Atri015336.1
Basic Information
- Insect
- Andrena trimmerana
- Gene Symbol
- -
- Assembly
- GCA_952773225.1
- Location
- OX731550.1:34120252-34124228[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 2.4e-12 1.6e-09 37.8 0.0 1 39 316 355 316 359 0.90 2 4 7.2e-12 5e-09 36.3 0.1 2 39 371 408 370 411 0.94 3 4 2.6e-18 1.8e-15 56.9 0.0 2 45 426 470 425 470 0.97 4 4 3e-18 2.1e-15 56.7 0.1 1 42 477 519 477 520 0.97
Sequence Information
- Coding Sequence
- ATGGGTTATTCCACGTCCACCTTCCACGATCCTCGCGAACCCCCCGCGATTCCGGGACGTATCGGGGCGACTTCCGGCTACGCGGTGACGATCCTTCGGGGTCCACTGCGCGCTGGAATTCGGTCACTGTTGAAGACGGCCGATCAGCTGAAGATCAAAGGTCTCTGCGAGGTGCCGGAAAGCAGAGACGGCCCACCCTCGGTGAGCCTGAGCTCGCCGTCACGGGAACCAGGCACTCCTAGGATAAACTTCACCAAGCTAAAGCGTCACCATCCGAGGTACAAGAGGGCCAGAACCACGTTCGAGCCTCGCGCCACCGACTCCAGGCACTACGACAGGTACAAAGAGGAGGAGTCGAACGAGAACTACAATCGGGAGAACAAAGAGAACCACAGGGACTGGCAGGCCGAAGATGAAGATTGCGCGGAGGGAACAACGGCAGCAGTAGTCTTGGAAACTTGCCAGcgcaacaacaacaataacaacaacaacggtAACGGGACGAACAACAATAACAACGGCGACATGTTCTGTCACACAGGGCTCGGCCACTACGGCCACCATCCTGATCCTGGAGAGGTCGATCTGCCCCCAGAGACACAGCCCACACCACCCAGTGCAACCTTGGTTGGCACCACGATCACCCATCTCAGAGATCCGGATCATCACTCTACAGAGATTCAGAACTGTGACAGCGTGAAGATAAAGTTCGAAACGTTGCACACGATGGACTCGTCGGACACGATCGACATCGACAGCCACATGTCGGACCGGGCGAGCGTCAGCTCGAAGAACGCGGCCGACAGCGACAACATGATGATGATCACGCCGGAGCTGCTCGGCCTGATGCCGTCTGGAAGCTCCGTTCACTCGGATTCCGGGGAGAACAACTCCAGGGGCCATTCCGGCCAGTCCAGCTCGCATCACCACGGCTCGAAATCGTGGACGCAGGAGGACATGGACGCGGCGCTGGAGGCGTTGAGGAACCACGACATGAGCCTCACGAAAGCCTCTGCGACCTTCGGCATACCATCGACGACTCTGTGGCAAAGGGCGCACCGGCTGGGGATAGACACCCCGAAGAAAGACGGGCCGACCAAGTCGTGGAGCGACGAGAGCCTGAACAACGCCCTCGAGGCTCTTCGGACCGGCACCATCTCCGCGAACAAGGCCTCAAAGGCGTTCGGCATACCATCCAGCACGTTGTACAAAATCGCTAGGAGGGAAGGGATCAGACTGGCCGCGCCTTTCAACGCCAGCCCGACCACCTGGTCGCCCGCTGACCTGGACCGTGCTCTGGAAGCGATCAGGTCCGGCCAAACGTCCGTGCAGAGAGCCTCCACGGAGTTTGGCATACCCACGGGGACGTTGTACGGGAGATGTAAGAGGGAAGGCATCGAGCTGAGCAGAAGTAACCCCACGCCTTGGAGCGAGGACGCCATGACCGAGGCCCTCGAAGCCGTCAGATTAGGGCACATGAGCATCAATCAAGCGGCTATTCACTACAATCTACCCTACTCCTCTTTGTACGGCCGTTTCAAGAGGGGGAAGTACGAGGAACCCGCCGTCGGCGACATATCCCAAGACGGAAGCAATCCGCATTTCCATCAGAGCCCCAGCCAGAACCATTCTACCGCCGTTCCCGATCAAATGCCTTACCAAGGCAGCTGA
- Protein Sequence
- MGYSTSTFHDPREPPAIPGRIGATSGYAVTILRGPLRAGIRSLLKTADQLKIKGLCEVPESRDGPPSVSLSSPSREPGTPRINFTKLKRHHPRYKRARTTFEPRATDSRHYDRYKEEESNENYNRENKENHRDWQAEDEDCAEGTTAAVVLETCQRNNNNNNNNGNGTNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDPDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSVHSDSGENNSRGHSGQSSSHHHGSKSWTQEDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPAVGDISQDGSNPHFHQSPSQNHSTAVPDQMPYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -