAACACGTACCCACccgggcagcagcacatgGAGCGAACAGTAAAACTAGTCCCCCGTTGCTGCTTGCTCAGCACAGCATCAAGAGTGAGTACGCTGGTACCGCGCGGTATCGGCTCGCTAGCGAGCGGTCAGTTCTCCTCACCGTACGGTATTATCAAGCAGTTTGACTGCCACATCTGCCATAAATCGttcatgacgatgatgaacctCAATTTGCACATGAAGATCCATGAAAACGACCAGAAGGTGGTCGCCGCACACGTGTATTCGTCGCACGCAGGAGCCACCGGTGCGACCTATCACCAACAGCAaggccatcaacagcagctccaTCCGACGCTGCTGCAGGCGGCTTCGTCGTCTGGGGCTGTTCCCTCGACTACTGCGTCAACAGGACGTAACACCGACGGTGTTTGCCAGATTTGTCACAAAACATTCAACAGCACGGAACAGTTTACCGCCCACATGAAGATCCACgaggaagaatttaaaaatcgTGCCCTTTACcactcctccaccaccacaggTGGCAGTACGGCAGTGGCTGCCAGTGCTGCAGCGTTCTATCCTACTCTGCCACAAACAGCAACATCCTCAGCCAcacaatcgcagcagcagcagcagctcccaaCGGTAACTTTGTATCAAAGCTCCAAGGGGCACCGTTGCCCGATCTGCCACAAAATGTCCAGCAACATTATTGAGCACATTAAGCAGCACGAAGGACAGCTAATAATGGGCGGAGGTGGATCGTCGGCGCCgggaaccggtggtggtagtccATCGGGTGATCGGTCCTGCGCCACGCCCGGTTACCAGCTGAACGAGGAAACATCGCAGGCATCTTCGCTGGCGGAGGGCAGCGATAATGAGgccggcgatgatgatcagcgCAAGCAGCACGAGTGCTTGATCTGTCACAAAAAGTTCTCCAGCTCGAGCAATCTGGCCATCCACATTCGGGTGCACTCGGGGGAGAAACCGTTCAAGTGTAGTGTCTGCGGCAAGGGCTTCATCCAGTCGAACAATCTGGCCACGCACATGAAAACGCACACCGGCGAAAAGCCGTACACGTGCACGATCTGTGGCAAAAAGTTTAGCCAATCGAACAACCTGAAGACACACATCCGGACACACACGGGTGAGCGGCCGTACGCGTGTACGATCTGTGGGAAGCGGTTCAACCAGAAGAACAACCTGACCACGCACATGCGCACGCATCAGCTGGTGTGTATGGTGTGCGGGGTCCAGTTTGCGCATCCGACCGATCTGGCGAACCACATGAAGTTCCACAACGACGAGAAACCGTACATTTGCTCGGTCTGCAACAAGGTGTACCTCAACCTGGATGAGCTGACCGAGCACATGAAGAAAACGCACAACCAGGTCAAACCGTACCGGTGCCACATCTGCGACAAGACGTTCACGCAGTCCAACAACCTGAAGACGCACATCAAGACGCACATCTTCCAGGATCCGTACAAGTGCCAGATGTGTTCGCGCTCGTTCCAACGAGAGGACGAGTACGGTCAGCACATGCTCGTCCATACGGCCGACAAACCGTACGAGTGTACGTACTGTGGCAAGCGCTTCATCCAGTCGAACAATCTGAAAACGCACGTACGGACGCATACGGGCGAGAAACCGtacagctgctcgatctgtcTGCGGAACTTCAACCAGAAGAACAACCTGAACACGCACATGCGCATCCACACCGGCGAGAAACCGTTCGAGTGTACGATCTGCGACAAGCGGTTCAATCAGTCGAACAACCTGAACAAACACATAAAGACGCACGgccaggagaaggagcagcagcagcagcagcaacagcagcagcagctgacgttgcaacatcaccaacagcagcaccagcaccatcagcaacagcagcttccaAGTTGA
Protein Sequence: MLWPLPPPPPPPPEDSSADRKPPLAAVICNRLLHRSNTYPPGQQHMERTVKLVPRCCLLSTASRVSTLVPRGIGSLASGQFSSPYGIIKQFDCHICHKSFMTMMNLNLHMKIHENDQKVVAAHVYSSHAGATGATYHQQQGHQQQLHPTLLQAASSSGAVPSTTASTGRNTDGVCQICHKTFNSTEQFTAHMKIHEEEFKNRALYHSSTTTGGSTAVAASAAAFYPTLPQTATSSATQSQQQQQLPTVTLYQSSKGHRCPICHKMSSNIIEHIKQHEGQLIMGGGGSSAPGTGGGSPSGDRSCATPGYQLNEETSQASSLAEGSDNEAGDDDQRKQHECLICHKKFSSSSNLAIHIRVHSGEKPFKCSVCGKGFIQSNNLATHMKTHTGEKPYTCTICGKKFSQSNNLKTHIRTHTGERPYACTICGKRFNQKNNLTTHMRTHQLVCMVCGVQFAHPTDLANHMKFHNDEKPYICSVCNKVYLNLDELTEHMKKTHNQVKPYRCHICDKTFTQSNNLKTHIKTHIFQDPYKCQMCSRSFQREDEYGQHMLVHTADKPYECTYCGKRFIQSNNLKTHVRTHTGEKPYSCSICLRNFNQKNNLNTHMRIHTGEKPFECTICDKRFNQSNNLNKHIKTHGQEKEQQQQQQQQQQLTLQHHQQQHQHHQQQQLPS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00092287;
90% Identity: iTF_00092287;
80% Identity: iTF_00092287;