Amar007421.1
Basic Information
- Insect
- Andrena marginata
- Gene Symbol
- lola_1
- Assembly
- GCA_963932335.1
- Location
- OZ010660.1:59567284-59569770[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.2e-05 0.019 14.9 0.0 21 37 218 235 200 240 0.81 2 4 7.5e-11 2.8e-08 33.6 0.0 7 39 255 286 252 293 0.86 3 4 0.56 2.1e+02 2.0 0.0 21 34 320 333 306 338 0.80 4 4 1.5e-11 5.5e-09 35.9 0.1 4 39 364 399 361 404 0.93
Sequence Information
- Coding Sequence
- ATGTCCGAAGCTGTTGGCCAACATGAGATTAATCAGAGCTATTGTTTCAAATGGAATGACTACCAGAACCATTTGTCCGATGTAATTAGACAGCTTCTGGAGGAGGACTGCATGGTGGACGTGACACTGGCCGCTGCAGGGGAACGCATCCATGCCCATCGCATAGTCCTCTGCGCCTGTAGCACTCTCTTTCGAGATGTTTTAAGTCAAGTAAACGAAGATCATCCGACAATAATATTGAGCGATATATCTGCGCAGGATATTAAGTCTATCATAGAGTTTACTTACCATGGCGAAGTGCGAGTTCCAGTGGAGAATTTCAATAGTTTATTGGACGCAGCACGTTCCCTAAAAATAAGCGGTCTTATCGAGATCGATAGGGTAGACGAGACTGACTCAGTTTCGAGCACAAAGGATTTTAACGATAATAATGAAGAGCCAATGACTGTAATCAGCGAGGTGGAGGATAATGTTATTAACGCACTGCAACAGAGTTACGAAGAGTTAGAAGATCACCAAGAACAAGAAGTCATTGAAAATGCAACTATGAGTAAAAGAAAGAGACGTAGGCGCGATACGGCGAAAAGGGATTATAACGACGACATGCTAGCATCTGCGATAACTGACTTAAAGTTAGGGCAAACGTTAATAGAAGCTTCGACTAAGCACAATATACCGCGTTCGACGTTATACATGCGTGCCAAAGCGTTGGGTATACATTTCAACGCGTCGCGAAACGAGTACCCAGCGGAATGTGTGAAGGCAGCTATAAACGCTGTAATCGGTGGAACAAGTTTGCAACATGCGTCAGAAATGTTTAGCATACCCAAGACTGTACTATGGAGAAGGATTCAGAAAGAAGGCTACCAAATATTGCGTTCCGAAATGAGAAGGTCCTACGACTCTGACAAACGGGAGGCCGCAGTCAAGGCTTTGGAAAGGGGAGAGAATCTGACCAAAGTTGCGCTCGAATTCAAAATTCCAAAGACTACTTTATTTAGGGACAAGGCTCGGTTGGTAGACGAGGGAAAACTGCCGCTATCATTCTGGAAGAAGCGAAACTccgaaaacgagaaattaaagaaatcTCGGTTAGAAGAAGCTGTCGCTGCTTGTAAAGGAGGGAAAATGTCACAAGCGGCGGCGGCGATGACTTATCATATACCTAAGACGACGATATGGAGACGTCTTCAGCAAGACGGCAAGAAGTCGGAACGCCCGTTGAACTCGAGGAAACGACGAGTATCGGACTCGAAGAATGGCGCAGAATCGAAAACACAAGAGGGAGCCGATTTCACTTTTTGCGAGGTTTCTTCGGAGATTCCTATAACTTATATAGACGAAAGTAGTATACCTGAGGATTCTGTGATAATATTAACGGCAGAAGACATGGACGGACTTAATTTGGAAGAAGGACGACAGATTATCGTTAATTCGGAATCGGTACAGGAATATGTTCCCTGTACTATAAGTATCGAAGAGAATTCCAATTACTCGCAGACAGAGAGTTAA
- Protein Sequence
- MSEAVGQHEINQSYCFKWNDYQNHLSDVIRQLLEEDCMVDVTLAAAGERIHAHRIVLCACSTLFRDVLSQVNEDHPTIILSDISAQDIKSIIEFTYHGEVRVPVENFNSLLDAARSLKISGLIEIDRVDETDSVSSTKDFNDNNEEPMTVISEVEDNVINALQQSYEELEDHQEQEVIENATMSKRKRRRRDTAKRDYNDDMLASAITDLKLGQTLIEASTKHNIPRSTLYMRAKALGIHFNASRNEYPAECVKAAINAVIGGTSLQHASEMFSIPKTVLWRRIQKEGYQILRSEMRRSYDSDKREAAVKALERGENLTKVALEFKIPKTTLFRDKARLVDEGKLPLSFWKKRNSENEKLKKSRLEEAVAACKGGKMSQAAAAMTYHIPKTTIWRRLQQDGKKSERPLNSRKRRVSDSKNGAESKTQEGADFTFCEVSSEIPITYIDESSIPEDSVIILTAEDMDGLNLEEGRQIIVNSESVQEYVPCTISIEENSNYSQTES
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00118108;
- 90% Identity
- iTF_00086082;
- 80% Identity
- iTF_00087302;