Apra013008.1
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- MBD-R2
- Assembly
- GCA_963932275.1
- Location
- OZ010728.1:49226310-49235695[-]
Transcription Factor Domain
- TF Family
- MBD
- Domain
- MBD domain
- PFAM
- PF01429
- TF Group
- Unclassified Structure
- Description
- The Methyl-CpG binding domain (MBD) binds to DNA that contains one or more symmetrically methylated CpGs [2]. DNA methylation in animals is associated with alterations in chromatin structure and silencing of gene expression. MBD has negligible non-specific affinity for DNA. In vitro foot-printing with MeCP2 showed the MBD can protect a 12 nucleotide region surrounding a methyl CpG pair [2]. MBDs are found in several Methyl-CpG binding proteins and also DNA demethylase [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 1.3 9.5e+03 -2.6 0.1 44 60 401 417 399 436 0.76 2 2 1.7e-16 1.3e-12 48.2 0.3 6 69 543 606 538 614 0.90
Sequence Information
- Coding Sequence
- ATGAAGCGGCGGCGTACAGCGCGGTCGCGTGGTAAAGGAATACCGCCTGTGGGGGCGATGGGAATGGCGCGCAAATGTTGCGTGCGTAGCTGCGAGGTTGATGTGCAAGAAGCTCGTGCTAAAGGCTTGCCGCTTCACAAGTTTCCGAAGGATATTGGCCTGAGAAACAAGTGGTTAACCAGCGGTGGATTCGAAGGGAACTTTAAGCCTTCGCCGGGTCAGGTTGTCTGCCACAGACATTTTAAACGAGCAGATTACGAAGCCGCCAAGGGGCACAAGTTACTTCTACGTAAAGGCAGTGTTCCGTCGGTCTTTGCGGACTATGATACTCATCCAGATCCCGTGATTATGTCCGTGAAGTCGTCTACTTCCTACGCGCAAGAGGATTTGGATCTGATTAATTCCGAGATTCTGAACCTGGAGCAATCTATCTCGCCGCTACTGTCCGAAGCAAGAACGCCCAAGTCGGATAGTTGCGGAGAAACATGTTCCCTCCGACCAGGCTCGGCCGACCCTGCGAACCGCCCGGACTGCGCGCGATTAGTCGACAACGGTCGCAAAGCCGCGGCTCCGAACGTAGAGGCTGCCGCTGCTCCGATGAAAGAGGAAATAACTGAAGATTCGGAGAGCCAAGTAAATACGATGGCGGTGCAATTGGGAATCGTAGAGTCGGACCCGGCGATGAAGAATATACAGAAAGAGTTGGTTATCAAGGAGGAGCTGAAGAATATTAAACTGGAAGACGAGAAGGCGTTCGATAAGCCGGACGATTCGAAGACGAGAATGTTAAATCGAGACGGGCTGAAATTCTTTCCCGGCGCCAAATTAGAGGCGAAAGATTTCAACGAGAAATGGTACTCCGCTAAGGTGGTGGAGACCGATTGGGAGGAAAGGGAAGTGTTGATACACTTCGACAAGTGGAGCTCGAGATTCGACGAGTGGATACCCATGGATAGCTCTAGATTGCGTGTATTACAAGCGCAGTCAACCGAACAAACTTGGGACCTACCATCTCCGGAAACGAAAATGAAAGACTTTTCGGTAGGGGAGAGGATACTCGCTACGTGGGCCGACGGGAGGAAATACCCGGCCAAAGTAAAGGCGGTGTTAGGAAATGACAGATATGACGTGCTCTTTGACGATGGATACGCAAAGACTGTTAAATCGTCGAAGATGACGAAAATCGCTACGACGTCCGCGAAGCAATCCACCCAAATTGAAGAGTATATAGGAAGTAAACAAGAGAGAAGGGATAAGAAGCGAAAACATACGGTGATGGAGTTGTTTCATACGCACTCTAGAAAACGGTCGAAGAATGAAGCCGACAAACTGACCAAAAAGGACGGGCCTGCGGTTAACGAGAATGGGGAATGCTTTTCGGAAAATAAGATCGATTTAGATGGCACTTTGTTTGGACCGTGCTACGATCCAGGCACAGATTTGCTACGAGGCTTCGATACGAACGTATCAAAGATGAAATTTTGTAGCAAGAAAACCAGGAAAGAAACGTCTAAGAATGATATAGATCAGGAAGAAGATGTAGGGCCCGAGTGGGTAGATGGAGAACCTCAAGGAACCGAATCGTATATAGTGGACGGAAACGATGGACCACGTCGATCCATAATAGTGGCGGATAAAAGATTACCGCCGGGGTGGCAGAAACATTTTACTCAGAGAAAAGCTGGCACATCTGCTGGCAAATGGGATGTTCTGTTTCTTCATAAATCGAGCGGAAAGAAGTTCAGATCCAGGAACGATATTAGATCGTTTATGGAAACACAAGGGCAATTTGACTTTGATCCCGAGAAATTTGATTTTTGTATTCACCGAAAGAAGAAAAGCcatgtacaaaaaataaaacaagATGTTGTGGATGCGCCGAAAAAAATCAAGACTCTATTGCCTAAAACAAAGACAACATCCGTAGCAGATAATTTGTTGCTTACGCCGACAAGCGCAGCAGTTGCAACCGTCGCGTCTACGCCAACATCTGTTACAGATGGTGCTGTTTTCATCGGCGGACTCCGCGTAGAAATGGAGGACAGTGCTTATAAGTGTCCGAAGCCAGGATGTAATAAAACATTTAGGAAGGAAAATCTTTTACAAATGCATATAAAACATTATCATCCAGAATATTCCAAGTTTCTGGGATCCACGCCGAATGTTGCAGACTTAGCTTATGCGAGAACGATTGGAGAATCTGTCGAGGACATTATTCCTAGAAAGTCGAATAatttgttggaaaaatataacaAATTTGGGAAGAAGAAGTCTGTTCAAGATAAAGCATTATACATCGCGTCACCATTAGCAACATGTTCTACCCAACAACCCACATCACCCACAGTAATATTGCCAACAGTCTCGGAAGTGGAAGACGAGATGGATCAGGTGGAGAAGTGCAACGACACGCAAACAGAGGATATTAAAATGGAAAGAATGTCTCCGATTTCTAGTCATAGTATAGATATGGATGAAAATGAAGGTGAGAAAAAGCGGGAAGAAGCATGTGCAATGTCACCCGGAACATTATTTGATATAAAGATCAGAGAAGAAAAAACACAAAGTGGTATCAAAACTCTTCTCCCGGTAAGACCAAGTTCGTCGGAAGTACAAAGGATTGATAGATCGAAATCGTTGGACGAAGGCATTCATATCGACAAAATGAAGGGTCAACGGAAGCGACAATTATCGGAATACAGTTCTGACGTCCCAAGTAGGGGTAAACGGCGACACGGCGCGCAAGAACTTGCCGATGAATATGGCGATATAGACGACAGTGCTGTGGATGCCGAAGGACCTATTGCTCTGATGTACAGATATAGCCGTAGAAAATCAGATTCAAGAAGTGACGAGAACAGTCAAAGTAGTCAACTAAACGATTCTCGCCTTGAAAAAGGCGATTCCTTGAAAGAGGATATCGCTAAAAGAGGTACTAATAATGATGGGGAAGaaaatgaaggAGTTATGATGATGATTAATGGTGAAATGATAAAGGTGGAACAACTACGCAGGgaagaaataataaattgtaCTTGTGGATTCATGGAAGAAGATGGCTTGATGATACAGTGCGACCTTTGTTTGTGTTGGCAACATGGCCATTGTAATGCAATCGAAAGAGAAAAAGATGTGCCCGAAAAATATGTTTGCTTCATTTGCCAAAATCCGTATCGACAAAGACAGTCGAAAAAATATTACAACGATCAAGATTGGATCAAAGAAGGCAAATTGCCAACGTTGCCCAATCGAATGAAAAATCAGTATATAGTTAATCGAAGAACAGCTATGCTGAAGCGTTCTTACGATTTAGTGGCCGCTCTGTTACAGATACAACATGTCCTGCACAGCTTACGAGTGAAGATCAACGTAGCTCAAAAAAAAGATCATCCGAAGTTATATCTTTGGGCGAAAAATTGGGAAAAGATAGAAATACAAAAGCCGGACGTAACGCCAGTGCCGGTTGTAGAAATTACAACAAATACAGCGAAAGATACTGCAAACACCGTAGCTGATGCATCCCGCCGAGTGGAATTAAAGACGGAAACGAAATTCACTTTAAGAGACGATCACGACGAAAAATCAATAGCTTCCGATTCAGAGTTAATGAAAATTTTGGAAGAAGACAACACAACTGCGGAGGACACGAAAATTATTTGTAAGAAAGAAGATGCAGTAAATCAGAATAAAAGCCATATTCTTCTCGATGCTCTTACAAAAAGTAGTGCTACGGACGAAAAATATAAGAATTTGATAGCATCGAGCGTGAAAACAGACGCAGATACATTGTCGAATGAAACGGCTGTGCTTGAAAATGATATATCTGCGACAACCGTATCAGCAATTCCAATGCACGGCGAATTAAACGAGCATGGAATATCAACGCCGGTACAGCCTTTTATACCACAACCAGAAGCACCAATTGATCCAGGAGAATGTCGAATGCGGTTATTAGAACACATTGAACATTTTCAAAACCATATAGATGCAAGATTAACATCCATCGAGGCACAAGTTTGTGCTTTGGAAGCGATGGATCCGGAAGATGTACCTAGTCCAGATGTCCAACCTCGGACTAAACAAACGGTTCAAATGCTTCTTCGGGATTTAAACACAGTACGAAAATTAGCTGCTTTGTGTTGA
- Protein Sequence
- MKRRRTARSRGKGIPPVGAMGMARKCCVRSCEVDVQEARAKGLPLHKFPKDIGLRNKWLTSGGFEGNFKPSPGQVVCHRHFKRADYEAAKGHKLLLRKGSVPSVFADYDTHPDPVIMSVKSSTSYAQEDLDLINSEILNLEQSISPLLSEARTPKSDSCGETCSLRPGSADPANRPDCARLVDNGRKAAAPNVEAAAAPMKEEITEDSESQVNTMAVQLGIVESDPAMKNIQKELVIKEELKNIKLEDEKAFDKPDDSKTRMLNRDGLKFFPGAKLEAKDFNEKWYSAKVVETDWEEREVLIHFDKWSSRFDEWIPMDSSRLRVLQAQSTEQTWDLPSPETKMKDFSVGERILATWADGRKYPAKVKAVLGNDRYDVLFDDGYAKTVKSSKMTKIATTSAKQSTQIEEYIGSKQERRDKKRKHTVMELFHTHSRKRSKNEADKLTKKDGPAVNENGECFSENKIDLDGTLFGPCYDPGTDLLRGFDTNVSKMKFCSKKTRKETSKNDIDQEEDVGPEWVDGEPQGTESYIVDGNDGPRRSIIVADKRLPPGWQKHFTQRKAGTSAGKWDVLFLHKSSGKKFRSRNDIRSFMETQGQFDFDPEKFDFCIHRKKKSHVQKIKQDVVDAPKKIKTLLPKTKTTSVADNLLLTPTSAAVATVASTPTSVTDGAVFIGGLRVEMEDSAYKCPKPGCNKTFRKENLLQMHIKHYHPEYSKFLGSTPNVADLAYARTIGESVEDIIPRKSNNLLEKYNKFGKKKSVQDKALYIASPLATCSTQQPTSPTVILPTVSEVEDEMDQVEKCNDTQTEDIKMERMSPISSHSIDMDENEGEKKREEACAMSPGTLFDIKIREEKTQSGIKTLLPVRPSSSEVQRIDRSKSLDEGIHIDKMKGQRKRQLSEYSSDVPSRGKRRHGAQELADEYGDIDDSAVDAEGPIALMYRYSRRKSDSRSDENSQSSQLNDSRLEKGDSLKEDIAKRGTNNDGEENEGVMMMINGEMIKVEQLRREEIINCTCGFMEEDGLMIQCDLCLCWQHGHCNAIEREKDVPEKYVCFICQNPYRQRQSKKYYNDQDWIKEGKLPTLPNRMKNQYIVNRRTAMLKRSYDLVAALLQIQHVLHSLRVKINVAQKKDHPKLYLWAKNWEKIEIQKPDVTPVPVVEITTNTAKDTANTVADASRRVELKTETKFTLRDDHDEKSIASDSELMKILEEDNTTAEDTKIICKKEDAVNQNKSHILLDALTKSSATDEKYKNLIASSVKTDADTLSNETAVLENDISATTVSAIPMHGELNEHGISTPVQPFIPQPEAPIDPGECRMRLLEHIEHFQNHIDARLTSIEAQVCALEAMDPEDVPSPDVQPRTKQTVQMLLRDLNTVRKLAALC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00866702;
- 90% Identity
- iTF_00088053; iTF_00086340; iTF_00084551; iTF_00086279; iTF_00088872; iTF_00088823; iTF_00087160; iTF_00087224; iTF_00084603; iTF_00085438; iTF_00085376;
- 80% Identity
- iTF_00088053;