Apra027122.1
Basic Information
- Insect
- Andrena praecox
- Gene Symbol
- -
- Assembly
- GCA_963932275.1
- Location
- OZ010731.1:50273708-50274145[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.2e-09 3.7e-06 27.6 0.0 2 42 12 52 11 55 0.90
Sequence Information
- Coding Sequence
- ATGACGACAAGGCGAAAGTACGGTAAATGGAATGAAGACGAACTACAAAAGGCCATTATAGCTTACGAAAACGGTGACTATGGTGTAAATGAGTGTAGTAGGGTGTATGGAGTGCCAAAAGCCACACTGAAGCGACATTCCGCGAAAAAAAACTCATATGCGAATGGTATAAAGGCTCTGGGTAAGCCACCCACGTTCTCTTTAAATCTGGAGAAGATTTTATCGGACCACATTCTAACATTAGAAGAATGCTTTTTTGGATTAACAATTAAAGATGTGCGAAAACTCGCAATTGATCTAGCGGAAAAATATAACCTTCCCCATGCATTCAATACGGAGAAAAAGATGGCAGGGAAAAAATGGTTTTACGCATTTATACGGCGAAGTCCTCGACTATATCTATTCGACAACCAGAGGTTACTTCACTTGCAAGAGTAA
- Protein Sequence
- MTTRRKYGKWNEDELQKAIIAYENGDYGVNECSRVYGVPKATLKRHSAKKNSYANGIKALGKPPTFSLNLEKILSDHILTLEECFFGLTIKDVRKLAIDLAEKYNLPHAFNTEKKMAGKKWFYAFIRRSPRLYLFDNQRLLHLQE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00087873; iTF_00087878; iTF_00087879; iTF_00087881; iTF_00087882; iTF_00087883; iTF_00087884; iTF_00087887; iTF_00087889; iTF_00087894; iTF_00087895; iTF_00087901; iTF_00087903;
- 90% Identity
- iTF_00087901;
- 80% Identity
- -