Apra011290.1
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- -
- Assembly
- GCA_963932275.1
- Location
- OZ010728.1:20256170-20256526[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8.5e-08 4.3e-05 24.2 0.0 2 42 12 52 11 55 0.90 2 2 8 4.1e+03 -1.3 0.0 23 30 101 108 100 109 0.86
Sequence Information
- Coding Sequence
- ATGACGACAAGGCGAAAGTACGGTAAATGGAATGAAGACGAACTACAAAAGGCCATTATAACTTACGAAAACGGTGACTATGGTTTAAATGAGTGTAGTAGGGTGTATGGAGTGCCAAAAGCCACACTGAAGCGACATTCCGCGAAAAAAAACTCATATGCGAATGGTATAACGGCTCTGGGTAAGCCACCCACGTTCTCTTTAAATCTGGAGAAGATTTTATCGGGCCACATTCTAACATTAGAAGAATGCTTTTTTGGATTAACAATTAAAGATGTGCGAAAACTCGCATTTGATCTAGCGGAAAAATATAACCTTCCCCATGCATTCAATACGGAGAAAAAGATGGCAGGGTAA
- Protein Sequence
- MTTRRKYGKWNEDELQKAIITYENGDYGLNECSRVYGVPKATLKRHSAKKNSYANGITALGKPPTFSLNLEKILSGHILTLEECFFGLTIKDVRKLAFDLAEKYNLPHAFNTEKKMAG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087877;
- 90% Identity
- iTF_00087892; iTF_00087903; iTF_00087877; iTF_00087873; iTF_00087878; iTF_00087879; iTF_00087881; iTF_00087882; iTF_00087883; iTF_00087884; iTF_00087887; iTF_00087889; iTF_00087894; iTF_00087895;
- 80% Identity
- -