Apur001515.1
Basic Information
- Insect
- Anomoia purmunda
- Gene Symbol
- MBD2
- Assembly
- GCA_951828415.1
- Location
- OX639993.1:21221149-21223070[+]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.1e-27 9.7e-24 84.6 0.0 1 73 7 74 7 78 0.95 2 2 0.00058 5 8.7 0.0 27 73 215 272 205 276 0.83
Sequence Information
- Coding Sequence
- ATGAATTCCAGCATAACCATTGAACGTAAGCGTGTTGATTGTAATTCGTTACCAAAGGGTTGGCAGCGAGAGGAGGTACTACGAAAATCGGGTATATCAGCTGGTAAAGTCGATGTTTACTATTACAGCCCAACCGGCAAGAAAATCGAAAGTAAACCACAGTTGGCACGATATCTTGGCGATGCGATCGACATTGGCGCTTTCGATTTTCACAGTGGCAAATTTGTACGGCATTTGCCACCGCCATCGATTTCATTATTCCGTTGCAGTAGTGTTGTCAACAGCGGCAATGGTGCTAGTGGCAGTTGTAACACGTCAatgccgccaccaccaccacactGCAGTGCCAGTAGCAGTCCATCCTTATCGGTGTGTTCCTCCCCAACTTCTTTACAATTACCCAGTACTACAAATGCCAATATACTACAATCACCAACACAAACAATACCAAATACTCCAAATTCATTAAAGCGCAAATACAAAGCGCAATCCCAATCCCAATTACAAATTCAGAATCAATCACAGACCCACCAGTTACAAGGCATGCATACGAATGCCACTAGTAGCAGTTGTGCCCCATCGAGCGCATGTGGTGCTGCAACTACATCGGCTGCAATCTCTCGTCAGCAATTAGAATTCAGTCGCGCGCCACGCACAGACGCTTCATTGGTGCCGCCCATACGCCAGACCGCATCGATTTTTAAACAACCAGTGACGGTGGTGCGCAATCATGAGCATTCGAAGGTGCGAAATGAAAACACCAAACAGACAATCGGACAGGAGAAACCAAAGCAAATGTTCTGGGAGAAACGATTAGAGGGTTTGCGTGCTTGCCATCCCACTGGCGAAGAGTTCGATGATATTGTGTTACCCAAAAGTATACGCACTATAGGGCCGAATGTTAATGAACAGACTGTGCTGCAATCGTTAGCCACCGCGTTGCATGTACTGAACGTGCCTGTTATGGGTCAGGCCTCCACCAAGACTGAGATGAATAAGAATGCTACGGCTTTTTTGAATCCCGAACAACCGCTGATGCAAGCTGTTCTAGTGTCAGAGGAGGATATACGGCGGCAGGAGGACCGGGTTAGTGCTGCTCGAAAAAAGCTACAGGATGCGCTGAAAGCTTAG
- Protein Sequence
- MNSSITIERKRVDCNSLPKGWQREEVLRKSGISAGKVDVYYYSPTGKKIESKPQLARYLGDAIDIGAFDFHSGKFVRHLPPPSISLFRCSSVVNSGNGASGSCNTSMPPPPPHCSASSSPSLSVCSSPTSLQLPSTTNANILQSPTQTIPNTPNSLKRKYKAQSQSQLQIQNQSQTHQLQGMHTNATSSSCAPSSACGAATTSAAISRQQLEFSRAPRTDASLVPPIRQTASIFKQPVTVVRNHEHSKVRNENTKQTIGQEKPKQMFWEKRLEGLRACHPTGEEFDDIVLPKSIRTIGPNVNEQTVLQSLATALHVLNVPVMGQASTKTEMNKNATAFLNPEQPLMQAVLVSEEDIRRQEDRVSAARKKLQDALKA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01045464;
- 90% Identity
- iTF_01189424;
- 80% Identity
- -